co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G07640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046487: glyoxylate metabolic process	0.00E+00
2	GO:0006511: ubiquitin-dependent protein catabolic process	6.10E-14
3	GO:0051603: proteolysis involved in cellular protein catabolic process	1.47E-05
4	GO:0043248: proteasome assembly	1.65E-05
5	GO:0042964: thioredoxin reduction	8.25E-05
6	GO:0032365: intracellular lipid transport	8.25E-05
7	GO:1901703: protein localization involved in auxin polar transport	1.97E-04
8	GO:0006435: threonyl-tRNA aminoacylation	1.97E-04
9	GO:0006420: arginyl-tRNA aminoacylation	1.97E-04
10	GO:0051788: response to misfolded protein	1.97E-04
11	GO:0000027: ribosomal large subunit assembly	2.48E-04
12	GO:1904278: positive regulation of wax biosynthetic process	3.29E-04
13	GO:1902626: assembly of large subunit precursor of preribosome	3.29E-04
14	GO:0046417: chorismate metabolic process	3.29E-04
15	GO:0060145: viral gene silencing in virus induced gene silencing	3.29E-04
16	GO:0045039: protein import into mitochondrial inner membrane	3.29E-04
17	GO:0010452: histone H3-K36 methylation	3.29E-04
18	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	3.29E-04
19	GO:0010498: proteasomal protein catabolic process	3.29E-04
20	GO:0009647: skotomorphogenesis	4.75E-04
21	GO:0010255: glucose mediated signaling pathway	4.75E-04
22	GO:0051259: protein oligomerization	4.75E-04
23	GO:0046653: tetrahydrofolate metabolic process	4.75E-04
24	GO:0051205: protein insertion into membrane	6.32E-04
25	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	8.79E-04
26	GO:0006014: D-ribose metabolic process	9.77E-04
27	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	9.77E-04
28	GO:0051568: histone H3-K4 methylation	9.77E-04
29	GO:0016049: cell growth	1.06E-03
30	GO:0009554: megasporogenesis	1.16E-03
31	GO:0010043: response to zinc ion	1.28E-03
32	GO:0009396: folic acid-containing compound biosynthetic process	1.36E-03
33	GO:0006826: iron ion transport	1.36E-03
34	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.36E-03
35	GO:0032880: regulation of protein localization	1.36E-03
36	GO:0098869: cellular oxidant detoxification	1.36E-03
37	GO:0048528: post-embryonic root development	1.36E-03
38	GO:0050821: protein stabilization	1.57E-03
39	GO:0031540: regulation of anthocyanin biosynthetic process	1.57E-03
40	GO:0019430: removal of superoxide radicals	1.79E-03
41	GO:0098656: anion transmembrane transport	2.02E-03
42	GO:0009245: lipid A biosynthetic process	2.02E-03
43	GO:0045454: cell redox homeostasis	2.15E-03
44	GO:0010267: production of ta-siRNAs involved in RNA interference	2.26E-03
45	GO:0010449: root meristem growth	2.26E-03
46	GO:0035999: tetrahydrofolate interconversion	2.26E-03
47	GO:0045036: protein targeting to chloroplast	2.51E-03
48	GO:0016441: posttranscriptional gene silencing	2.51E-03
49	GO:0009073: aromatic amino acid family biosynthetic process	2.77E-03
50	GO:0016485: protein processing	2.77E-03
51	GO:0048229: gametophyte development	2.77E-03
52	GO:0006820: anion transport	3.03E-03
53	GO:0009553: embryo sac development	3.30E-03
54	GO:0006626: protein targeting to mitochondrion	3.31E-03
55	GO:0010102: lateral root morphogenesis	3.31E-03
56	GO:0048467: gynoecium development	3.59E-03
57	GO:0006412: translation	3.65E-03
58	GO:0010039: response to iron ion	3.88E-03
59	GO:0006406: mRNA export from nucleus	4.48E-03
60	GO:0006289: nucleotide-excision repair	4.48E-03
61	GO:0010073: meristem maintenance	4.80E-03
62	GO:0009908: flower development	5.10E-03
63	GO:0016226: iron-sulfur cluster assembly	5.45E-03
64	GO:0030433: ubiquitin-dependent ERAD pathway	5.45E-03
65	GO:0007005: mitochondrion organization	5.45E-03
66	GO:0006012: galactose metabolic process	5.78E-03
67	GO:0046686: response to cadmium ion	6.18E-03
68	GO:0000413: protein peptidyl-prolyl isomerization	6.83E-03
69	GO:0006662: glycerol ether metabolic process	7.20E-03
70	GO:0048825: cotyledon development	7.95E-03
71	GO:0009556: microsporogenesis	7.95E-03
72	GO:0006635: fatty acid beta-oxidation	8.33E-03
73	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	8.33E-03
74	GO:0009630: gravitropism	8.73E-03
75	GO:0030163: protein catabolic process	9.12E-03
76	GO:0042254: ribosome biogenesis	9.22E-03
77	GO:0010286: heat acclimation	9.94E-03
78	GO:0051607: defense response to virus	1.04E-02
79	GO:0009793: embryo development ending in seed dormancy	1.12E-02
80	GO:0009910: negative regulation of flower development	1.44E-02
81	GO:0000724: double-strand break repair via homologous recombination	1.49E-02
82	GO:0034599: cellular response to oxidative stress	1.59E-02
83	GO:0006839: mitochondrial transport	1.69E-02
84	GO:0008283: cell proliferation	1.84E-02
85	GO:0015031: protein transport	1.92E-02
86	GO:0008643: carbohydrate transport	1.95E-02
87	GO:0009846: pollen germination	2.16E-02
88	GO:0009736: cytokinin-activated signaling pathway	2.28E-02
89	GO:0009734: auxin-activated signaling pathway	2.34E-02
90	GO:0009909: regulation of flower development	2.45E-02
91	GO:0048316: seed development	2.62E-02
92	GO:0009735: response to cytokinin	2.70E-02
93	GO:0051726: regulation of cell cycle	3.05E-02
94	GO:0009845: seed germination	3.63E-02
95	GO:0006457: protein folding	3.82E-02
96	GO:0006633: fatty acid biosynthetic process	4.04E-02
97	GO:0009617: response to bacterium	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0030272: 5-formyltetrahydrofolate cyclo-ligase activity	0.00E+00
2	GO:0004298: threonine-type endopeptidase activity	2.16E-21
3	GO:0008233: peptidase activity	7.45E-16
4	GO:0016817: hydrolase activity, acting on acid anhydrides	8.25E-05
5	GO:0030544: Hsp70 protein binding	8.25E-05
6	GO:1990585: hydroxyproline O-arabinosyltransferase activity	1.97E-04
7	GO:0004106: chorismate mutase activity	1.97E-04
8	GO:0004829: threonine-tRNA ligase activity	1.97E-04
9	GO:0004814: arginine-tRNA ligase activity	1.97E-04
10	GO:0004839: ubiquitin activating enzyme activity	1.97E-04
11	GO:0032934: sterol binding	1.97E-04
12	GO:0004791: thioredoxin-disulfide reductase activity	5.32E-04
13	GO:0003735: structural constituent of ribosome	5.47E-04
14	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.90E-04
15	GO:0004888: transmembrane signaling receptor activity	8.00E-04
16	GO:0008641: small protein activating enzyme activity	8.00E-04
17	GO:0031177: phosphopantetheine binding	9.77E-04
18	GO:0036402: proteasome-activating ATPase activity	9.77E-04
19	GO:0000035: acyl binding	1.16E-03
20	GO:0004747: ribokinase activity	1.16E-03
21	GO:0008235: metalloexopeptidase activity	1.36E-03
22	GO:0015288: porin activity	1.57E-03
23	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.57E-03
24	GO:0004034: aldose 1-epimerase activity	1.57E-03
25	GO:0008308: voltage-gated anion channel activity	1.79E-03
26	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.09E-03
27	GO:0008327: methyl-CpG binding	2.77E-03
28	GO:0004177: aminopeptidase activity	2.77E-03
29	GO:0003725: double-stranded RNA binding	3.31E-03
30	GO:0017025: TBP-class protein binding	3.88E-03
31	GO:0004540: ribonuclease activity	5.12E-03
32	GO:0008514: organic anion transmembrane transporter activity	6.13E-03
33	GO:0047134: protein-disulfide reductase activity	6.48E-03
34	GO:0008237: metallopeptidase activity	9.94E-03
35	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.30E-02
36	GO:0050897: cobalt ion binding	1.44E-02
37	GO:0005515: protein binding	2.33E-02
38	GO:0016874: ligase activity	2.80E-02
39	GO:0022857: transmembrane transporter activity	2.80E-02
40	GO:0000166: nucleotide binding	2.95E-02
41	GO:0015035: protein disulfide oxidoreductase activity	2.99E-02
42	GO:0019843: rRNA binding	3.43E-02
43	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.50E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0005675: holo TFIIH complex	0.00E+00
3	GO:0000502: proteasome complex	1.34E-28
4	GO:0005839: proteasome core complex	2.16E-21
5	GO:0019773: proteasome core complex, alpha-subunit complex	1.69E-14
6	GO:0005829: cytosol	1.05E-06
7	GO:0022626: cytosolic ribosome	1.34E-06
8	GO:0008541: proteasome regulatory particle, lid subcomplex	1.70E-06
9	GO:0031595: nuclear proteasome complex	3.21E-05
10	GO:0005737: cytoplasm	1.71E-04
11	GO:0000439: core TFIIH complex	3.29E-04
12	GO:0016593: Cdc73/Paf1 complex	6.32E-04
13	GO:0005801: cis-Golgi network	1.16E-03
14	GO:0031597: cytosolic proteasome complex	1.16E-03
15	GO:0005774: vacuolar membrane	1.63E-03
16	GO:0046930: pore complex	1.79E-03
17	GO:0022625: cytosolic large ribosomal subunit	1.83E-03
18	GO:0005802: trans-Golgi network	2.21E-03
19	GO:0008540: proteasome regulatory particle, base subcomplex	2.26E-03
20	GO:0005743: mitochondrial inner membrane	2.56E-03
21	GO:0005834: heterotrimeric G-protein complex	3.02E-03
22	GO:0005840: ribosome	3.39E-03
23	GO:0005773: vacuole	3.79E-03
24	GO:0005769: early endosome	4.18E-03
25	GO:0005758: mitochondrial intermembrane space	4.48E-03
26	GO:0070469: respiratory chain	4.80E-03
27	GO:0005741: mitochondrial outer membrane	5.12E-03
28	GO:0005768: endosome	1.24E-02
29	GO:0009707: chloroplast outer membrane	1.30E-02
30	GO:0016020: membrane	1.41E-02
31	GO:0015934: large ribosomal subunit	1.44E-02
32	GO:0005819: spindle	1.64E-02
33	GO:0009536: plastid	1.84E-02
34	GO:0005730: nucleolus	2.75E-02
35	GO:0009706: chloroplast inner membrane	2.93E-02
36	GO:0005732: small nucleolar ribonucleoprotein complex	3.11E-02
37	GO:0009941: chloroplast envelope	3.23E-02
38	GO:0009524: phragmoplast	3.56E-02
39	GO:0005759: mitochondrial matrix	4.04E-02
40	GO:0009705: plant-type vacuole membrane	4.32E-02