co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G07310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0098586: cellular response to virus	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:0007037: vacuolar phosphate transport	0.00E+00
5	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
6	GO:0051246: regulation of protein metabolic process	0.00E+00
7	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
8	GO:0005997: xylulose metabolic process	0.00E+00
9	GO:0006907: pinocytosis	0.00E+00
10	GO:0019685: photosynthesis, dark reaction	0.00E+00
11	GO:0080005: photosystem stoichiometry adjustment	6.94E-06
12	GO:0000256: allantoin catabolic process	6.94E-06
13	GO:0010136: ureide catabolic process	2.42E-05
14	GO:0009658: chloroplast organization	4.33E-05
15	GO:0006145: purine nucleobase catabolic process	5.29E-05
16	GO:2001141: regulation of RNA biosynthetic process	5.29E-05
17	GO:0046653: tetrahydrofolate metabolic process	5.29E-05
18	GO:0009616: virus induced gene silencing	1.45E-04
19	GO:0045038: protein import into chloroplast thylakoid membrane	1.45E-04
20	GO:0016123: xanthophyll biosynthetic process	1.45E-04
21	GO:0007017: microtubule-based process	2.25E-04
22	GO:0010362: negative regulation of anion channel activity by blue light	3.94E-04
23	GO:0033388: putrescine biosynthetic process from arginine	3.94E-04
24	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.94E-04
25	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	3.94E-04
26	GO:1904966: positive regulation of vitamin E biosynthetic process	3.94E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	3.94E-04
28	GO:0042371: vitamin K biosynthetic process	3.94E-04
29	GO:0071454: cellular response to anoxia	3.94E-04
30	GO:0071461: cellular response to redox state	3.94E-04
31	GO:1902458: positive regulation of stomatal opening	3.94E-04
32	GO:0055114: oxidation-reduction process	5.50E-04
33	GO:0071482: cellular response to light stimulus	5.53E-04
34	GO:0009657: plastid organization	5.53E-04
35	GO:0009821: alkaloid biosynthetic process	6.63E-04
36	GO:0009638: phototropism	7.83E-04
37	GO:0046741: transport of virus in host, tissue to tissue	8.55E-04
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.55E-04
39	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	8.55E-04
40	GO:0010115: regulation of abscisic acid biosynthetic process	8.55E-04
41	GO:0048314: embryo sac morphogenesis	8.55E-04
42	GO:0006435: threonyl-tRNA aminoacylation	8.55E-04
43	GO:0050688: regulation of defense response to virus	8.55E-04
44	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	8.55E-04
45	GO:0009446: putrescine biosynthetic process	8.55E-04
46	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.55E-04
47	GO:0080153: negative regulation of reductive pentose-phosphate cycle	8.55E-04
48	GO:0080185: effector dependent induction by symbiont of host immune response	8.55E-04
49	GO:0006352: DNA-templated transcription, initiation	1.05E-03
50	GO:0015995: chlorophyll biosynthetic process	1.27E-03
51	GO:0009767: photosynthetic electron transport chain	1.36E-03
52	GO:0005986: sucrose biosynthetic process	1.36E-03
53	GO:0006013: mannose metabolic process	1.39E-03
54	GO:0071836: nectar secretion	1.39E-03
55	GO:0005977: glycogen metabolic process	1.39E-03
56	GO:0018298: protein-chromophore linkage	1.44E-03
57	GO:0006071: glycerol metabolic process	1.91E-03
58	GO:0090307: mitotic spindle assembly	2.00E-03
59	GO:0006809: nitric oxide biosynthetic process	2.00E-03
60	GO:0051016: barbed-end actin filament capping	2.00E-03
61	GO:0033014: tetrapyrrole biosynthetic process	2.00E-03
62	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	2.00E-03
63	GO:0050482: arachidonic acid secretion	2.00E-03
64	GO:0043572: plastid fission	2.00E-03
65	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.00E-03
66	GO:0010371: regulation of gibberellin biosynthetic process	2.00E-03
67	GO:0009765: photosynthesis, light harvesting	2.69E-03
68	GO:0031122: cytoplasmic microtubule organization	2.69E-03
69	GO:0009902: chloroplast relocation	2.69E-03
70	GO:0010021: amylopectin biosynthetic process	2.69E-03
71	GO:0042274: ribosomal small subunit biogenesis	2.69E-03
72	GO:0031935: regulation of chromatin silencing	2.69E-03
73	GO:0009451: RNA modification	2.80E-03
74	GO:0016120: carotene biosynthetic process	3.44E-03
75	GO:0009793: embryo development ending in seed dormancy	3.63E-03
76	GO:0035194: posttranscriptional gene silencing by RNA	4.26E-03
77	GO:0010190: cytochrome b6f complex assembly	4.26E-03
78	GO:0000741: karyogamy	4.26E-03
79	GO:0006561: proline biosynthetic process	4.26E-03
80	GO:0071470: cellular response to osmotic stress	5.13E-03
81	GO:0010189: vitamin E biosynthetic process	5.13E-03
82	GO:0010019: chloroplast-nucleus signaling pathway	5.13E-03
83	GO:0010193: response to ozone	5.21E-03
84	GO:1900056: negative regulation of leaf senescence	6.06E-03
85	GO:0010050: vegetative phase change	6.06E-03
86	GO:0080111: DNA demethylation	6.06E-03
87	GO:0009396: folic acid-containing compound biosynthetic process	6.06E-03
88	GO:0071805: potassium ion transmembrane transport	6.71E-03
89	GO:0009787: regulation of abscisic acid-activated signaling pathway	7.05E-03
90	GO:0030091: protein repair	7.05E-03
91	GO:0042255: ribosome assembly	7.05E-03
92	GO:0006353: DNA-templated transcription, termination	7.05E-03
93	GO:2000070: regulation of response to water deprivation	7.05E-03
94	GO:0006644: phospholipid metabolic process	7.05E-03
95	GO:0048564: photosystem I assembly	7.05E-03
96	GO:0016126: sterol biosynthetic process	7.54E-03
97	GO:0032544: plastid translation	8.09E-03
98	GO:0044030: regulation of DNA methylation	8.09E-03
99	GO:0010411: xyloglucan metabolic process	8.89E-03
100	GO:0019432: triglyceride biosynthetic process	9.18E-03
101	GO:0006783: heme biosynthetic process	9.18E-03
102	GO:0000373: Group II intron splicing	9.18E-03
103	GO:0006779: porphyrin-containing compound biosynthetic process	1.03E-02
104	GO:0035999: tetrahydrofolate interconversion	1.03E-02
105	GO:0010267: production of ta-siRNAs involved in RNA interference	1.03E-02
106	GO:0010380: regulation of chlorophyll biosynthetic process	1.03E-02
107	GO:1900426: positive regulation of defense response to bacterium	1.03E-02
108	GO:0006811: ion transport	1.09E-02
109	GO:0007568: aging	1.14E-02
110	GO:0051555: flavonol biosynthetic process	1.15E-02
111	GO:0009688: abscisic acid biosynthetic process	1.15E-02
112	GO:0045036: protein targeting to chloroplast	1.15E-02
113	GO:0006259: DNA metabolic process	1.15E-02
114	GO:0009853: photorespiration	1.25E-02
115	GO:0008285: negative regulation of cell proliferation	1.28E-02
116	GO:0006265: DNA topological change	1.28E-02
117	GO:0043085: positive regulation of catalytic activity	1.28E-02
118	GO:0009750: response to fructose	1.28E-02
119	GO:0006807: nitrogen compound metabolic process	1.54E-02
120	GO:0009725: response to hormone	1.54E-02
121	GO:0009744: response to sucrose	1.62E-02
122	GO:0034605: cellular response to heat	1.68E-02
123	GO:0006541: glutamine metabolic process	1.68E-02
124	GO:0010020: chloroplast fission	1.68E-02
125	GO:0010207: photosystem II assembly	1.68E-02
126	GO:0019253: reductive pentose-phosphate cycle	1.68E-02
127	GO:0042546: cell wall biogenesis	1.69E-02
128	GO:0009644: response to high light intensity	1.75E-02
129	GO:0010025: wax biosynthetic process	1.96E-02
130	GO:0006863: purine nucleobase transport	1.96E-02
131	GO:0006833: water transport	1.96E-02
132	GO:0080147: root hair cell development	2.11E-02
133	GO:0006289: nucleotide-excision repair	2.11E-02
134	GO:0006364: rRNA processing	2.19E-02
135	GO:0006813: potassium ion transport	2.19E-02
136	GO:0009695: jasmonic acid biosynthetic process	2.27E-02
137	GO:0010073: meristem maintenance	2.27E-02
138	GO:0051302: regulation of cell division	2.27E-02
139	GO:0006810: transport	2.40E-02
140	GO:0051321: meiotic cell cycle	2.43E-02
141	GO:0005975: carbohydrate metabolic process	2.55E-02
142	GO:0016226: iron-sulfur cluster assembly	2.59E-02
143	GO:0006730: one-carbon metabolic process	2.59E-02
144	GO:0080092: regulation of pollen tube growth	2.59E-02
145	GO:0010227: floral organ abscission	2.75E-02
146	GO:0080167: response to karrikin	2.84E-02
147	GO:0006284: base-excision repair	2.92E-02
148	GO:0009306: protein secretion	2.92E-02
149	GO:0009553: embryo sac development	3.02E-02
150	GO:0070417: cellular response to cold	3.09E-02
151	GO:0016117: carotenoid biosynthetic process	3.09E-02
152	GO:0008033: tRNA processing	3.27E-02
153	GO:0034220: ion transmembrane transport	3.27E-02
154	GO:0010118: stomatal movement	3.27E-02
155	GO:0015979: photosynthesis	3.35E-02
156	GO:0009958: positive gravitropism	3.45E-02
157	GO:0071472: cellular response to salt stress	3.45E-02
158	GO:0010197: polar nucleus fusion	3.45E-02
159	GO:0010182: sugar mediated signaling pathway	3.45E-02
160	GO:0048868: pollen tube development	3.45E-02
161	GO:0007059: chromosome segregation	3.63E-02
162	GO:0009791: post-embryonic development	3.82E-02
163	GO:0019252: starch biosynthetic process	3.82E-02
164	GO:0008654: phospholipid biosynthetic process	3.82E-02
165	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.01E-02
166	GO:0000302: response to reactive oxygen species	4.01E-02
167	GO:0009058: biosynthetic process	4.10E-02
168	GO:0010583: response to cyclopentenone	4.20E-02
169	GO:0032502: developmental process	4.20E-02
170	GO:0007264: small GTPase mediated signal transduction	4.20E-02
171	GO:0055085: transmembrane transport	4.38E-02
172	GO:0006464: cellular protein modification process	4.59E-02
173	GO:0000910: cytokinesis	5.00E-02
174	GO:0051607: defense response to virus	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0008115: sarcosine oxidase activity	0.00E+00
5	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
6	GO:0010276: phytol kinase activity	0.00E+00
7	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
8	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
9	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
10	GO:1990534: thermospermine oxidase activity	0.00E+00
11	GO:0004848: ureidoglycolate hydrolase activity	2.42E-05
12	GO:0016851: magnesium chelatase activity	5.29E-05
13	GO:0016491: oxidoreductase activity	7.23E-05
14	GO:0016987: sigma factor activity	9.33E-05
15	GO:0001053: plastid sigma factor activity	9.33E-05
16	GO:0019899: enzyme binding	3.62E-04
17	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	3.94E-04
18	GO:0004856: xylulokinase activity	3.94E-04
19	GO:0004325: ferrochelatase activity	3.94E-04
20	GO:0008242: omega peptidase activity	3.94E-04
21	GO:0030941: chloroplast targeting sequence binding	3.94E-04
22	GO:0046027: phospholipid:diacylglycerol acyltransferase activity	3.94E-04
23	GO:0046906: tetrapyrrole binding	3.94E-04
24	GO:0048038: quinone binding	6.51E-04
25	GO:0016844: strictosidine synthase activity	7.83E-04
26	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	8.55E-04
27	GO:0004046: aminoacylase activity	8.55E-04
28	GO:0004829: threonine-tRNA ligase activity	8.55E-04
29	GO:0019156: isoamylase activity	8.55E-04
30	GO:0034722: gamma-glutamyl-peptidase activity	8.55E-04
31	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.55E-04
32	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	8.55E-04
33	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.05E-03
34	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.39E-03
35	GO:0046524: sucrose-phosphate synthase activity	1.39E-03
36	GO:0032947: protein complex scaffold	1.39E-03
37	GO:0004148: dihydrolipoyl dehydrogenase activity	1.39E-03
38	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.39E-03
39	GO:0050307: sucrose-phosphate phosphatase activity	1.39E-03
40	GO:0046423: allene-oxide cyclase activity	1.39E-03
41	GO:0004180: carboxypeptidase activity	1.39E-03
42	GO:0000254: C-4 methylsterol oxidase activity	2.00E-03
43	GO:0009882: blue light photoreceptor activity	2.00E-03
44	GO:0015079: potassium ion transmembrane transporter activity	2.34E-03
45	GO:0043015: gamma-tubulin binding	2.69E-03
46	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.69E-03
47	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.69E-03
48	GO:0043495: protein anchor	2.69E-03
49	GO:0051861: glycolipid binding	2.69E-03
50	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.69E-03
51	GO:0022891: substrate-specific transmembrane transporter activity	3.07E-03
52	GO:0003727: single-stranded RNA binding	3.33E-03
53	GO:0008374: O-acyltransferase activity	3.44E-03
54	GO:0051011: microtubule minus-end binding	3.44E-03
55	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.44E-03
56	GO:0004623: phospholipase A2 activity	3.44E-03
57	GO:0005275: amine transmembrane transporter activity	3.44E-03
58	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	3.44E-03
59	GO:0005506: iron ion binding	3.78E-03
60	GO:0000293: ferric-chelate reductase activity	4.26E-03
61	GO:0004556: alpha-amylase activity	4.26E-03
62	GO:0004605: phosphatidate cytidylyltransferase activity	4.26E-03
63	GO:0010181: FMN binding	4.53E-03
64	GO:0015631: tubulin binding	5.13E-03
65	GO:0004559: alpha-mannosidase activity	5.13E-03
66	GO:0016157: sucrose synthase activity	5.13E-03
67	GO:0016762: xyloglucan:xyloglucosyl transferase activity	5.21E-03
68	GO:0008237: metallopeptidase activity	6.71E-03
69	GO:0016168: chlorophyll binding	7.98E-03
70	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	8.09E-03
71	GO:0003724: RNA helicase activity	8.09E-03
72	GO:0019843: rRNA binding	8.26E-03
73	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.54E-03
74	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.89E-03
75	GO:0008889: glycerophosphodiester phosphodiesterase activity	9.18E-03
76	GO:0004519: endonuclease activity	1.50E-02
77	GO:0008081: phosphoric diester hydrolase activity	1.54E-02
78	GO:0004022: alcohol dehydrogenase (NAD) activity	1.54E-02
79	GO:0031072: heat shock protein binding	1.54E-02
80	GO:0000155: phosphorelay sensor kinase activity	1.54E-02
81	GO:0008131: primary amine oxidase activity	1.68E-02
82	GO:0042802: identical protein binding	1.69E-02
83	GO:0008061: chitin binding	1.82E-02
84	GO:0003887: DNA-directed DNA polymerase activity	1.96E-02
85	GO:0051536: iron-sulfur cluster binding	2.11E-02
86	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.19E-02
87	GO:0003690: double-stranded DNA binding	2.26E-02
88	GO:0005345: purine nucleobase transmembrane transporter activity	2.27E-02
89	GO:0003777: microtubule motor activity	2.42E-02
90	GO:0004176: ATP-dependent peptidase activity	2.43E-02
91	GO:0004650: polygalacturonase activity	2.84E-02
92	GO:0003723: RNA binding	3.44E-02
93	GO:0008080: N-acetyltransferase activity	3.45E-02
94	GO:0004872: receptor activity	3.82E-02
95	GO:0004518: nuclease activity	4.20E-02
96	GO:0016829: lyase activity	4.21E-02
97	GO:0003924: GTPase activity	4.59E-02
98	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.63E-02
99	GO:0005200: structural constituent of cytoskeleton	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.50E-25
2	GO:0009535: chloroplast thylakoid membrane	2.96E-07
3	GO:0030286: dynein complex	8.84E-07
4	GO:0031969: chloroplast membrane	7.98E-05
5	GO:0042651: thylakoid membrane	2.25E-04
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.63E-04
7	GO:0080085: signal recognition particle, chloroplast targeting	8.55E-04
8	GO:0008274: gamma-tubulin ring complex	8.55E-04
9	GO:0008290: F-actin capping protein complex	8.55E-04
10	GO:0048471: perinuclear region of cytoplasm	1.05E-03
11	GO:0010007: magnesium chelatase complex	1.39E-03
12	GO:0033281: TAT protein transport complex	1.39E-03
13	GO:0009707: chloroplast outer membrane	1.44E-03
14	GO:0005875: microtubule associated complex	1.91E-03
15	GO:0000923: equatorial microtubule organizing center	2.00E-03
16	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.69E-03
17	GO:0055035: plastid thylakoid membrane	3.44E-03
18	GO:0009523: photosystem II	4.86E-03
19	GO:0009840: chloroplastic endopeptidase Clp complex	5.13E-03
20	GO:0005655: nucleolar ribonuclease P complex	5.13E-03
21	GO:0000123: histone acetyltransferase complex	6.06E-03
22	GO:0031359: integral component of chloroplast outer membrane	6.06E-03
23	GO:0009505: plant-type cell wall	6.39E-03
24	GO:0009295: nucleoid	6.71E-03
25	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	8.09E-03
26	GO:0046930: pore complex	8.09E-03
27	GO:0000922: spindle pole	9.18E-03
28	GO:0009941: chloroplast envelope	9.37E-03
29	GO:0016324: apical plasma membrane	1.15E-02
30	GO:0005773: vacuole	1.29E-02
31	GO:0009508: plastid chromosome	1.54E-02
32	GO:0030095: chloroplast photosystem II	1.68E-02
33	GO:0043234: protein complex	1.96E-02
34	GO:0031966: mitochondrial membrane	2.04E-02
35	GO:0009570: chloroplast stroma	2.23E-02
36	GO:0045271: respiratory chain complex I	2.27E-02
37	GO:0005747: mitochondrial respiratory chain complex I	2.67E-02
38	GO:0009543: chloroplast thylakoid lumen	3.89E-02