co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
6	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
7	GO:0042493: response to drug	0.00E+00
8	GO:0006399: tRNA metabolic process	0.00E+00
9	GO:0061157: mRNA destabilization	0.00E+00
10	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
11	GO:0009715: chalcone biosynthetic process	0.00E+00
12	GO:0015979: photosynthesis	6.66E-09
13	GO:0010027: thylakoid membrane organization	5.57E-06
14	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.76E-06
15	GO:0090391: granum assembly	2.02E-05
16	GO:0009765: photosynthesis, light harvesting	7.90E-05
17	GO:0018298: protein-chromophore linkage	1.50E-04
18	GO:0009658: chloroplast organization	1.94E-04
19	GO:0009772: photosynthetic electron transport in photosystem II	3.12E-04
20	GO:0043953: protein transport by the Tat complex	3.57E-04
21	GO:0010480: microsporocyte differentiation	3.57E-04
22	GO:0000481: maturation of 5S rRNA	3.57E-04
23	GO:0042371: vitamin K biosynthetic process	3.57E-04
24	GO:0065002: intracellular protein transmembrane transport	3.57E-04
25	GO:0043686: co-translational protein modification	3.57E-04
26	GO:0043007: maintenance of rDNA	3.57E-04
27	GO:0034337: RNA folding	3.57E-04
28	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.57E-04
29	GO:0006419: alanyl-tRNA aminoacylation	3.57E-04
30	GO:0000476: maturation of 4.5S rRNA	3.57E-04
31	GO:0000967: rRNA 5'-end processing	3.57E-04
32	GO:0048564: photosystem I assembly	3.92E-04
33	GO:0009629: response to gravity	7.77E-04
34	GO:0018026: peptidyl-lysine monomethylation	7.77E-04
35	GO:0080181: lateral root branching	7.77E-04
36	GO:0034470: ncRNA processing	7.77E-04
37	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.77E-04
38	GO:0009773: photosynthetic electron transport in photosystem I	9.13E-04
39	GO:0006954: inflammatory response	1.26E-03
40	GO:0005977: glycogen metabolic process	1.26E-03
41	GO:0080167: response to karrikin	1.38E-03
42	GO:0019853: L-ascorbic acid biosynthetic process	1.49E-03
43	GO:0009637: response to blue light	1.62E-03
44	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.81E-03
45	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.81E-03
46	GO:2001141: regulation of RNA biosynthetic process	1.81E-03
47	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.81E-03
48	GO:0007231: osmosensory signaling pathway	1.81E-03
49	GO:0009102: biotin biosynthetic process	1.81E-03
50	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.81E-03
51	GO:0009650: UV protection	1.81E-03
52	GO:0009768: photosynthesis, light harvesting in photosystem I	2.03E-03
53	GO:0010114: response to red light	2.24E-03
54	GO:0033500: carbohydrate homeostasis	2.44E-03
55	GO:0006021: inositol biosynthetic process	2.44E-03
56	GO:0010021: amylopectin biosynthetic process	2.44E-03
57	GO:0022622: root system development	2.44E-03
58	GO:0015846: polyamine transport	2.44E-03
59	GO:0006221: pyrimidine nucleotide biosynthetic process	2.44E-03
60	GO:0016558: protein import into peroxisome matrix	3.11E-03
61	GO:0006564: L-serine biosynthetic process	3.11E-03
62	GO:0010236: plastoquinone biosynthetic process	3.11E-03
63	GO:0031365: N-terminal protein amino acid modification	3.11E-03
64	GO:0042793: transcription from plastid promoter	3.85E-03
65	GO:0010190: cytochrome b6f complex assembly	3.85E-03
66	GO:0046855: inositol phosphate dephosphorylation	3.85E-03
67	GO:0009643: photosynthetic acclimation	3.85E-03
68	GO:0042549: photosystem II stabilization	3.85E-03
69	GO:0042372: phylloquinone biosynthetic process	4.64E-03
70	GO:1901259: chloroplast rRNA processing	4.64E-03
71	GO:0048280: vesicle fusion with Golgi apparatus	4.64E-03
72	GO:0010189: vitamin E biosynthetic process	4.64E-03
73	GO:0010583: response to cyclopentenone	4.81E-03
74	GO:0010196: nonphotochemical quenching	5.48E-03
75	GO:0009769: photosynthesis, light harvesting in photosystem II	5.48E-03
76	GO:0009645: response to low light intensity stimulus	5.48E-03
77	GO:0006400: tRNA modification	5.48E-03
78	GO:0032880: regulation of protein localization	5.48E-03
79	GO:0048437: floral organ development	5.48E-03
80	GO:0030091: protein repair	6.37E-03
81	GO:0006605: protein targeting	6.37E-03
82	GO:0032508: DNA duplex unwinding	6.37E-03
83	GO:0010492: maintenance of shoot apical meristem identity	6.37E-03
84	GO:0031540: regulation of anthocyanin biosynthetic process	6.37E-03
85	GO:0000105: histidine biosynthetic process	6.37E-03
86	GO:0009231: riboflavin biosynthetic process	6.37E-03
87	GO:0016559: peroxisome fission	6.37E-03
88	GO:0005975: carbohydrate metabolic process	7.02E-03
89	GO:0032544: plastid translation	7.30E-03
90	GO:0017004: cytochrome complex assembly	7.30E-03
91	GO:0071482: cellular response to light stimulus	7.30E-03
92	GO:0015995: chlorophyll biosynthetic process	7.67E-03
93	GO:0016311: dephosphorylation	8.09E-03
94	GO:0048507: meristem development	8.29E-03
95	GO:0000373: Group II intron splicing	8.29E-03
96	GO:0009813: flavonoid biosynthetic process	8.94E-03
97	GO:0010205: photoinhibition	9.31E-03
98	GO:0010218: response to far red light	9.39E-03
99	GO:0032259: methylation	9.91E-03
100	GO:0006949: syncytium formation	1.04E-02
101	GO:0006896: Golgi to vacuole transport	1.04E-02
102	GO:0009451: RNA modification	1.06E-02
103	GO:0009089: lysine biosynthetic process via diaminopimelate	1.15E-02
104	GO:0072593: reactive oxygen species metabolic process	1.15E-02
105	GO:1903507: negative regulation of nucleic acid-templated transcription	1.15E-02
106	GO:0006352: DNA-templated transcription, initiation	1.15E-02
107	GO:0018119: peptidyl-cysteine S-nitrosylation	1.15E-02
108	GO:0048229: gametophyte development	1.15E-02
109	GO:0006816: calcium ion transport	1.15E-02
110	GO:0019684: photosynthesis, light reaction	1.15E-02
111	GO:0005983: starch catabolic process	1.27E-02
112	GO:0006790: sulfur compound metabolic process	1.27E-02
113	GO:0010628: positive regulation of gene expression	1.39E-02
114	GO:0010075: regulation of meristem growth	1.39E-02
115	GO:0009767: photosynthetic electron transport chain	1.39E-02
116	GO:2000012: regulation of auxin polar transport	1.39E-02
117	GO:0010207: photosystem II assembly	1.51E-02
118	GO:0010020: chloroplast fission	1.51E-02
119	GO:0009934: regulation of meristem structural organization	1.51E-02
120	GO:0010030: positive regulation of seed germination	1.64E-02
121	GO:0070588: calcium ion transmembrane transport	1.64E-02
122	GO:0046854: phosphatidylinositol phosphorylation	1.64E-02
123	GO:0009793: embryo development ending in seed dormancy	1.72E-02
124	GO:0009664: plant-type cell wall organization	1.76E-02
125	GO:0006863: purine nucleobase transport	1.77E-02
126	GO:0006833: water transport	1.77E-02
127	GO:0000162: tryptophan biosynthetic process	1.77E-02
128	GO:0006364: rRNA processing	1.89E-02
129	GO:0010224: response to UV-B	1.95E-02
130	GO:0019953: sexual reproduction	2.04E-02
131	GO:0048511: rhythmic process	2.18E-02
132	GO:0019915: lipid storage	2.18E-02
133	GO:0009269: response to desiccation	2.18E-02
134	GO:0048278: vesicle docking	2.18E-02
135	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.33E-02
136	GO:0080092: regulation of pollen tube growth	2.33E-02
137	GO:0009411: response to UV	2.48E-02
138	GO:0071369: cellular response to ethylene stimulus	2.48E-02
139	GO:0006012: galactose metabolic process	2.48E-02
140	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.48E-02
141	GO:0009416: response to light stimulus	2.50E-02
142	GO:0006284: base-excision repair	2.63E-02
143	GO:0009306: protein secretion	2.63E-02
144	GO:0008284: positive regulation of cell proliferation	2.79E-02
145	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.79E-02
146	GO:0042147: retrograde transport, endosome to Golgi	2.79E-02
147	GO:0034220: ion transmembrane transport	2.95E-02
148	GO:0000413: protein peptidyl-prolyl isomerization	2.95E-02
149	GO:0048653: anther development	2.95E-02
150	GO:0042631: cellular response to water deprivation	2.95E-02
151	GO:0006520: cellular amino acid metabolic process	3.11E-02
152	GO:0048868: pollen tube development	3.11E-02
153	GO:0009958: positive gravitropism	3.11E-02
154	GO:0015986: ATP synthesis coupled proton transport	3.27E-02
155	GO:0007018: microtubule-based movement	3.27E-02
156	GO:0061025: membrane fusion	3.27E-02
157	GO:0006814: sodium ion transport	3.27E-02
158	GO:0042752: regulation of circadian rhythm	3.27E-02
159	GO:0019252: starch biosynthetic process	3.44E-02
160	GO:0008654: phospholipid biosynthetic process	3.44E-02
161	GO:0055072: iron ion homeostasis	3.44E-02
162	GO:0006623: protein targeting to vacuole	3.44E-02
163	GO:0002229: defense response to oomycetes	3.61E-02
164	GO:0010193: response to ozone	3.61E-02
165	GO:0006891: intra-Golgi vesicle-mediated transport	3.61E-02
166	GO:0006635: fatty acid beta-oxidation	3.61E-02
167	GO:0016042: lipid catabolic process	3.70E-02
168	GO:0016032: viral process	3.78E-02
169	GO:0032502: developmental process	3.78E-02
170	GO:0006281: DNA repair	3.83E-02
171	GO:0009790: embryo development	3.92E-02
172	GO:0009828: plant-type cell wall loosening	4.14E-02
173	GO:0009567: double fertilization forming a zygote and endosperm	4.14E-02
174	GO:0006810: transport	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
2	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0019808: polyamine binding	0.00E+00
5	GO:0042623: ATPase activity, coupled	0.00E+00
6	GO:0010276: phytol kinase activity	0.00E+00
7	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
8	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
9	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
10	GO:0004076: biotin synthase activity	0.00E+00
11	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
12	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
13	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
14	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.18E-05
16	GO:0043495: protein anchor	7.90E-05
17	GO:0016168: chlorophyll binding	1.03E-04
18	GO:0019899: enzyme binding	3.12E-04
19	GO:0004813: alanine-tRNA ligase activity	3.57E-04
20	GO:0047911: galacturan 1,4-alpha-galacturonidase activity	3.57E-04
21	GO:0019203: carbohydrate phosphatase activity	3.57E-04
22	GO:0042586: peptide deformylase activity	3.57E-04
23	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.57E-04
24	GO:0050308: sugar-phosphatase activity	3.57E-04
25	GO:0008934: inositol monophosphate 1-phosphatase activity	7.77E-04
26	GO:0052833: inositol monophosphate 4-phosphatase activity	7.77E-04
27	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	7.77E-04
28	GO:0030385: ferredoxin:thioredoxin reductase activity	7.77E-04
29	GO:0019156: isoamylase activity	7.77E-04
30	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.77E-04
31	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.77E-04
32	GO:0004617: phosphoglycerate dehydrogenase activity	7.77E-04
33	GO:0052832: inositol monophosphate 3-phosphatase activity	7.77E-04
34	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	7.77E-04
35	GO:0005504: fatty acid binding	1.26E-03
36	GO:0004751: ribose-5-phosphate isomerase activity	1.26E-03
37	GO:0019843: rRNA binding	1.32E-03
38	GO:0031409: pigment binding	1.66E-03
39	GO:0009041: uridylate kinase activity	1.81E-03
40	GO:0016851: magnesium chelatase activity	1.81E-03
41	GO:0008508: bile acid:sodium symporter activity	1.81E-03
42	GO:0005528: FK506 binding	1.83E-03
43	GO:0045430: chalcone isomerase activity	2.44E-03
44	GO:0004659: prenyltransferase activity	2.44E-03
45	GO:0016279: protein-lysine N-methyltransferase activity	2.44E-03
46	GO:0001053: plastid sigma factor activity	2.44E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.44E-03
48	GO:0004045: aminoacyl-tRNA hydrolase activity	2.44E-03
49	GO:0080032: methyl jasmonate esterase activity	2.44E-03
50	GO:0016987: sigma factor activity	2.44E-03
51	GO:0051537: 2 iron, 2 sulfur cluster binding	2.48E-03
52	GO:0022891: substrate-specific transmembrane transporter activity	2.66E-03
53	GO:0008725: DNA-3-methyladenine glycosylase activity	3.11E-03
54	GO:0004556: alpha-amylase activity	3.85E-03
55	GO:0004462: lactoylglutathione lyase activity	3.85E-03
56	GO:0042578: phosphoric ester hydrolase activity	3.85E-03
57	GO:2001070: starch binding	3.85E-03
58	GO:0004605: phosphatidate cytidylyltransferase activity	3.85E-03
59	GO:0080030: methyl indole-3-acetate esterase activity	3.85E-03
60	GO:0016788: hydrolase activity, acting on ester bonds	4.34E-03
61	GO:0008195: phosphatidate phosphatase activity	4.64E-03
62	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.64E-03
63	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.64E-03
64	GO:0016597: amino acid binding	6.15E-03
65	GO:0004033: aldo-keto reductase (NADP) activity	6.37E-03
66	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.29E-03
67	GO:0008017: microtubule binding	1.10E-02
68	GO:0003993: acid phosphatase activity	1.13E-02
69	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.15E-02
70	GO:0000149: SNARE binding	1.18E-02
71	GO:0000049: tRNA binding	1.27E-02
72	GO:0008081: phosphoric diester hydrolase activity	1.39E-02
73	GO:0005262: calcium channel activity	1.39E-02
74	GO:0005484: SNAP receptor activity	1.40E-02
75	GO:0042802: identical protein binding	1.40E-02
76	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.51E-02
77	GO:0008083: growth factor activity	1.51E-02
78	GO:0008168: methyltransferase activity	1.72E-02
79	GO:0003714: transcription corepressor activity	1.90E-02
80	GO:0043424: protein histidine kinase binding	2.04E-02
81	GO:0005345: purine nucleobase transmembrane transporter activity	2.04E-02
82	GO:0033612: receptor serine/threonine kinase binding	2.18E-02
83	GO:0003723: RNA binding	2.38E-02
84	GO:0004650: polygalacturonase activity	2.46E-02
85	GO:0003727: single-stranded RNA binding	2.63E-02
86	GO:0052689: carboxylic ester hydrolase activity	2.68E-02
87	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.11E-02
88	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.61E-02
89	GO:0048038: quinone binding	3.61E-02
90	GO:0016491: oxidoreductase activity	3.99E-02
91	GO:0009055: electron carrier activity	4.18E-02
92	GO:0004519: endonuclease activity	4.25E-02
93	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.32E-02
94	GO:0015250: water channel activity	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009349: riboflavin synthase complex	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0009507: chloroplast	2.56E-44
6	GO:0009535: chloroplast thylakoid membrane	4.90E-25
7	GO:0009579: thylakoid	8.75E-12
8	GO:0009570: chloroplast stroma	4.05E-11
9	GO:0009543: chloroplast thylakoid lumen	8.21E-09
10	GO:0009941: chloroplast envelope	1.74E-08
11	GO:0009534: chloroplast thylakoid	1.18E-06
12	GO:0031977: thylakoid lumen	1.83E-06
13	GO:0009538: photosystem I reaction center	1.22E-05
14	GO:0009523: photosystem II	4.02E-05
15	GO:0030095: chloroplast photosystem II	9.75E-05
16	GO:0010287: plastoglobule	2.14E-04
17	GO:0009533: chloroplast stromal thylakoid	3.12E-04
18	GO:0009515: granal stacked thylakoid	3.57E-04
19	GO:0031361: integral component of thylakoid membrane	3.57E-04
20	GO:0042644: chloroplast nucleoid	5.76E-04
21	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.77E-04
22	GO:0009508: plastid chromosome	1.18E-03
23	GO:0033281: TAT protein transport complex	1.26E-03
24	GO:0010007: magnesium chelatase complex	1.26E-03
25	GO:0030076: light-harvesting complex	1.49E-03
26	GO:0009531: secondary cell wall	1.81E-03
27	GO:0042646: plastid nucleoid	1.81E-03
28	GO:0042651: thylakoid membrane	2.03E-03
29	GO:0009654: photosystem II oxygen evolving complex	2.03E-03
30	GO:0009517: PSII associated light-harvesting complex II	2.44E-03
31	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.85E-03
32	GO:0009522: photosystem I	3.92E-03
33	GO:0019898: extrinsic component of membrane	4.20E-03
34	GO:0009295: nucleoid	5.80E-03
35	GO:0012507: ER to Golgi transport vesicle membrane	6.37E-03
36	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.29E-03
37	GO:0055028: cortical microtubule	1.04E-02
38	GO:0016324: apical plasma membrane	1.04E-02
39	GO:0012511: monolayer-surrounded lipid storage body	1.15E-02
40	GO:0032040: small-subunit processome	1.27E-02
41	GO:0031201: SNARE complex	1.29E-02
42	GO:0016020: membrane	1.98E-02
43	GO:0031969: chloroplast membrane	2.36E-02
44	GO:0005840: ribosome	2.74E-02
45	GO:0005871: kinesin complex	2.79E-02
46	GO:0009504: cell plate	3.44E-02
47	GO:0009536: plastid	3.55E-02
48	GO:0005778: peroxisomal membrane	4.32E-02
49	GO:0010319: stromule	4.32E-02
50	GO:0030529: intracellular ribonucleoprotein complex	4.69E-02