co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G07690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:0000740: nuclear membrane fusion	0.00E+00
3	GO:0006592: ornithine biosynthetic process	0.00E+00
4	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
5	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
6	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
7	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
8	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
9	GO:0006412: translation	1.28E-15
10	GO:0042254: ribosome biogenesis	1.54E-09
11	GO:0006511: ubiquitin-dependent protein catabolic process	1.67E-07
12	GO:1902626: assembly of large subunit precursor of preribosome	1.07E-05
13	GO:0046686: response to cadmium ion	5.06E-05
14	GO:0006457: protein folding	6.94E-05
15	GO:0000027: ribosomal large subunit assembly	7.61E-05
16	GO:0009651: response to salt stress	1.92E-04
17	GO:0031540: regulation of anthocyanin biosynthetic process	2.35E-04
18	GO:0000028: ribosomal small subunit assembly	2.35E-04
19	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	2.53E-04
20	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.53E-04
21	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.53E-04
22	GO:0006407: rRNA export from nucleus	2.53E-04
23	GO:0043687: post-translational protein modification	2.53E-04
24	GO:0010265: SCF complex assembly	2.53E-04
25	GO:0061014: positive regulation of mRNA catabolic process	2.53E-04
26	GO:0051603: proteolysis involved in cellular protein catabolic process	2.61E-04
27	GO:0045901: positive regulation of translational elongation	5.59E-04
28	GO:0045041: protein import into mitochondrial intermembrane space	5.59E-04
29	GO:0006452: translational frameshifting	5.59E-04
30	GO:0010198: synergid death	5.59E-04
31	GO:0015786: UDP-glucose transport	5.59E-04
32	GO:0051788: response to misfolded protein	5.59E-04
33	GO:0006432: phenylalanyl-tRNA aminoacylation	5.59E-04
34	GO:0006435: threonyl-tRNA aminoacylation	5.59E-04
35	GO:0045905: positive regulation of translational termination	5.59E-04
36	GO:0006820: anion transport	6.42E-04
37	GO:0006626: protein targeting to mitochondrion	7.28E-04
38	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	9.07E-04
39	GO:0015783: GDP-fucose transport	9.07E-04
40	GO:0042256: mature ribosome assembly	9.07E-04
41	GO:0008333: endosome to lysosome transport	9.07E-04
42	GO:0055074: calcium ion homeostasis	9.07E-04
43	GO:0046417: chorismate metabolic process	9.07E-04
44	GO:0045793: positive regulation of cell size	9.07E-04
45	GO:0034976: response to endoplasmic reticulum stress	1.01E-03
46	GO:0032877: positive regulation of DNA endoreduplication	1.29E-03
47	GO:0046836: glycolipid transport	1.29E-03
48	GO:0051259: protein oligomerization	1.29E-03
49	GO:0006166: purine ribonucleoside salvage	1.29E-03
50	GO:0070301: cellular response to hydrogen peroxide	1.29E-03
51	GO:0051085: chaperone mediated protein folding requiring cofactor	1.29E-03
52	GO:0006107: oxaloacetate metabolic process	1.29E-03
53	GO:0006241: CTP biosynthetic process	1.29E-03
54	GO:0072334: UDP-galactose transmembrane transport	1.29E-03
55	GO:0009647: skotomorphogenesis	1.29E-03
56	GO:0010587: miRNA catabolic process	1.29E-03
57	GO:0006165: nucleoside diphosphate phosphorylation	1.29E-03
58	GO:0009743: response to carbohydrate	1.29E-03
59	GO:0006228: UTP biosynthetic process	1.29E-03
60	GO:0006168: adenine salvage	1.29E-03
61	GO:0009558: embryo sac cellularization	1.29E-03
62	GO:0006882: cellular zinc ion homeostasis	1.29E-03
63	GO:0001676: long-chain fatty acid metabolic process	1.29E-03
64	GO:0046513: ceramide biosynthetic process	1.29E-03
65	GO:0051781: positive regulation of cell division	1.73E-03
66	GO:0048442: sepal development	1.73E-03
67	GO:0010387: COP9 signalosome assembly	1.73E-03
68	GO:0006183: GTP biosynthetic process	1.73E-03
69	GO:0010363: regulation of plant-type hypersensitive response	1.73E-03
70	GO:0006621: protein retention in ER lumen	1.73E-03
71	GO:0006221: pyrimidine nucleotide biosynthetic process	1.73E-03
72	GO:0044205: 'de novo' UMP biosynthetic process	1.73E-03
73	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.73E-03
74	GO:0009793: embryo development ending in seed dormancy	1.96E-03
75	GO:1902183: regulation of shoot apical meristem development	2.21E-03
76	GO:0044209: AMP salvage	2.21E-03
77	GO:0045116: protein neddylation	2.21E-03
78	GO:2000762: regulation of phenylpropanoid metabolic process	2.21E-03
79	GO:0018279: protein N-linked glycosylation via asparagine	2.21E-03
80	GO:0036065: fucosylation	2.21E-03
81	GO:0009553: embryo sac development	2.59E-03
82	GO:0043248: proteasome assembly	2.72E-03
83	GO:0009630: gravitropism	2.90E-03
84	GO:0030163: protein catabolic process	3.09E-03
85	GO:1901001: negative regulation of response to salt stress	3.27E-03
86	GO:0009612: response to mechanical stimulus	3.27E-03
87	GO:0042026: protein refolding	3.27E-03
88	GO:0006458: 'de novo' protein folding	3.27E-03
89	GO:0000245: spliceosomal complex assembly	3.27E-03
90	GO:0009554: megasporogenesis	3.27E-03
91	GO:0010286: heat acclimation	3.49E-03
92	GO:0045454: cell redox homeostasis	3.54E-03
93	GO:0032880: regulation of protein localization	3.86E-03
94	GO:0048528: post-embryonic root development	3.86E-03
95	GO:0071446: cellular response to salicylic acid stimulus	3.86E-03
96	GO:0070370: cellular heat acclimation	3.86E-03
97	GO:0000338: protein deneddylation	3.86E-03
98	GO:0015937: coenzyme A biosynthetic process	3.86E-03
99	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	3.86E-03
100	GO:0040029: regulation of gene expression, epigenetic	4.48E-03
101	GO:0006402: mRNA catabolic process	4.48E-03
102	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.48E-03
103	GO:0009690: cytokinin metabolic process	4.48E-03
104	GO:0050821: protein stabilization	4.48E-03
105	GO:0009408: response to heat	4.86E-03
106	GO:0006526: arginine biosynthetic process	5.13E-03
107	GO:0010204: defense response signaling pathway, resistance gene-independent	5.13E-03
108	GO:0007389: pattern specification process	5.13E-03
109	GO:0015780: nucleotide-sugar transport	5.81E-03
110	GO:0098656: anion transmembrane transport	5.81E-03
111	GO:0046685: response to arsenic-containing substance	5.81E-03
112	GO:0009245: lipid A biosynthetic process	5.81E-03
113	GO:0048589: developmental growth	5.81E-03
114	GO:0010043: response to zinc ion	5.91E-03
115	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.22E-03
116	GO:0071577: zinc II ion transmembrane transport	6.52E-03
117	GO:0042761: very long-chain fatty acid biosynthetic process	6.52E-03
118	GO:0010449: root meristem growth	6.52E-03
119	GO:0043069: negative regulation of programmed cell death	7.26E-03
120	GO:0048829: root cap development	7.26E-03
121	GO:0045036: protein targeting to chloroplast	7.26E-03
122	GO:0048441: petal development	7.26E-03
123	GO:0006631: fatty acid metabolic process	7.70E-03
124	GO:0009698: phenylpropanoid metabolic process	8.04E-03
125	GO:0009073: aromatic amino acid family biosynthetic process	8.04E-03
126	GO:0015770: sucrose transport	8.04E-03
127	GO:0048229: gametophyte development	8.04E-03
128	GO:0008283: cell proliferation	8.35E-03
129	GO:0008643: carbohydrate transport	9.04E-03
130	GO:0006108: malate metabolic process	9.66E-03
131	GO:0006807: nitrogen compound metabolic process	9.66E-03
132	GO:0009735: response to cytokinin	1.01E-02
133	GO:0048467: gynoecium development	1.05E-02
134	GO:0002237: response to molecule of bacterial origin	1.05E-02
135	GO:0007034: vacuolar transport	1.05E-02
136	GO:0009969: xyloglucan biosynthetic process	1.14E-02
137	GO:0006071: glycerol metabolic process	1.23E-02
138	GO:0006487: protein N-linked glycosylation	1.32E-02
139	GO:0009116: nucleoside metabolic process	1.32E-02
140	GO:0030150: protein import into mitochondrial matrix	1.32E-02
141	GO:0006289: nucleotide-excision repair	1.32E-02
142	GO:0006096: glycolytic process	1.34E-02
143	GO:0051260: protein homooligomerization	1.52E-02
144	GO:0010431: seed maturation	1.52E-02
145	GO:0061077: chaperone-mediated protein folding	1.52E-02
146	GO:0007005: mitochondrion organization	1.62E-02
147	GO:0001944: vasculature development	1.72E-02
148	GO:0006012: galactose metabolic process	1.72E-02
149	GO:0010089: xylem development	1.83E-02
150	GO:0010584: pollen exine formation	1.83E-02
151	GO:0042147: retrograde transport, endosome to Golgi	1.94E-02
152	GO:0010051: xylem and phloem pattern formation	2.05E-02
153	GO:0010118: stomatal movement	2.05E-02
154	GO:0000413: protein peptidyl-prolyl isomerization	2.05E-02
155	GO:0048868: pollen tube development	2.16E-02
156	GO:0008360: regulation of cell shape	2.16E-02
157	GO:0010154: fruit development	2.16E-02
158	GO:0010197: polar nucleus fusion	2.16E-02
159	GO:0015986: ATP synthesis coupled proton transport	2.27E-02
160	GO:0009556: microsporogenesis	2.39E-02
161	GO:0006623: protein targeting to vacuole	2.39E-02
162	GO:0010183: pollen tube guidance	2.39E-02
163	GO:0048825: cotyledon development	2.39E-02
164	GO:0009749: response to glucose	2.39E-02
165	GO:0080156: mitochondrial mRNA modification	2.51E-02
166	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.51E-02
167	GO:0010193: response to ozone	2.51E-02
168	GO:0009567: double fertilization forming a zygote and endosperm	2.87E-02
169	GO:0009734: auxin-activated signaling pathway	3.11E-02
170	GO:0000910: cytokinesis	3.13E-02
171	GO:0016579: protein deubiquitination	3.13E-02
172	GO:0009627: systemic acquired resistance	3.52E-02
173	GO:0016049: cell growth	3.80E-02
174	GO:0009832: plant-type cell wall biogenesis	4.08E-02
175	GO:0009826: unidimensional cell growth	4.14E-02
176	GO:0006811: ion transport	4.22E-02
177	GO:0051301: cell division	4.60E-02
178	GO:0009860: pollen tube growth	4.63E-02
179	GO:0045087: innate immune response	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
2	GO:0008752: FMN reductase activity	0.00E+00
3	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
4	GO:0016881: acid-amino acid ligase activity	0.00E+00
5	GO:0050152: omega-amidase activity	0.00E+00
6	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
7	GO:0004151: dihydroorotase activity	0.00E+00
8	GO:0008777: acetylornithine deacetylase activity	0.00E+00
9	GO:0003735: structural constituent of ribosome	1.65E-20
10	GO:0004298: threonine-type endopeptidase activity	1.09E-15
11	GO:0008233: peptidase activity	4.22E-13
12	GO:0003729: mRNA binding	1.73E-09
13	GO:0004576: oligosaccharyl transferase activity	4.39E-05
14	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	7.01E-05
15	GO:0015288: porin activity	2.35E-04
16	GO:0035614: snRNA stem-loop binding	2.53E-04
17	GO:0016817: hydrolase activity, acting on acid anhydrides	2.53E-04
18	GO:0000824: inositol tetrakisphosphate 3-kinase activity	2.53E-04
19	GO:0047326: inositol tetrakisphosphate 5-kinase activity	2.53E-04
20	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	2.53E-04
21	GO:0030544: Hsp70 protein binding	2.53E-04
22	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	2.53E-04
23	GO:0008308: voltage-gated anion channel activity	2.90E-04
24	GO:0051082: unfolded protein binding	4.35E-04
25	GO:0004634: phosphopyruvate hydratase activity	5.59E-04
26	GO:0050291: sphingosine N-acyltransferase activity	5.59E-04
27	GO:0004618: phosphoglycerate kinase activity	5.59E-04
28	GO:0004594: pantothenate kinase activity	5.59E-04
29	GO:0019781: NEDD8 activating enzyme activity	5.59E-04
30	GO:1990585: hydroxyproline O-arabinosyltransferase activity	5.59E-04
31	GO:0004534: 5'-3' exoribonuclease activity	5.59E-04
32	GO:0004106: chorismate mutase activity	5.59E-04
33	GO:0004829: threonine-tRNA ligase activity	5.59E-04
34	GO:0004826: phenylalanine-tRNA ligase activity	5.59E-04
35	GO:0008517: folic acid transporter activity	5.59E-04
36	GO:0030619: U1 snRNA binding	5.59E-04
37	GO:0008559: xenobiotic-transporting ATPase activity	5.62E-04
38	GO:0031072: heat shock protein binding	7.28E-04
39	GO:0005457: GDP-fucose transmembrane transporter activity	9.07E-04
40	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.07E-04
41	GO:0008097: 5S rRNA binding	1.29E-03
42	GO:0035198: miRNA binding	1.29E-03
43	GO:0017089: glycolipid transporter activity	1.29E-03
44	GO:0003999: adenine phosphoribosyltransferase activity	1.29E-03
45	GO:0005460: UDP-glucose transmembrane transporter activity	1.29E-03
46	GO:0004550: nucleoside diphosphate kinase activity	1.29E-03
47	GO:0010011: auxin binding	1.73E-03
48	GO:0008409: 5'-3' exonuclease activity	1.73E-03
49	GO:0051861: glycolipid binding	1.73E-03
50	GO:0046923: ER retention sequence binding	1.73E-03
51	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.73E-03
52	GO:0070628: proteasome binding	1.73E-03
53	GO:0008514: organic anion transmembrane transporter activity	1.75E-03
54	GO:0003756: protein disulfide isomerase activity	1.75E-03
55	GO:0005459: UDP-galactose transmembrane transporter activity	2.21E-03
56	GO:0008641: small protein activating enzyme activity	2.21E-03
57	GO:0004888: transmembrane signaling receptor activity	2.21E-03
58	GO:0004040: amidase activity	2.21E-03
59	GO:0016853: isomerase activity	2.37E-03
60	GO:0004872: receptor activity	2.54E-03
61	GO:0031593: polyubiquitin binding	2.72E-03
62	GO:0031177: phosphopantetheine binding	2.72E-03
63	GO:0102391: decanoate--CoA ligase activity	3.27E-03
64	GO:0000035: acyl binding	3.27E-03
65	GO:0004656: procollagen-proline 4-dioxygenase activity	3.27E-03
66	GO:0008237: metallopeptidase activity	3.49E-03
67	GO:0004467: long-chain fatty acid-CoA ligase activity	3.86E-03
68	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.86E-03
69	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.86E-03
70	GO:0042162: telomeric DNA binding	3.86E-03
71	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.48E-03
72	GO:0004034: aldose 1-epimerase activity	4.48E-03
73	GO:0043022: ribosome binding	4.48E-03
74	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.11E-03
75	GO:0008417: fucosyltransferase activity	5.81E-03
76	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.81E-03
77	GO:0000989: transcription factor activity, transcription factor binding	5.81E-03
78	GO:0003746: translation elongation factor activity	6.48E-03
79	GO:0003697: single-stranded DNA binding	6.48E-03
80	GO:0044183: protein binding involved in protein folding	8.04E-03
81	GO:0008515: sucrose transmembrane transporter activity	8.04E-03
82	GO:0008794: arsenate reductase (glutaredoxin) activity	8.04E-03
83	GO:0000049: tRNA binding	8.83E-03
84	GO:0005515: protein binding	8.91E-03
85	GO:0015266: protein channel activity	9.66E-03
86	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.76E-03
87	GO:0008266: poly(U) RNA binding	1.05E-02
88	GO:0051119: sugar transmembrane transporter activity	1.14E-02
89	GO:0031418: L-ascorbic acid binding	1.32E-02
90	GO:0005385: zinc ion transmembrane transporter activity	1.32E-02
91	GO:0043130: ubiquitin binding	1.32E-02
92	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.52E-02
93	GO:0004540: ribonuclease activity	1.52E-02
94	GO:0019843: rRNA binding	2.02E-02
95	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.07E-02
96	GO:0046873: metal ion transmembrane transporter activity	2.16E-02
97	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.16E-02
98	GO:0010181: FMN binding	2.27E-02
99	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.75E-02
100	GO:0046872: metal ion binding	2.78E-02
101	GO:0003684: damaged DNA binding	2.87E-02
102	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.54E-02
103	GO:0005524: ATP binding	4.21E-02
104	GO:0050897: cobalt ion binding	4.36E-02
105	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.66E-02
106	GO:0003993: acid phosphatase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0022626: cytosolic ribosome	2.42E-22
2	GO:0005829: cytosol	9.44E-20
3	GO:0000502: proteasome complex	7.52E-16
4	GO:0022625: cytosolic large ribosomal subunit	1.05E-15
5	GO:0005839: proteasome core complex	1.09E-15
6	GO:0005774: vacuolar membrane	1.70E-14
7	GO:0005840: ribosome	1.02E-12
8	GO:0019773: proteasome core complex, alpha-subunit complex	5.58E-10
9	GO:0005737: cytoplasm	2.02E-07
10	GO:0005886: plasma membrane	9.80E-07
11	GO:0022627: cytosolic small ribosomal subunit	3.41E-06
12	GO:0009506: plasmodesma	3.79E-06
13	GO:0005783: endoplasmic reticulum	5.40E-06
14	GO:0016020: membrane	4.82E-05
15	GO:0008250: oligosaccharyltransferase complex	7.01E-05
16	GO:0015934: large ribosomal subunit	7.90E-05
17	GO:0005773: vacuole	9.02E-05
18	GO:0005741: mitochondrial outer membrane	1.02E-04
19	GO:0030686: 90S preribosome	2.53E-04
20	GO:0005730: nucleolus	2.78E-04
21	GO:0046930: pore complex	2.90E-04
22	GO:0005788: endoplasmic reticulum lumen	4.92E-04
23	GO:0000015: phosphopyruvate hydratase complex	5.59E-04
24	GO:0005697: telomerase holoenzyme complex	5.59E-04
25	GO:0046861: glyoxysomal membrane	9.07E-04
26	GO:0005794: Golgi apparatus	1.24E-03
27	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.73E-03
28	GO:0005844: polysome	1.73E-03
29	GO:0005618: cell wall	2.62E-03
30	GO:0005771: multivesicular body	2.72E-03
31	GO:0030904: retromer complex	2.72E-03
32	GO:0005801: cis-Golgi network	3.27E-03
33	GO:0009514: glyoxysome	5.13E-03
34	GO:0005742: mitochondrial outer membrane translocase complex	5.13E-03
35	GO:0009507: chloroplast	5.31E-03
36	GO:0010494: cytoplasmic stress granule	5.81E-03
37	GO:0008180: COP9 signalosome	5.81E-03
38	GO:0005685: U1 snRNP	5.81E-03
39	GO:0000325: plant-type vacuole	5.91E-03
40	GO:0005740: mitochondrial envelope	7.26E-03
41	GO:0008541: proteasome regulatory particle, lid subcomplex	8.04E-03
42	GO:0048471: perinuclear region of cytoplasm	8.04E-03
43	GO:0009508: plastid chromosome	9.66E-03
44	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.14E-02
45	GO:0005769: early endosome	1.23E-02
46	GO:0005758: mitochondrial intermembrane space	1.32E-02
47	GO:0070469: respiratory chain	1.42E-02
48	GO:0048046: apoplast	1.51E-02
49	GO:0015935: small ribosomal subunit	1.52E-02
50	GO:0005802: trans-Golgi network	2.35E-02
51	GO:0032580: Golgi cisterna membrane	2.87E-02
52	GO:0009295: nucleoid	3.00E-02
53	GO:0000932: P-body	3.26E-02
54	GO:0009707: chloroplast outer membrane	3.93E-02
55	GO:0005777: peroxisome	4.89E-02
56	GO:0005819: spindle	4.95E-02