co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G08640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046487: glyoxylate metabolic process	0.00E+00
2	GO:0042430: indole-containing compound metabolic process	0.00E+00
3	GO:0042362: fat-soluble vitamin biosynthetic process	0.00E+00
4	GO:0030149: sphingolipid catabolic process	0.00E+00
5	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
6	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
7	GO:0070994: detection of oxidative stress	0.00E+00
8	GO:0010398: xylogalacturonan metabolic process	0.00E+00
9	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
10	GO:0044843: cell cycle G1/S phase transition	0.00E+00
11	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
12	GO:0006412: translation	5.65E-53
13	GO:0042254: ribosome biogenesis	1.19E-17
14	GO:0009735: response to cytokinin	3.10E-09
15	GO:0000027: ribosomal large subunit assembly	5.47E-08
16	GO:0006820: anion transport	7.45E-07
17	GO:0042744: hydrogen peroxide catabolic process	9.74E-07
18	GO:0006626: protein targeting to mitochondrion	1.02E-06
19	GO:0042274: ribosomal small subunit biogenesis	4.98E-05
20	GO:0002237: response to molecule of bacterial origin	5.34E-05
21	GO:0006979: response to oxidative stress	7.90E-05
22	GO:0006564: L-serine biosynthetic process	7.90E-05
23	GO:0030150: protein import into mitochondrial matrix	8.91E-05
24	GO:0006869: lipid transport	2.34E-04
25	GO:0000494: box C/D snoRNA 3'-end processing	2.72E-04
26	GO:1901349: glucosinolate transport	2.72E-04
27	GO:0090449: phloem glucosinolate loading	2.72E-04
28	GO:0051512: positive regulation of unidimensional cell growth	2.72E-04
29	GO:1901430: positive regulation of syringal lignin biosynthetic process	2.72E-04
30	GO:0032365: intracellular lipid transport	2.72E-04
31	GO:1990258: histone glutamine methylation	2.72E-04
32	GO:0009968: negative regulation of signal transduction	2.72E-04
33	GO:0030490: maturation of SSU-rRNA	2.72E-04
34	GO:0010365: positive regulation of ethylene biosynthetic process	2.72E-04
35	GO:0006364: rRNA processing	2.93E-04
36	GO:0098656: anion transmembrane transport	3.90E-04
37	GO:0009915: phloem sucrose loading	5.99E-04
38	GO:0009967: positive regulation of signal transduction	5.99E-04
39	GO:0015786: UDP-glucose transport	5.99E-04
40	GO:0019752: carboxylic acid metabolic process	5.99E-04
41	GO:0055114: oxidation-reduction process	7.09E-04
42	GO:0009651: response to salt stress	8.15E-04
43	GO:0008652: cellular amino acid biosynthetic process	9.72E-04
44	GO:1902626: assembly of large subunit precursor of preribosome	9.72E-04
45	GO:0080141: regulation of jasmonic acid biosynthetic process	9.72E-04
46	GO:0045793: positive regulation of cell size	9.72E-04
47	GO:0043157: response to cation stress	9.72E-04
48	GO:0015783: GDP-fucose transport	9.72E-04
49	GO:0072334: UDP-galactose transmembrane transport	1.39E-03
50	GO:0010587: miRNA catabolic process	1.39E-03
51	GO:0032877: positive regulation of DNA endoreduplication	1.39E-03
52	GO:0046836: glycolipid transport	1.39E-03
53	GO:0009413: response to flooding	1.39E-03
54	GO:0048511: rhythmic process	1.50E-03
55	GO:0009617: response to bacterium	1.53E-03
56	GO:0040007: growth	1.79E-03
57	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	1.86E-03
58	GO:0051781: positive regulation of cell division	1.86E-03
59	GO:0031167: rRNA methylation	2.37E-03
60	GO:0048015: phosphatidylinositol-mediated signaling	2.37E-03
61	GO:1902183: regulation of shoot apical meristem development	2.37E-03
62	GO:0045040: protein import into mitochondrial outer membrane	2.93E-03
63	GO:0006574: valine catabolic process	2.93E-03
64	GO:0002238: response to molecule of fungal origin	2.93E-03
65	GO:0009955: adaxial/abaxial pattern specification	3.52E-03
66	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.52E-03
67	GO:0010189: vitamin E biosynthetic process	3.52E-03
68	GO:0009554: megasporogenesis	3.52E-03
69	GO:1900056: negative regulation of leaf senescence	4.15E-03
70	GO:0050829: defense response to Gram-negative bacterium	4.15E-03
71	GO:0006401: RNA catabolic process	4.15E-03
72	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.82E-03
73	GO:0009642: response to light intensity	4.82E-03
74	GO:0000028: ribosomal small subunit assembly	4.82E-03
75	GO:0006102: isocitrate metabolic process	4.82E-03
76	GO:0001510: RNA methylation	5.52E-03
77	GO:0001558: regulation of cell growth	5.52E-03
78	GO:0006367: transcription initiation from RNA polymerase II promoter	5.52E-03
79	GO:0009245: lipid A biosynthetic process	6.25E-03
80	GO:0006098: pentose-phosphate shunt	6.25E-03
81	GO:0009060: aerobic respiration	6.25E-03
82	GO:0015780: nucleotide-sugar transport	6.25E-03
83	GO:0006811: ion transport	6.27E-03
84	GO:0009409: response to cold	7.09E-03
85	GO:0009793: embryo development ending in seed dormancy	7.25E-03
86	GO:0006032: chitin catabolic process	7.82E-03
87	GO:0006913: nucleocytoplasmic transport	8.66E-03
88	GO:0009682: induced systemic resistance	8.66E-03
89	GO:0015770: sucrose transport	8.66E-03
90	GO:0072593: reactive oxygen species metabolic process	8.66E-03
91	GO:0000272: polysaccharide catabolic process	8.66E-03
92	GO:0010015: root morphogenesis	8.66E-03
93	GO:0008283: cell proliferation	9.30E-03
94	GO:0006790: sulfur compound metabolic process	9.52E-03
95	GO:0012501: programmed cell death	9.52E-03
96	GO:0008361: regulation of cell size	9.52E-03
97	GO:0010102: lateral root morphogenesis	1.04E-02
98	GO:0050826: response to freezing	1.04E-02
99	GO:0006094: gluconeogenesis	1.04E-02
100	GO:0009965: leaf morphogenesis	1.05E-02
101	GO:0031347: regulation of defense response	1.13E-02
102	GO:0009266: response to temperature stimulus	1.13E-02
103	GO:0042343: indole glucosinolate metabolic process	1.23E-02
104	GO:0046854: phosphatidylinositol phosphorylation	1.23E-02
105	GO:0009809: lignin biosynthetic process	1.26E-02
106	GO:0000162: tryptophan biosynthetic process	1.33E-02
107	GO:0006636: unsaturated fatty acid biosynthetic process	1.33E-02
108	GO:0006289: nucleotide-excision repair	1.43E-02
109	GO:0006096: glycolytic process	1.49E-02
110	GO:0051302: regulation of cell division	1.53E-02
111	GO:0048367: shoot system development	1.54E-02
112	GO:0044550: secondary metabolite biosynthetic process	1.58E-02
113	GO:0015992: proton transport	1.64E-02
114	GO:0009620: response to fungus	1.64E-02
115	GO:0051260: protein homooligomerization	1.64E-02
116	GO:0098542: defense response to other organism	1.64E-02
117	GO:0010431: seed maturation	1.64E-02
118	GO:0030245: cellulose catabolic process	1.75E-02
119	GO:0016226: iron-sulfur cluster assembly	1.75E-02
120	GO:0007005: mitochondrion organization	1.75E-02
121	GO:0009624: response to nematode	1.79E-02
122	GO:0071215: cellular response to abscisic acid stimulus	1.86E-02
123	GO:0009625: response to insect	1.86E-02
124	GO:0010584: pollen exine formation	1.97E-02
125	GO:0006817: phosphate ion transport	1.97E-02
126	GO:0009561: megagametogenesis	1.97E-02
127	GO:0010089: xylem development	1.97E-02
128	GO:0042631: cellular response to water deprivation	2.21E-02
129	GO:0008033: tRNA processing	2.21E-02
130	GO:0010118: stomatal movement	2.21E-02
131	GO:0045489: pectin biosynthetic process	2.33E-02
132	GO:0006520: cellular amino acid metabolic process	2.33E-02
133	GO:0009845: seed germination	2.43E-02
134	GO:0048364: root development	2.45E-02
135	GO:0010183: pollen tube guidance	2.58E-02
136	GO:0009749: response to glucose	2.58E-02
137	GO:0006635: fatty acid beta-oxidation	2.71E-02
138	GO:0006413: translational initiation	2.89E-02
139	GO:0000910: cytokinesis	3.38E-02
140	GO:0010029: regulation of seed germination	3.66E-02
141	GO:0042742: defense response to bacterium	3.88E-02
142	GO:0071555: cell wall organization	3.88E-02
143	GO:0048573: photoperiodism, flowering	3.95E-02
144	GO:0006950: response to stress	3.95E-02
145	GO:0009817: defense response to fungus, incompatible interaction	4.25E-02
146	GO:0009407: toxin catabolic process	4.55E-02
147	GO:0009611: response to wounding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
3	GO:0010176: homogentisate phytyltransferase activity	0.00E+00
4	GO:0003796: lysozyme activity	0.00E+00
5	GO:0008752: FMN reductase activity	0.00E+00
6	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
7	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
8	GO:0003735: structural constituent of ribosome	1.82E-64
9	GO:0003729: mRNA binding	2.25E-14
10	GO:0015288: porin activity	6.07E-08
11	GO:0008308: voltage-gated anion channel activity	1.03E-07
12	GO:0004601: peroxidase activity	6.40E-07
13	GO:0020037: heme binding	2.58E-06
14	GO:0004617: phosphoglycerate dehydrogenase activity	3.41E-06
15	GO:0019843: rRNA binding	9.76E-06
16	GO:0008097: 5S rRNA binding	2.76E-05
17	GO:0000824: inositol tetrakisphosphate 3-kinase activity	2.72E-04
18	GO:0004048: anthranilate phosphoribosyltransferase activity	2.72E-04
19	GO:0047326: inositol tetrakisphosphate 5-kinase activity	2.72E-04
20	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	2.72E-04
21	GO:0090448: glucosinolate:proton symporter activity	2.72E-04
22	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	2.72E-04
23	GO:1990259: histone-glutamine methyltransferase activity	2.72E-04
24	GO:0032934: sterol binding	5.99E-04
25	GO:0005078: MAP-kinase scaffold activity	5.99E-04
26	GO:0008517: folic acid transporter activity	5.99E-04
27	GO:0004618: phosphoglycerate kinase activity	5.99E-04
28	GO:0004047: aminomethyltransferase activity	5.99E-04
29	GO:0008289: lipid binding	6.00E-04
30	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.33E-04
31	GO:0015266: protein channel activity	8.06E-04
32	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	9.72E-04
33	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.72E-04
34	GO:0008649: rRNA methyltransferase activity	9.72E-04
35	GO:0005457: GDP-fucose transmembrane transporter activity	9.72E-04
36	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.72E-04
37	GO:0019201: nucleotide kinase activity	1.39E-03
38	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.39E-03
39	GO:0005460: UDP-glucose transmembrane transporter activity	1.39E-03
40	GO:0017089: glycolipid transporter activity	1.39E-03
41	GO:0051287: NAD binding	1.72E-03
42	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.86E-03
43	GO:0070628: proteasome binding	1.86E-03
44	GO:0008022: protein C-terminus binding	1.86E-03
45	GO:0004659: prenyltransferase activity	1.86E-03
46	GO:0010011: auxin binding	1.86E-03
47	GO:0051861: glycolipid binding	1.86E-03
48	GO:0005459: UDP-galactose transmembrane transporter activity	2.37E-03
49	GO:0005496: steroid binding	2.37E-03
50	GO:0005199: structural constituent of cell wall	2.45E-03
51	GO:0004332: fructose-bisphosphate aldolase activity	2.93E-03
52	GO:0031593: polyubiquitin binding	2.93E-03
53	GO:0031177: phosphopantetheine binding	2.93E-03
54	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.93E-03
55	GO:0035252: UDP-xylosyltransferase activity	2.93E-03
56	GO:0004866: endopeptidase inhibitor activity	2.93E-03
57	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.52E-03
58	GO:0004017: adenylate kinase activity	3.52E-03
59	GO:0000035: acyl binding	3.52E-03
60	GO:0004656: procollagen-proline 4-dioxygenase activity	3.52E-03
61	GO:0051920: peroxiredoxin activity	3.52E-03
62	GO:0016597: amino acid binding	4.12E-03
63	GO:0016831: carboxy-lyase activity	4.15E-03
64	GO:0005338: nucleotide-sugar transmembrane transporter activity	4.15E-03
65	GO:0008235: metalloexopeptidase activity	4.15E-03
66	GO:0030515: snoRNA binding	4.15E-03
67	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.82E-03
68	GO:0052747: sinapyl alcohol dehydrogenase activity	4.82E-03
69	GO:0016209: antioxidant activity	4.82E-03
70	GO:0004568: chitinase activity	7.82E-03
71	GO:0004129: cytochrome-c oxidase activity	8.66E-03
72	GO:0008515: sucrose transmembrane transporter activity	8.66E-03
73	GO:0008559: xenobiotic-transporting ATPase activity	8.66E-03
74	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.52E-03
75	GO:0051119: sugar transmembrane transporter activity	1.23E-02
76	GO:0005506: iron ion binding	1.23E-02
77	GO:0043130: ubiquitin binding	1.43E-02
78	GO:0008134: transcription factor binding	1.43E-02
79	GO:0031418: L-ascorbic acid binding	1.43E-02
80	GO:0051087: chaperone binding	1.53E-02
81	GO:0004298: threonine-type endopeptidase activity	1.64E-02
82	GO:0008810: cellulase activity	1.86E-02
83	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.96E-02
84	GO:0008514: organic anion transmembrane transporter activity	1.97E-02
85	GO:0019825: oxygen binding	2.32E-02
86	GO:0010181: FMN binding	2.45E-02
87	GO:0004872: receptor activity	2.58E-02
88	GO:0003684: damaged DNA binding	3.10E-02
89	GO:0046872: metal ion binding	3.86E-02
90	GO:0050897: cobalt ion binding	4.71E-02
91	GO:0030145: manganese ion binding	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0022625: cytosolic large ribosomal subunit	3.98E-45
2	GO:0005840: ribosome	4.64E-42
3	GO:0022626: cytosolic ribosome	2.54E-40
4	GO:0022627: cytosolic small ribosomal subunit	8.77E-30
5	GO:0005730: nucleolus	5.83E-15
6	GO:0009506: plasmodesma	2.90E-12
7	GO:0016020: membrane	5.09E-12
8	GO:0005829: cytosol	2.03E-11
9	GO:0005737: cytoplasm	2.03E-10
10	GO:0005773: vacuole	2.17E-10
11	GO:0005774: vacuolar membrane	2.61E-09
12	GO:0005618: cell wall	7.27E-09
13	GO:0046930: pore complex	1.03E-07
14	GO:0005741: mitochondrial outer membrane	4.53E-06
15	GO:0015934: large ribosomal subunit	5.89E-06
16	GO:0005886: plasma membrane	2.52E-05
17	GO:0005742: mitochondrial outer membrane translocase complex	3.23E-04
18	GO:0009530: primary cell wall	9.72E-04
19	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.86E-03
20	GO:0000502: proteasome complex	1.97E-03
21	GO:0031428: box C/D snoRNP complex	2.93E-03
22	GO:0009707: chloroplast outer membrane	5.68E-03
23	GO:0009536: plastid	5.85E-03
24	GO:0000325: plant-type vacuole	6.57E-03
25	GO:0015030: Cajal body	7.03E-03
26	GO:0005740: mitochondrial envelope	7.82E-03
27	GO:0031307: integral component of mitochondrial outer membrane	9.52E-03
28	GO:0032040: small-subunit processome	9.52E-03
29	GO:0009570: chloroplast stroma	1.22E-02
30	GO:0005758: mitochondrial intermembrane space	1.43E-02
31	GO:0070469: respiratory chain	1.53E-02
32	GO:0009507: chloroplast	1.61E-02
33	GO:0005839: proteasome core complex	1.64E-02
34	GO:0015935: small ribosomal subunit	1.64E-02
35	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.97E-02
36	GO:0005743: mitochondrial inner membrane	2.12E-02
37	GO:0005759: mitochondrial matrix	2.82E-02
38	GO:0016592: mediator complex	2.84E-02
39	GO:0071944: cell periphery	2.97E-02
40	GO:0005783: endoplasmic reticulum	3.23E-02
41	GO:0030529: intracellular ribonucleoprotein complex	3.52E-02
42	GO:0005788: endoplasmic reticulum lumen	3.66E-02
43	GO:0000786: nucleosome	4.86E-02