Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G06700

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
2GO:0044843: cell cycle G1/S phase transition0.00E+00
3GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
4GO:0009264: deoxyribonucleotide catabolic process0.00E+00
5GO:0034050: host programmed cell death induced by symbiont0.00E+00
6GO:0046487: glyoxylate metabolic process0.00E+00
7GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
8GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation0.00E+00
9GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
10GO:0006412: translation3.23E-154
11GO:0042254: ribosome biogenesis3.54E-54
12GO:0000027: ribosomal large subunit assembly1.38E-13
13GO:0006626: protein targeting to mitochondrion9.11E-11
14GO:0009735: response to cytokinin2.40E-07
15GO:0000028: ribosomal small subunit assembly8.43E-07
16GO:0009967: positive regulation of signal transduction1.52E-05
17GO:0009955: adaxial/abaxial pattern specification1.84E-05
18GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c2.87E-05
19GO:1902626: assembly of large subunit precursor of preribosome5.05E-05
20GO:0002181: cytoplasmic translation5.05E-05
21GO:0000398: mRNA splicing, via spliceosome1.60E-04
22GO:0042274: ribosomal small subunit biogenesis1.83E-04
23GO:0006820: anion transport2.00E-04
24GO:0006414: translational elongation3.09E-04
25GO:0009651: response to salt stress3.17E-04
26GO:0046686: response to cadmium ion3.70E-04
27GO:0043248: proteasome assembly3.89E-04
28GO:0045040: protein import into mitochondrial outer membrane3.89E-04
29GO:0030150: protein import into mitochondrial matrix4.43E-04
30GO:0006458: 'de novo' protein folding5.17E-04
31GO:0061077: chaperone-mediated protein folding5.70E-04
32GO:0030490: maturation of SSU-rRNA5.92E-04
33GO:0006434: seryl-tRNA aminoacylation5.92E-04
34GO:0000494: box C/D snoRNA 3'-end processing5.92E-04
35GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.92E-04
36GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.92E-04
37GO:1901349: glucosinolate transport5.92E-04
38GO:0032365: intracellular lipid transport5.92E-04
39GO:0006407: rRNA export from nucleus5.92E-04
40GO:0090449: phloem glucosinolate loading5.92E-04
41GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process5.92E-04
42GO:1990258: histone glutamine methylation5.92E-04
43GO:0015801: aromatic amino acid transport5.92E-04
44GO:0098656: anion transmembrane transport1.19E-03
45GO:0031204: posttranslational protein targeting to membrane, translocation1.27E-03
46GO:0045901: positive regulation of translational elongation1.27E-03
47GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.27E-03
48GO:0045041: protein import into mitochondrial intermembrane space1.27E-03
49GO:0048569: post-embryonic animal organ development1.27E-03
50GO:0006452: translational frameshifting1.27E-03
51GO:0051788: response to misfolded protein1.27E-03
52GO:0015786: UDP-glucose transport1.27E-03
53GO:0045905: positive regulation of translational termination1.27E-03
54GO:0000387: spliceosomal snRNP assembly1.41E-03
55GO:0006413: translational initiation1.49E-03
56GO:0006364: rRNA processing1.75E-03
57GO:0045793: positive regulation of cell size2.10E-03
58GO:0015783: GDP-fucose transport2.10E-03
59GO:0034227: tRNA thio-modification2.10E-03
60GO:0010476: gibberellin mediated signaling pathway2.10E-03
61GO:0042256: mature ribosome assembly2.10E-03
62GO:0046168: glycerol-3-phosphate catabolic process2.10E-03
63GO:0009150: purine ribonucleotide metabolic process2.10E-03
64GO:0048467: gynoecium development2.81E-03
65GO:0046513: ceramide biosynthetic process3.04E-03
66GO:0032877: positive regulation of DNA endoreduplication3.04E-03
67GO:0046836: glycolipid transport3.04E-03
68GO:0006166: purine ribonucleoside salvage3.04E-03
69GO:0070301: cellular response to hydrogen peroxide3.04E-03
70GO:0006241: CTP biosynthetic process3.04E-03
71GO:0072334: UDP-galactose transmembrane transport3.04E-03
72GO:0006072: glycerol-3-phosphate metabolic process3.04E-03
73GO:0009647: skotomorphogenesis3.04E-03
74GO:0006165: nucleoside diphosphate phosphorylation3.04E-03
75GO:0006228: UTP biosynthetic process3.04E-03
76GO:0006164: purine nucleotide biosynthetic process3.04E-03
77GO:0006168: adenine salvage3.04E-03
78GO:0051781: positive regulation of cell division4.10E-03
79GO:0006183: GTP biosynthetic process4.10E-03
80GO:0010363: regulation of plant-type hypersensitive response4.10E-03
81GO:0007005: mitochondrion organization5.20E-03
82GO:0007029: endoplasmic reticulum organization5.27E-03
83GO:1902183: regulation of shoot apical meristem development5.27E-03
84GO:0044209: AMP salvage5.27E-03
85GO:0071493: cellular response to UV-B5.27E-03
86GO:0031167: rRNA methylation5.27E-03
87GO:0040007: growth5.68E-03
88GO:0071215: cellular response to abscisic acid stimulus5.68E-03
89GO:0008283: cell proliferation5.93E-03
90GO:0016070: RNA metabolic process6.54E-03
91GO:0000470: maturation of LSU-rRNA6.54E-03
92GO:0009965: leaf morphogenesis6.89E-03
93GO:0000413: protein peptidyl-prolyl isomerization7.25E-03
94GO:0009793: embryo development ending in seed dormancy7.53E-03
95GO:0000245: spliceosomal complex assembly7.90E-03
96GO:0009554: megasporogenesis7.90E-03
97GO:0009648: photoperiodism7.90E-03
98GO:1901001: negative regulation of response to salt stress7.90E-03
99GO:0000911: cytokinesis by cell plate formation7.90E-03
100GO:0042026: protein refolding7.90E-03
101GO:0009749: response to glucose9.04E-03
102GO:0051603: proteolysis involved in cellular protein catabolic process9.09E-03
103GO:0032880: regulation of protein localization9.35E-03
104GO:0048528: post-embryonic root development9.35E-03
105GO:1900056: negative regulation of leaf senescence9.35E-03
106GO:0031540: regulation of anthocyanin biosynthetic process1.09E-02
107GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.09E-02
108GO:0009690: cytokinin metabolic process1.09E-02
109GO:0006605: protein targeting1.09E-02
110GO:0009409: response to cold1.15E-02
111GO:0001558: regulation of cell growth1.25E-02
112GO:0001510: RNA methylation1.25E-02
113GO:0006189: 'de novo' IMP biosynthetic process1.43E-02
114GO:0009060: aerobic respiration1.43E-02
115GO:0015780: nucleotide-sugar transport1.43E-02
116GO:0009245: lipid A biosynthetic process1.43E-02
117GO:0042761: very long-chain fatty acid biosynthetic process1.60E-02
118GO:0006511: ubiquitin-dependent protein catabolic process1.77E-02
119GO:0010015: root morphogenesis1.99E-02
120GO:0006913: nucleocytoplasmic transport1.99E-02
121GO:0015770: sucrose transport1.99E-02
122GO:0009845: seed germination2.01E-02
123GO:0010043: response to zinc ion2.13E-02
124GO:0071365: cellular response to auxin stimulus2.19E-02
125GO:0008361: regulation of cell size2.19E-02
126GO:0006790: sulfur compound metabolic process2.19E-02
127GO:0012501: programmed cell death2.19E-02
128GO:0010102: lateral root morphogenesis2.40E-02
129GO:0015031: protein transport2.46E-02
130GO:0002237: response to molecule of bacterial origin2.61E-02
131GO:0006446: regulation of translational initiation2.61E-02
132GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.14E-02
133GO:0009644: response to high light intensity3.27E-02
134GO:0009116: nucleoside metabolic process3.30E-02
135GO:0006406: mRNA export from nucleus3.30E-02
136GO:0006289: nucleotide-excision repair3.30E-02
137GO:0009617: response to bacterium3.40E-02
138GO:0051302: regulation of cell division3.54E-02
139GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process3.65E-02
140GO:0015992: proton transport3.78E-02
141GO:0051260: protein homooligomerization3.78E-02
142GO:0048511: rhythmic process3.78E-02
143GO:0010431: seed maturation3.78E-02
144GO:0003333: amino acid transmembrane transport3.78E-02
145GO:0010584: pollen exine formation4.55E-02
146GO:0006096: glycolytic process4.79E-02
RankGO TermAdjusted P value
1GO:0008752: FMN reductase activity0.00E+00
2GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
3GO:0052873: FMN reductase (NADPH) activity0.00E+00
4GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
5GO:0003735: structural constituent of ribosome4.04E-189
6GO:0003729: mRNA binding5.06E-38
7GO:0019843: rRNA binding1.98E-16
8GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.65E-07
9GO:0015288: porin activity8.43E-07
10GO:0003746: translation elongation factor activity1.01E-05
11GO:0005078: MAP-kinase scaffold activity1.52E-05
12GO:0008308: voltage-gated anion channel activity5.87E-05
13GO:0008097: 5S rRNA binding1.07E-04
14GO:0044183: protein binding involved in protein folding1.63E-04
15GO:0003723: RNA binding3.52E-04
16GO:0004298: threonine-type endopeptidase activity5.70E-04
17GO:0090448: glucosinolate:proton symporter activity5.92E-04
18GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity5.92E-04
19GO:1990259: histone-glutamine methyltransferase activity5.92E-04
20GO:0035614: snRNA stem-loop binding5.92E-04
21GO:0000824: inositol tetrakisphosphate 3-kinase activity5.92E-04
22GO:0004828: serine-tRNA ligase activity5.92E-04
23GO:0047326: inositol tetrakisphosphate 5-kinase activity5.92E-04
24GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity5.92E-04
25GO:0005080: protein kinase C binding5.92E-04
26GO:0008121: ubiquinol-cytochrome-c reductase activity6.60E-04
27GO:0043022: ribosome binding8.23E-04
28GO:0030619: U1 snRNA binding1.27E-03
29GO:0004634: phosphopyruvate hydratase activity1.27E-03
30GO:0050291: sphingosine N-acyltransferase activity1.27E-03
31GO:0004618: phosphoglycerate kinase activity1.27E-03
32GO:0015173: aromatic amino acid transmembrane transporter activity1.27E-03
33GO:0032934: sterol binding1.27E-03
34GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.40E-03
35GO:0001055: RNA polymerase II activity1.41E-03
36GO:0001054: RNA polymerase I activity1.91E-03
37GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.10E-03
38GO:0005457: GDP-fucose transmembrane transporter activity2.10E-03
39GO:0070180: large ribosomal subunit rRNA binding2.10E-03
40GO:0015462: ATPase-coupled protein transmembrane transporter activity2.10E-03
41GO:0032947: protein complex scaffold2.10E-03
42GO:0008253: 5'-nucleotidase activity2.10E-03
43GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.10E-03
44GO:0070181: small ribosomal subunit rRNA binding2.10E-03
45GO:0008649: rRNA methyltransferase activity2.10E-03
46GO:0001056: RNA polymerase III activity2.19E-03
47GO:0015266: protein channel activity2.49E-03
48GO:0047627: adenylylsulfatase activity3.04E-03
49GO:0017089: glycolipid transporter activity3.04E-03
50GO:0003999: adenine phosphoribosyltransferase activity3.04E-03
51GO:0005460: UDP-glucose transmembrane transporter activity3.04E-03
52GO:0004550: nucleoside diphosphate kinase activity3.04E-03
53GO:0010011: auxin binding4.10E-03
54GO:0051861: glycolipid binding4.10E-03
55GO:0005086: ARF guanyl-nucleotide exchange factor activity4.10E-03
56GO:0070628: proteasome binding4.10E-03
57GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances4.10E-03
58GO:0008233: peptidase activity5.18E-03
59GO:0005459: UDP-galactose transmembrane transporter activity5.27E-03
60GO:0005275: amine transmembrane transporter activity5.27E-03
61GO:0031593: polyubiquitin binding6.54E-03
62GO:0031177: phosphopantetheine binding6.54E-03
63GO:0051920: peroxiredoxin activity7.90E-03
64GO:0000035: acyl binding7.90E-03
65GO:0004656: procollagen-proline 4-dioxygenase activity7.90E-03
66GO:0003899: DNA-directed 5'-3' RNA polymerase activity8.69E-03
67GO:0003743: translation initiation factor activity8.81E-03
68GO:0005338: nucleotide-sugar transmembrane transporter activity9.35E-03
69GO:0008235: metalloexopeptidase activity9.35E-03
70GO:0030515: snoRNA binding9.35E-03
71GO:0016209: antioxidant activity1.09E-02
72GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.09E-02
73GO:0008135: translation factor activity, RNA binding1.25E-02
74GO:0051082: unfolded protein binding1.37E-02
75GO:0008515: sucrose transmembrane transporter activity1.99E-02
76GO:0046961: proton-transporting ATPase activity, rotational mechanism1.99E-02
77GO:0008794: arsenate reductase (glutaredoxin) activity1.99E-02
78GO:0003993: acid phosphatase activity2.45E-02
79GO:0051119: sugar transmembrane transporter activity2.83E-02
80GO:0051536: iron-sulfur cluster binding3.30E-02
81GO:0031418: L-ascorbic acid binding3.30E-02
82GO:0043130: ubiquitin binding3.30E-02
83GO:0005528: FK506 binding3.30E-02
84GO:0051087: chaperone binding3.54E-02
85GO:0005216: ion channel activity3.54E-02
86GO:0036459: thiol-dependent ubiquitinyl hydrolase activity3.78E-02
87GO:0008514: organic anion transmembrane transporter activity4.55E-02
88GO:0004601: peroxidase activity4.68E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0005784: Sec61 translocon complex0.00E+00
3GO:0031205: endoplasmic reticulum Sec complex0.00E+00
4GO:0005832: chaperonin-containing T-complex0.00E+00
5GO:0005840: ribosome8.12E-129
6GO:0022626: cytosolic ribosome7.79E-124
7GO:0022625: cytosolic large ribosomal subunit2.18E-115
8GO:0022627: cytosolic small ribosomal subunit4.00E-86
9GO:0005829: cytosol7.10E-47
10GO:0005730: nucleolus2.51E-39
11GO:0005737: cytoplasm3.71E-39
12GO:0009506: plasmodesma4.40E-29
13GO:0005774: vacuolar membrane6.24E-22
14GO:0015934: large ribosomal subunit2.60E-19
15GO:0016020: membrane8.77E-15
16GO:0015935: small ribosomal subunit4.08E-13
17GO:0005773: vacuole1.73E-11
18GO:0005618: cell wall3.99E-09
19GO:0009507: chloroplast2.17E-08
20GO:0005886: plasma membrane4.13E-07
21GO:0046930: pore complex1.40E-06
22GO:0005742: mitochondrial outer membrane translocase complex1.40E-06
23GO:0005741: mitochondrial outer membrane2.16E-06
24GO:0000502: proteasome complex4.36E-06
25GO:0005732: small nucleolar ribonucleoprotein complex1.83E-05
26GO:0005758: mitochondrial intermembrane space3.27E-05
27GO:0005853: eukaryotic translation elongation factor 1 complex5.05E-05
28GO:0005665: DNA-directed RNA polymerase II, core complex2.00E-04
29GO:0019013: viral nucleocapsid2.40E-04
30GO:0005681: spliceosomal complex4.58E-04
31GO:0005839: proteasome core complex5.70E-04
32GO:0030686: 90S preribosome5.92E-04
33GO:0005688: U6 snRNP8.23E-04
34GO:0046540: U4/U6 x U5 tri-snRNP complex9.99E-04
35GO:0005736: DNA-directed RNA polymerase I complex1.19E-03
36GO:0005685: U1 snRNP1.19E-03
37GO:0000015: phosphopyruvate hydratase complex1.27E-03
38GO:0005666: DNA-directed RNA polymerase III complex1.41E-03
39GO:0071011: precatalytic spliceosome1.41E-03
40GO:0015030: Cajal body1.41E-03
41GO:0000418: DNA-directed RNA polymerase IV complex1.65E-03
42GO:0005740: mitochondrial envelope1.65E-03
43GO:0008541: proteasome regulatory particle, lid subcomplex1.91E-03
44GO:0071013: catalytic step 2 spliceosome1.91E-03
45GO:0034719: SMN-Sm protein complex2.10E-03
46GO:0005743: mitochondrial inner membrane2.75E-03
47GO:0005750: mitochondrial respiratory chain complex III2.81E-03
48GO:0033180: proton-transporting V-type ATPase, V1 domain3.04E-03
49GO:0009331: glycerol-3-phosphate dehydrogenase complex3.04E-03
50GO:1990726: Lsm1-7-Pat1 complex3.04E-03
51GO:0000419: DNA-directed RNA polymerase V complex3.52E-03
52GO:0016471: vacuolar proton-transporting V-type ATPase complex4.10E-03
53GO:0005682: U5 snRNP4.10E-03
54GO:0070469: respiratory chain4.32E-03
55GO:0005687: U4 snRNP5.27E-03
56GO:0097526: spliceosomal tri-snRNP complex5.27E-03
57GO:0005744: mitochondrial inner membrane presequence translocase complex6.18E-03
58GO:0031428: box C/D snoRNP complex6.54E-03
59GO:0016272: prefoldin complex7.90E-03
60GO:0005689: U12-type spliceosomal complex7.90E-03
61GO:0031359: integral component of chloroplast outer membrane9.35E-03
62GO:0071004: U2-type prespliceosome1.09E-02
63GO:0045273: respiratory chain complex II1.09E-02
64GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.09E-02
65GO:0005622: intracellular1.13E-02
66GO:0030529: intracellular ribonucleoprotein complex1.41E-02
67GO:0005788: endoplasmic reticulum lumen1.49E-02
68GO:0005686: U2 snRNP1.79E-02
69GO:0005783: endoplasmic reticulum1.83E-02
70GO:0005852: eukaryotic translation initiation factor 3 complex1.99E-02
71GO:0048471: perinuclear region of cytoplasm1.99E-02
72GO:0032040: small-subunit processome2.19E-02
73GO:0031307: integral component of mitochondrial outer membrane2.19E-02
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Gene type



Gene DE type