Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G07090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
2GO:0032499: detection of peptidoglycan0.00E+00
3GO:2001143: N-methylnicotinate transport0.00E+00
4GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
5GO:0046398: UDP-glucuronate metabolic process0.00E+00
6GO:0052573: UDP-D-galactose metabolic process0.00E+00
7GO:2001142: nicotinate transport0.00E+00
8GO:0032497: detection of lipopolysaccharide0.00E+00
9GO:0042353: fucose biosynthetic process0.00E+00
10GO:0007141: male meiosis I0.00E+00
11GO:0019481: L-alanine catabolic process, by transamination0.00E+00
12GO:0010046: response to mycotoxin0.00E+00
13GO:0010200: response to chitin1.43E-09
14GO:0006468: protein phosphorylation4.05E-06
15GO:0002679: respiratory burst involved in defense response3.55E-05
16GO:1902347: response to strigolactone6.35E-05
17GO:0034440: lipid oxidation6.35E-05
18GO:0009611: response to wounding8.94E-05
19GO:0009695: jasmonic acid biosynthetic process1.40E-04
20GO:0045087: innate immune response1.64E-04
21GO:0080086: stamen filament development1.97E-04
22GO:0006955: immune response2.57E-04
23GO:0034628: 'de novo' NAD biosynthetic process from aspartate3.14E-04
24GO:0051180: vitamin transport3.14E-04
25GO:0010726: positive regulation of hydrogen peroxide metabolic process3.14E-04
26GO:0006562: proline catabolic process3.14E-04
27GO:0030974: thiamine pyrophosphate transport3.14E-04
28GO:0050691: regulation of defense response to virus by host3.14E-04
29GO:0032491: detection of molecule of fungal origin3.14E-04
30GO:1900384: regulation of flavonol biosynthetic process3.14E-04
31GO:0071277: cellular response to calcium ion3.14E-04
32GO:0045010: actin nucleation3.24E-04
33GO:2000070: regulation of response to water deprivation3.24E-04
34GO:0048544: recognition of pollen3.54E-04
35GO:0006952: defense response3.74E-04
36GO:0009555: pollen development3.90E-04
37GO:0010193: response to ozone4.24E-04
38GO:0051865: protein autoubiquitination4.78E-04
39GO:0042742: defense response to bacterium5.68E-04
40GO:0019538: protein metabolic process6.60E-04
41GO:0046939: nucleotide phosphorylation6.87E-04
42GO:0010155: regulation of proton transport6.87E-04
43GO:0010133: proline catabolic process to glutamate6.87E-04
44GO:0042754: negative regulation of circadian rhythm6.87E-04
45GO:0010372: positive regulation of gibberellin biosynthetic process6.87E-04
46GO:2000030: regulation of response to red or far red light6.87E-04
47GO:0031349: positive regulation of defense response6.87E-04
48GO:0015893: drug transport6.87E-04
49GO:0010366: negative regulation of ethylene biosynthetic process1.11E-03
50GO:0006011: UDP-glucose metabolic process1.11E-03
51GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.11E-03
52GO:0080168: abscisic acid transport1.11E-03
53GO:0006598: polyamine catabolic process1.11E-03
54GO:0051176: positive regulation of sulfur metabolic process1.11E-03
55GO:0009737: response to abscisic acid1.21E-03
56GO:0070588: calcium ion transmembrane transport1.24E-03
57GO:0009901: anther dehiscence1.24E-03
58GO:0009863: salicylic acid mediated signaling pathway1.52E-03
59GO:0006537: glutamate biosynthetic process1.60E-03
60GO:0033014: tetrapyrrole biosynthetic process1.60E-03
61GO:0009226: nucleotide-sugar biosynthetic process1.60E-03
62GO:0030100: regulation of endocytosis1.60E-03
63GO:0009399: nitrogen fixation1.60E-03
64GO:0015696: ammonium transport1.60E-03
65GO:0071323: cellular response to chitin1.60E-03
66GO:0051131: chaperone-mediated protein complex assembly1.60E-03
67GO:0046686: response to cadmium ion1.64E-03
68GO:0051707: response to other organism1.76E-03
69GO:0031408: oxylipin biosynthetic process1.84E-03
70GO:0016226: iron-sulfur cluster assembly2.02E-03
71GO:0015743: malate transport2.14E-03
72GO:0033320: UDP-D-xylose biosynthetic process2.14E-03
73GO:0010107: potassium ion import2.14E-03
74GO:0072488: ammonium transmembrane transport2.14E-03
75GO:0006536: glutamate metabolic process2.14E-03
76GO:0071219: cellular response to molecule of bacterial origin2.14E-03
77GO:0033356: UDP-L-arabinose metabolic process2.14E-03
78GO:0009694: jasmonic acid metabolic process2.14E-03
79GO:0040007: growth2.20E-03
80GO:0009686: gibberellin biosynthetic process2.20E-03
81GO:0009435: NAD biosynthetic process2.74E-03
82GO:0009164: nucleoside catabolic process2.74E-03
83GO:0006090: pyruvate metabolic process2.74E-03
84GO:0030041: actin filament polymerization2.74E-03
85GO:0045487: gibberellin catabolic process2.74E-03
86GO:0048653: anther development2.80E-03
87GO:0010942: positive regulation of cell death3.38E-03
88GO:0006751: glutathione catabolic process3.38E-03
89GO:0010256: endomembrane system organization3.38E-03
90GO:0048232: male gamete generation3.38E-03
91GO:0042732: D-xylose metabolic process3.38E-03
92GO:0048317: seed morphogenesis3.38E-03
93GO:0006796: phosphate-containing compound metabolic process3.38E-03
94GO:0010337: regulation of salicylic acid metabolic process3.38E-03
95GO:0006014: D-ribose metabolic process3.38E-03
96GO:0006970: response to osmotic stress3.52E-03
97GO:0009620: response to fungus3.59E-03
98GO:0002229: defense response to oomycetes3.72E-03
99GO:0009651: response to salt stress3.90E-03
100GO:0009624: response to nematode4.03E-03
101GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.06E-03
102GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response4.06E-03
103GO:1901657: glycosyl compound metabolic process4.23E-03
104GO:0009742: brassinosteroid mediated signaling pathway4.34E-03
105GO:0080167: response to karrikin4.37E-03
106GO:0006904: vesicle docking involved in exocytosis4.79E-03
107GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.80E-03
108GO:0006401: RNA catabolic process4.80E-03
109GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway4.80E-03
110GO:0046777: protein autophosphorylation4.83E-03
111GO:0048658: anther wall tapetum development5.57E-03
112GO:0006402: mRNA catabolic process5.57E-03
113GO:0009787: regulation of abscisic acid-activated signaling pathway5.57E-03
114GO:1900150: regulation of defense response to fungus5.57E-03
115GO:0009414: response to water deprivation5.67E-03
116GO:0009845: seed germination5.93E-03
117GO:0006979: response to oxidative stress6.03E-03
118GO:0010208: pollen wall assembly6.39E-03
119GO:0009699: phenylpropanoid biosynthetic process6.39E-03
120GO:0009932: cell tip growth6.39E-03
121GO:0048193: Golgi vesicle transport6.39E-03
122GO:0008219: cell death7.02E-03
123GO:0009060: aerobic respiration7.24E-03
124GO:0098656: anion transmembrane transport7.24E-03
125GO:0046685: response to arsenic-containing substance7.24E-03
126GO:0006783: heme biosynthetic process7.24E-03
127GO:0010311: lateral root formation7.37E-03
128GO:0009408: response to heat7.90E-03
129GO:0006779: porphyrin-containing compound biosynthetic process8.14E-03
130GO:0008202: steroid metabolic process8.14E-03
131GO:0006457: protein folding8.42E-03
132GO:0009753: response to jasmonic acid8.78E-03
133GO:0016051: carbohydrate biosynthetic process8.90E-03
134GO:0048829: root cap development9.07E-03
135GO:0007064: mitotic sister chromatid cohesion9.07E-03
136GO:0006782: protoporphyrinogen IX biosynthetic process9.07E-03
137GO:0051026: chiasma assembly9.07E-03
138GO:0007166: cell surface receptor signaling pathway9.60E-03
139GO:0010015: root morphogenesis1.00E-02
140GO:0009617: response to bacterium1.01E-02
141GO:0006839: mitochondrial transport1.02E-02
142GO:0006887: exocytosis1.06E-02
143GO:0071365: cellular response to auxin stimulus1.11E-02
144GO:0010105: negative regulation of ethylene-activated signaling pathway1.11E-02
145GO:0009873: ethylene-activated signaling pathway1.16E-02
146GO:0055046: microgametogenesis1.21E-02
147GO:0006108: malate metabolic process1.21E-02
148GO:0034605: cellular response to heat1.32E-02
149GO:0002237: response to molecule of bacterial origin1.32E-02
150GO:0009969: xyloglucan biosynthetic process1.43E-02
151GO:0009225: nucleotide-sugar metabolic process1.43E-02
152GO:0010167: response to nitrate1.43E-02
153GO:0071732: cellular response to nitric oxide1.43E-02
154GO:0090351: seedling development1.43E-02
155GO:0010224: response to UV-B1.61E-02
156GO:2000377: regulation of reactive oxygen species metabolic process1.66E-02
157GO:0043622: cortical microtubule organization1.78E-02
158GO:0009738: abscisic acid-activated signaling pathway1.79E-02
159GO:0016998: cell wall macromolecule catabolic process1.91E-02
160GO:0051260: protein homooligomerization1.91E-02
161GO:0061077: chaperone-mediated protein folding1.91E-02
162GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.93E-02
163GO:0031348: negative regulation of defense response2.03E-02
164GO:0030245: cellulose catabolic process2.03E-02
165GO:0007131: reciprocal meiotic recombination2.03E-02
166GO:0035556: intracellular signal transduction2.03E-02
167GO:0030433: ubiquitin-dependent ERAD pathway2.03E-02
168GO:0071215: cellular response to abscisic acid stimulus2.16E-02
169GO:0071369: cellular response to ethylene stimulus2.16E-02
170GO:0006817: phosphate ion transport2.29E-02
171GO:0019722: calcium-mediated signaling2.29E-02
172GO:0009306: protein secretion2.29E-02
173GO:0010118: stomatal movement2.57E-02
174GO:0042631: cellular response to water deprivation2.57E-02
175GO:0000271: polysaccharide biosynthetic process2.57E-02
176GO:0009960: endosperm development2.71E-02
177GO:0045489: pectin biosynthetic process2.71E-02
178GO:0009749: response to glucose3.00E-02
179GO:0019252: starch biosynthetic process3.00E-02
180GO:0031047: gene silencing by RNA3.30E-02
181GO:0016310: phosphorylation3.30E-02
182GO:0071281: cellular response to iron ion3.45E-02
183GO:0010090: trichome morphogenesis3.45E-02
184GO:0006810: transport3.48E-02
185GO:0006310: DNA recombination3.61E-02
186GO:0009639: response to red or far red light3.61E-02
187GO:0010286: heat acclimation3.77E-02
188GO:0007623: circadian rhythm3.83E-02
189GO:0009615: response to virus4.09E-02
190GO:0001666: response to hypoxia4.09E-02
191GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.25E-02
192GO:0009816: defense response to bacterium, incompatible interaction4.25E-02
193GO:0006357: regulation of transcription from RNA polymerase II promoter4.27E-02
194GO:0009627: systemic acquired resistance4.42E-02
195GO:0015995: chlorophyll biosynthetic process4.59E-02
196GO:0048573: photoperiodism, flowering4.59E-02
197GO:0016049: cell growth4.76E-02
198GO:0009817: defense response to fungus, incompatible interaction4.93E-02
RankGO TermAdjusted P value
1GO:0090417: N-methylnicotinate transporter activity0.00E+00
2GO:0080123: jasmonate-amino synthetase activity0.00E+00
3GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
4GO:0090416: nicotinate transporter activity0.00E+00
5GO:0010857: calcium-dependent protein kinase activity0.00E+00
6GO:0010491: UTP:arabinose-1-phosphate uridylyltransferase activity0.00E+00
7GO:0070566: adenylyltransferase activity0.00E+00
8GO:0008987: quinolinate synthetase A activity0.00E+00
9GO:0005522: profilin binding0.00E+00
10GO:0017103: UTP:galactose-1-phosphate uridylyltransferase activity0.00E+00
11GO:0051748: UTP-monosaccharide-1-phosphate uridylyltransferase activity0.00E+00
12GO:0047338: UTP:xylose-1-phosphate uridylyltransferase activity0.00E+00
13GO:0047734: CDP-glycerol diphosphatase activity0.00E+00
14GO:2001080: chitosan binding0.00E+00
15GO:0047350: glucuronate-1-phosphate uridylyltransferase activity0.00E+00
16GO:0016301: kinase activity2.40E-07
17GO:0005524: ATP binding4.18E-06
18GO:0004674: protein serine/threonine kinase activity4.75E-06
19GO:0016165: linoleate 13S-lipoxygenase activity1.59E-05
20GO:0047631: ADP-ribose diphosphatase activity1.00E-04
21GO:0102425: myricetin 3-O-glucosyltransferase activity2.57E-04
22GO:0102360: daphnetin 3-O-glucosyltransferase activity2.57E-04
23GO:0005516: calmodulin binding2.67E-04
24GO:0052894: norspermine:oxygen oxidoreductase activity3.14E-04
25GO:0090422: thiamine pyrophosphate transporter activity3.14E-04
26GO:0015085: calcium ion transmembrane transporter activity3.14E-04
27GO:0004657: proline dehydrogenase activity3.14E-04
28GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity3.14E-04
29GO:0030544: Hsp70 protein binding3.14E-04
30GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity3.14E-04
31GO:0090440: abscisic acid transporter activity3.14E-04
32GO:0047893: flavonol 3-O-glucosyltransferase activity3.24E-04
33GO:0004672: protein kinase activity4.60E-04
34GO:0004103: choline kinase activity6.87E-04
35GO:0008883: glutamyl-tRNA reductase activity6.87E-04
36GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity6.87E-04
37GO:0005388: calcium-transporting ATPase activity9.84E-04
38GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.11E-03
39GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity1.11E-03
40GO:0046592: polyamine oxidase activity1.11E-03
41GO:0003840: gamma-glutamyltransferase activity1.11E-03
42GO:0036374: glutathione hydrolase activity1.11E-03
43GO:0046423: allene-oxide cyclase activity1.11E-03
44GO:0004383: guanylate cyclase activity1.11E-03
45GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.14E-03
46GO:0004351: glutamate decarboxylase activity1.60E-03
47GO:0019201: nucleotide kinase activity1.60E-03
48GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity1.60E-03
49GO:0001653: peptide receptor activity1.60E-03
50GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.60E-03
51GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.60E-03
52GO:0004715: non-membrane spanning protein tyrosine kinase activity1.60E-03
53GO:0019706: protein-cysteine S-palmitoyltransferase activity1.84E-03
54GO:0035251: UDP-glucosyltransferase activity1.84E-03
55GO:0043565: sequence-specific DNA binding1.89E-03
56GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity2.14E-03
57GO:0043015: gamma-tubulin binding2.14E-03
58GO:0004470: malic enzyme activity2.14E-03
59GO:0019199: transmembrane receptor protein kinase activity2.14E-03
60GO:0005253: anion channel activity2.14E-03
61GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor2.14E-03
62GO:0002020: protease binding2.74E-03
63GO:0004356: glutamate-ammonia ligase activity2.74E-03
64GO:0008948: oxaloacetate decarboxylase activity2.74E-03
65GO:0018685: alkane 1-monooxygenase activity2.74E-03
66GO:0008519: ammonium transmembrane transporter activity3.38E-03
67GO:0048040: UDP-glucuronate decarboxylase activity3.38E-03
68GO:0000210: NAD+ diphosphatase activity3.38E-03
69GO:0016462: pyrophosphatase activity3.38E-03
70GO:0035673: oligopeptide transmembrane transporter activity3.38E-03
71GO:0003779: actin binding3.88E-03
72GO:0051082: unfolded protein binding4.03E-03
73GO:0019900: kinase binding4.06E-03
74GO:0070403: NAD+ binding4.06E-03
75GO:0004017: adenylate kinase activity4.06E-03
76GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides4.06E-03
77GO:0004747: ribokinase activity4.06E-03
78GO:0004143: diacylglycerol kinase activity4.80E-03
79GO:0004427: inorganic diphosphatase activity4.80E-03
80GO:0016621: cinnamoyl-CoA reductase activity4.80E-03
81GO:0015140: malate transmembrane transporter activity4.80E-03
82GO:0019899: enzyme binding4.80E-03
83GO:0008143: poly(A) binding4.80E-03
84GO:0016758: transferase activity, transferring hexosyl groups5.18E-03
85GO:0004714: transmembrane receptor protein tyrosine kinase activity5.57E-03
86GO:0008865: fructokinase activity5.57E-03
87GO:0102483: scopolin beta-glucosidase activity6.33E-03
88GO:0008142: oxysterol binding6.39E-03
89GO:0003951: NAD+ kinase activity6.39E-03
90GO:0004675: transmembrane receptor protein serine/threonine kinase activity7.40E-03
91GO:0030246: carbohydrate binding9.01E-03
92GO:0008047: enzyme activator activity9.07E-03
93GO:0004713: protein tyrosine kinase activity9.07E-03
94GO:0008422: beta-glucosidase activity9.73E-03
95GO:0015198: oligopeptide transporter activity1.11E-02
96GO:0019888: protein phosphatase regulator activity1.21E-02
97GO:0000175: 3'-5'-exoribonuclease activity1.21E-02
98GO:0005315: inorganic phosphate transmembrane transporter activity1.21E-02
99GO:0008131: primary amine oxidase activity1.32E-02
100GO:0008061: chitin binding1.43E-02
101GO:0004725: protein tyrosine phosphatase activity1.54E-02
102GO:0050660: flavin adenine dinucleotide binding1.70E-02
103GO:0031625: ubiquitin protein ligase binding1.72E-02
104GO:0051087: chaperone binding1.78E-02
105GO:0044212: transcription regulatory region DNA binding1.82E-02
106GO:0004540: ribonuclease activity1.91E-02
107GO:0033612: receptor serine/threonine kinase binding1.91E-02
108GO:0080043: quercetin 3-O-glucosyltransferase activity2.02E-02
109GO:0080044: quercetin 7-O-glucosyltransferase activity2.02E-02
110GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.03E-02
111GO:0022891: substrate-specific transmembrane transporter activity2.16E-02
112GO:0008514: organic anion transmembrane transporter activity2.29E-02
113GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.33E-02
114GO:0046872: metal ion binding2.38E-02
115GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.66E-02
116GO:0050662: coenzyme binding2.85E-02
117GO:0019901: protein kinase binding3.00E-02
118GO:0004518: nuclease activity3.30E-02
119GO:0009055: electron carrier activity3.30E-02
120GO:0015144: carbohydrate transmembrane transporter activity3.32E-02
121GO:0051015: actin filament binding3.45E-02
122GO:0003729: mRNA binding3.55E-02
123GO:0016791: phosphatase activity3.61E-02
124GO:0015297: antiporter activity3.66E-02
125GO:0005351: sugar:proton symporter activity3.74E-02
126GO:0008194: UDP-glycosyltransferase activity4.28E-02
127GO:0009931: calcium-dependent protein serine/threonine kinase activity4.42E-02
128GO:0004683: calmodulin-dependent protein kinase activity4.59E-02
129GO:0004721: phosphoprotein phosphatase activity4.59E-02
130GO:0030247: polysaccharide binding4.59E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.69E-09
2GO:0016442: RISC complex3.14E-04
3GO:0005911: cell-cell junction3.14E-04
4GO:0016021: integral component of membrane4.41E-04
5GO:0010494: cytoplasmic stress granule4.78E-04
6GO:0070062: extracellular exosome1.60E-03
7GO:0000178: exosome (RNase complex)2.74E-03
8GO:0000145: exocyst3.97E-03
9GO:0030173: integral component of Golgi membrane4.06E-03
10GO:0016363: nuclear matrix4.06E-03
11GO:0005829: cytosol4.15E-03
12GO:0032580: Golgi cisterna membrane4.50E-03
13GO:0000932: P-body5.37E-03
14GO:0043231: intracellular membrane-bounded organelle9.16E-03
15GO:0000159: protein phosphatase type 2A complex1.00E-02
16GO:0071013: catalytic step 2 spliceosome1.00E-02
17GO:0048471: perinuclear region of cytoplasm1.00E-02
18GO:0090406: pollen tube1.15E-02
19GO:0005768: endosome1.52E-02
20GO:0043234: protein complex1.54E-02
21GO:0005758: mitochondrial intermembrane space1.66E-02
22GO:0010008: endosome membrane1.90E-02
23GO:0000790: nuclear chromatin2.43E-02
24GO:0030136: clathrin-coated vesicle2.43E-02
25GO:0005770: late endosome2.71E-02
26GO:0009506: plasmodesma2.75E-02
27GO:0005743: mitochondrial inner membrane2.76E-02
28GO:0005778: peroxisomal membrane3.77E-02
29GO:0005788: endoplasmic reticulum lumen4.25E-02
30GO:0005887: integral component of plasma membrane4.40E-02
31GO:0016020: membrane4.73E-02
32GO:0019005: SCF ubiquitin ligase complex4.93E-02
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Gene type



Gene DE type