GO Enrichment Analysis of Co-expressed Genes with
AT3G06680
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 5 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 6 | GO:0006412: translation | 4.67E-159 |
| 7 | GO:0042254: ribosome biogenesis | 6.62E-55 |
| 8 | GO:0000027: ribosomal large subunit assembly | 2.12E-13 |
| 9 | GO:0006626: protein targeting to mitochondrion | 3.16E-10 |
| 10 | GO:0000028: ribosomal small subunit assembly | 1.03E-07 |
| 11 | GO:0006364: rRNA processing | 3.52E-06 |
| 12 | GO:0009955: adaxial/abaxial pattern specification | 3.80E-06 |
| 13 | GO:0002181: cytoplasmic translation | 1.64E-05 |
| 14 | GO:0042274: ribosomal small subunit biogenesis | 6.53E-05 |
| 15 | GO:0009735: response to cytokinin | 6.85E-05 |
| 16 | GO:0031167: rRNA methylation | 1.03E-04 |
| 17 | GO:0030150: protein import into mitochondrial matrix | 1.25E-04 |
| 18 | GO:0006407: rRNA export from nucleus | 3.19E-04 |
| 19 | GO:0031120: snRNA pseudouridine synthesis | 3.19E-04 |
| 20 | GO:0031118: rRNA pseudouridine synthesis | 3.19E-04 |
| 21 | GO:0030490: maturation of SSU-rRNA | 3.19E-04 |
| 22 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.19E-04 |
| 23 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.19E-04 |
| 24 | GO:0001510: RNA methylation | 4.07E-04 |
| 25 | GO:0000387: spliceosomal snRNP assembly | 5.78E-04 |
| 26 | GO:0010162: seed dormancy process | 6.75E-04 |
| 27 | GO:0048569: post-embryonic animal organ development | 6.97E-04 |
| 28 | GO:0009967: positive regulation of signal transduction | 6.97E-04 |
| 29 | GO:1902626: assembly of large subunit precursor of preribosome | 1.13E-03 |
| 30 | GO:0042256: mature ribosome assembly | 1.13E-03 |
| 31 | GO:0045039: protein import into mitochondrial inner membrane | 1.13E-03 |
| 32 | GO:0006165: nucleoside diphosphate phosphorylation | 1.62E-03 |
| 33 | GO:0006228: UTP biosynthetic process | 1.62E-03 |
| 34 | GO:0006164: purine nucleotide biosynthetic process | 1.62E-03 |
| 35 | GO:0007004: telomere maintenance via telomerase | 1.62E-03 |
| 36 | GO:0070301: cellular response to hydrogen peroxide | 1.62E-03 |
| 37 | GO:0006241: CTP biosynthetic process | 1.62E-03 |
| 38 | GO:0006183: GTP biosynthetic process | 2.18E-03 |
| 39 | GO:0040007: growth | 2.25E-03 |
| 40 | GO:0008033: tRNA processing | 2.86E-03 |
| 41 | GO:0010197: polar nucleus fusion | 3.08E-03 |
| 42 | GO:0000741: karyogamy | 3.43E-03 |
| 43 | GO:0045040: protein import into mitochondrial outer membrane | 3.43E-03 |
| 44 | GO:0000470: maturation of LSU-rRNA | 3.43E-03 |
| 45 | GO:0080156: mitochondrial mRNA modification | 3.81E-03 |
| 46 | GO:0009648: photoperiodism | 4.13E-03 |
| 47 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 4.87E-03 |
| 48 | GO:0000398: mRNA splicing, via spliceosome | 4.98E-03 |
| 49 | GO:0001522: pseudouridine synthesis | 5.66E-03 |
| 50 | GO:0001558: regulation of cell growth | 6.49E-03 |
| 51 | GO:0006189: 'de novo' IMP biosynthetic process | 7.36E-03 |
| 52 | GO:0007338: single fertilization | 7.36E-03 |
| 53 | GO:0009245: lipid A biosynthetic process | 7.36E-03 |
| 54 | GO:0030422: production of siRNA involved in RNA interference | 9.22E-03 |
| 55 | GO:0010015: root morphogenesis | 1.02E-02 |
| 56 | GO:0006913: nucleocytoplasmic transport | 1.02E-02 |
| 57 | GO:0009409: response to cold | 1.12E-02 |
| 58 | GO:0006820: anion transport | 1.12E-02 |
| 59 | GO:0008283: cell proliferation | 1.18E-02 |
| 60 | GO:0009793: embryo development ending in seed dormancy | 1.20E-02 |
| 61 | GO:0010102: lateral root morphogenesis | 1.23E-02 |
| 62 | GO:0009644: response to high light intensity | 1.28E-02 |
| 63 | GO:0009965: leaf morphogenesis | 1.33E-02 |
| 64 | GO:0006446: regulation of translational initiation | 1.34E-02 |
| 65 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 1.43E-02 |
| 66 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.69E-02 |
| 67 | GO:0051302: regulation of cell division | 1.81E-02 |
| 68 | GO:0015992: proton transport | 1.94E-02 |
| 69 | GO:0007005: mitochondrion organization | 2.07E-02 |
| 70 | GO:0016569: covalent chromatin modification | 2.14E-02 |
| 71 | GO:0071215: cellular response to abscisic acid stimulus | 2.20E-02 |
| 72 | GO:0009294: DNA mediated transformation | 2.20E-02 |
| 73 | GO:0000413: protein peptidyl-prolyl isomerization | 2.61E-02 |
| 74 | GO:0015031: protein transport | 2.84E-02 |
| 75 | GO:0000302: response to reactive oxygen species | 3.20E-02 |
| 76 | GO:0006413: translational initiation | 3.65E-02 |
| 77 | GO:0009567: double fertilization forming a zygote and endosperm | 3.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 2 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 3 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 4 | GO:0003735: structural constituent of ribosome | 3.11E-188 |
| 5 | GO:0003729: mRNA binding | 1.30E-31 |
| 6 | GO:0019843: rRNA binding | 5.27E-18 |
| 7 | GO:0003723: RNA binding | 5.04E-06 |
| 8 | GO:0030515: snoRNA binding | 6.10E-06 |
| 9 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 7.29E-06 |
| 10 | GO:0008649: rRNA methyltransferase activity | 1.64E-05 |
| 11 | GO:0008097: 5S rRNA binding | 3.65E-05 |
| 12 | GO:0048037: cofactor binding | 3.19E-04 |
| 13 | GO:0001055: RNA polymerase II activity | 5.78E-04 |
| 14 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 6.97E-04 |
| 15 | GO:0005078: MAP-kinase scaffold activity | 6.97E-04 |
| 16 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 6.97E-04 |
| 17 | GO:0070034: telomerase RNA binding | 6.97E-04 |
| 18 | GO:0001054: RNA polymerase I activity | 7.78E-04 |
| 19 | GO:0001056: RNA polymerase III activity | 8.89E-04 |
| 20 | GO:0015266: protein channel activity | 1.01E-03 |
| 21 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 1.13E-03 |
| 22 | GO:0004407: histone deacetylase activity | 1.56E-03 |
| 23 | GO:0004550: nucleoside diphosphate kinase activity | 1.62E-03 |
| 24 | GO:0031177: phosphopantetheine binding | 3.43E-03 |
| 25 | GO:0000035: acyl binding | 4.13E-03 |
| 26 | GO:0008235: metalloexopeptidase activity | 4.87E-03 |
| 27 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 4.87E-03 |
| 28 | GO:0043022: ribosome binding | 5.66E-03 |
| 29 | GO:0015288: porin activity | 5.66E-03 |
| 30 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 5.66E-03 |
| 31 | GO:0008308: voltage-gated anion channel activity | 6.49E-03 |
| 32 | GO:0044183: protein binding involved in protein folding | 1.02E-02 |
| 33 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.59E-02 |
| 34 | GO:0051087: chaperone binding | 1.81E-02 |
| 35 | GO:0005507: copper ion binding | 3.27E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 3 | GO:0043186: P granule | 0.00E+00 |
| 4 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 5 | GO:0005840: ribosome | 7.75E-123 |
| 6 | GO:0022625: cytosolic large ribosomal subunit | 1.14E-112 |
| 7 | GO:0022626: cytosolic ribosome | 1.66E-110 |
| 8 | GO:0022627: cytosolic small ribosomal subunit | 3.06E-82 |
| 9 | GO:0005730: nucleolus | 3.36E-43 |
| 10 | GO:0005737: cytoplasm | 8.05E-32 |
| 11 | GO:0005829: cytosol | 7.08E-29 |
| 12 | GO:0009506: plasmodesma | 2.75E-22 |
| 13 | GO:0015934: large ribosomal subunit | 8.82E-17 |
| 14 | GO:0015935: small ribosomal subunit | 5.39E-15 |
| 15 | GO:0005774: vacuolar membrane | 6.15E-13 |
| 16 | GO:0016020: membrane | 2.14E-12 |
| 17 | GO:0005773: vacuole | 1.14E-08 |
| 18 | GO:0005618: cell wall | 4.43E-08 |
| 19 | GO:0005742: mitochondrial outer membrane translocase complex | 1.74E-07 |
| 20 | GO:0015030: Cajal body | 4.27E-07 |
| 21 | GO:0009507: chloroplast | 7.54E-06 |
| 22 | GO:0019013: viral nucleocapsid | 6.28E-05 |
| 23 | GO:0005758: mitochondrial intermembrane space | 1.25E-04 |
| 24 | GO:0031428: box C/D snoRNP complex | 1.48E-04 |
| 25 | GO:0030686: 90S preribosome | 3.19E-04 |
| 26 | GO:0005736: DNA-directed RNA polymerase I complex | 4.90E-04 |
| 27 | GO:0005666: DNA-directed RNA polymerase III complex | 5.78E-04 |
| 28 | GO:0000418: DNA-directed RNA polymerase IV complex | 6.75E-04 |
| 29 | GO:0032040: small-subunit processome | 8.89E-04 |
| 30 | GO:0005665: DNA-directed RNA polymerase II, core complex | 8.89E-04 |
| 31 | GO:0034719: SMN-Sm protein complex | 1.13E-03 |
| 32 | GO:0005886: plasma membrane | 1.32E-03 |
| 33 | GO:0031429: box H/ACA snoRNP complex | 1.62E-03 |
| 34 | GO:0005743: mitochondrial inner membrane | 1.80E-03 |
| 35 | GO:0005682: U5 snRNP | 2.18E-03 |
| 36 | GO:0005687: U4 snRNP | 2.78E-03 |
| 37 | GO:0097526: spliceosomal tri-snRNP complex | 2.78E-03 |
| 38 | GO:0005689: U12-type spliceosomal complex | 4.13E-03 |
| 39 | GO:0016272: prefoldin complex | 4.13E-03 |
| 40 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.64E-03 |
| 41 | GO:0030529: intracellular ribonucleoprotein complex | 5.50E-03 |
| 42 | GO:0071004: U2-type prespliceosome | 5.66E-03 |
| 43 | GO:0046930: pore complex | 6.49E-03 |
| 44 | GO:0005685: U1 snRNP | 7.36E-03 |
| 45 | GO:0005759: mitochondrial matrix | 7.39E-03 |
| 46 | GO:0071011: precatalytic spliceosome | 8.27E-03 |
| 47 | GO:0005686: U2 snRNP | 9.22E-03 |
| 48 | GO:0005740: mitochondrial envelope | 9.22E-03 |
| 49 | GO:0071013: catalytic step 2 spliceosome | 1.02E-02 |
| 50 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.02E-02 |
| 51 | GO:0031307: integral component of mitochondrial outer membrane | 1.12E-02 |
| 52 | GO:0005750: mitochondrial respiratory chain complex III | 1.34E-02 |
| 53 | GO:0005622: intracellular | 1.52E-02 |
| 54 | GO:0000419: DNA-directed RNA polymerase V complex | 1.57E-02 |
| 55 | GO:0070469: respiratory chain | 1.81E-02 |
| 56 | GO:0005681: spliceosomal complex | 1.88E-02 |
| 57 | GO:0005741: mitochondrial outer membrane | 1.94E-02 |
| 58 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 2.33E-02 |
| 59 | GO:0016592: mediator complex | 3.35E-02 |