co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
2	GO:0072321: chaperone-mediated protein transport	0.00E+00
3	GO:0008612: peptidyl-lysine modification to peptidyl-hypusine	0.00E+00
4	GO:0071731: response to nitric oxide	0.00E+00
5	GO:0090069: regulation of ribosome biogenesis	0.00E+00
6	GO:1902184: negative regulation of shoot apical meristem development	0.00E+00
7	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
8	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
9	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
10	GO:0051050: positive regulation of transport	0.00E+00
11	GO:0001732: formation of cytoplasmic translation initiation complex	0.00E+00
12	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
13	GO:0002188: translation reinitiation	0.00E+00
14	GO:0031591: wybutosine biosynthetic process	0.00E+00
15	GO:0006364: rRNA processing	2.22E-20
16	GO:0010501: RNA secondary structure unwinding	9.72E-08
17	GO:0042254: ribosome biogenesis	1.20E-07
18	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.15E-06
19	GO:0009553: embryo sac development	1.23E-06
20	GO:0010162: seed dormancy process	1.06E-05
21	GO:0006412: translation	1.72E-05
22	GO:0042273: ribosomal large subunit biogenesis	2.94E-05
23	GO:0000469: cleavage involved in rRNA processing	2.00E-04
24	GO:0031118: rRNA pseudouridine synthesis	2.00E-04
25	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	2.00E-04
26	GO:0030490: maturation of SSU-rRNA	2.00E-04
27	GO:0000494: box C/D snoRNA 3'-end processing	2.00E-04
28	GO:0000972: transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	2.00E-04
29	GO:2000232: regulation of rRNA processing	2.00E-04
30	GO:0043985: histone H4-R3 methylation	2.00E-04
31	GO:1990258: histone glutamine methylation	2.00E-04
32	GO:0006169: adenosine salvage	2.00E-04
33	GO:0036228: protein targeting to nuclear inner membrane	2.00E-04
34	GO:0031120: snRNA pseudouridine synthesis	2.00E-04
35	GO:0080009: mRNA methylation	4.48E-04
36	GO:0045041: protein import into mitochondrial intermembrane space	4.48E-04
37	GO:0034470: ncRNA processing	4.48E-04
38	GO:0009451: RNA modification	6.21E-04
39	GO:0045039: protein import into mitochondrial inner membrane	7.29E-04
40	GO:0045604: regulation of epidermal cell differentiation	7.29E-04
41	GO:0009944: polarity specification of adaxial/abaxial axis	8.13E-04
42	GO:0007276: gamete generation	1.04E-03
43	GO:0009855: determination of bilateral symmetry	1.04E-03
44	GO:0051131: chaperone-mediated protein complex assembly	1.04E-03
45	GO:0007005: mitochondrion organization	1.07E-03
46	GO:0009294: DNA mediated transformation	1.16E-03
47	GO:0009561: megagametogenesis	1.26E-03
48	GO:0006479: protein methylation	1.38E-03
49	GO:1900864: mitochondrial RNA modification	1.38E-03
50	GO:0046345: abscisic acid catabolic process	1.38E-03
51	GO:0042274: ribosomal small subunit biogenesis	1.38E-03
52	GO:0000460: maturation of 5.8S rRNA	1.38E-03
53	GO:0016569: covalent chromatin modification	1.62E-03
54	GO:0044209: AMP salvage	1.76E-03
55	GO:0000380: alternative mRNA splicing, via spliceosome	1.76E-03
56	GO:0006405: RNA export from nucleus	1.76E-03
57	GO:0010375: stomatal complex patterning	1.76E-03
58	GO:0031167: rRNA methylation	1.76E-03
59	GO:0006396: RNA processing	1.82E-03
60	GO:0000470: maturation of LSU-rRNA	2.17E-03
61	GO:0016554: cytidine to uridine editing	2.17E-03
62	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.17E-03
63	GO:0048444: floral organ morphogenesis	2.60E-03
64	GO:0010077: maintenance of inflorescence meristem identity	2.60E-03
65	GO:0042026: protein refolding	2.60E-03
66	GO:0006458: 'de novo' protein folding	2.60E-03
67	GO:0032259: methylation	2.71E-03
68	GO:0006400: tRNA modification	3.06E-03
69	GO:0010374: stomatal complex development	3.06E-03
70	GO:0045995: regulation of embryonic development	3.06E-03
71	GO:0080186: developmental vegetative growth	3.06E-03
72	GO:0000028: ribosomal small subunit assembly	3.55E-03
73	GO:0042255: ribosome assembly	3.55E-03
74	GO:0009880: embryonic pattern specification	4.06E-03
75	GO:0001510: RNA methylation	4.06E-03
76	GO:0006261: DNA-dependent DNA replication	4.06E-03
77	GO:2000024: regulation of leaf development	4.60E-03
78	GO:0000387: spliceosomal snRNP assembly	5.15E-03
79	GO:1900865: chloroplast RNA modification	5.15E-03
80	GO:0030422: production of siRNA involved in RNA interference	5.74E-03
81	GO:0006259: DNA metabolic process	5.74E-03
82	GO:0006352: DNA-templated transcription, initiation	6.34E-03
83	GO:0006913: nucleocytoplasmic transport	6.34E-03
84	GO:0010582: floral meristem determinacy	6.96E-03
85	GO:0006626: protein targeting to mitochondrion	7.61E-03
86	GO:0006541: glutamine metabolic process	8.28E-03
87	GO:0010030: positive regulation of seed germination	8.97E-03
88	GO:0006457: protein folding	1.02E-02
89	GO:0045892: negative regulation of transcription, DNA-templated	1.03E-02
90	GO:0006406: mRNA export from nucleus	1.04E-02
91	GO:0000027: ribosomal large subunit assembly	1.04E-02
92	GO:0030150: protein import into mitochondrial matrix	1.04E-02
93	GO:0051302: regulation of cell division	1.12E-02
94	GO:0061077: chaperone-mediated protein folding	1.19E-02
95	GO:0000398: mRNA splicing, via spliceosome	1.32E-02
96	GO:0070417: cellular response to cold	1.52E-02
97	GO:0008033: tRNA processing	1.60E-02
98	GO:0000413: protein peptidyl-prolyl isomerization	1.60E-02
99	GO:0006606: protein import into nucleus	1.60E-02
100	GO:0010197: polar nucleus fusion	1.69E-02
101	GO:0009960: endosperm development	1.69E-02
102	GO:0006413: translational initiation	1.85E-02
103	GO:0048825: cotyledon development	1.87E-02
104	GO:0080156: mitochondrial mRNA modification	1.97E-02
105	GO:0016032: viral process	2.06E-02
106	GO:0009793: embryo development ending in seed dormancy	2.46E-02
107	GO:0006974: cellular response to DNA damage stimulus	2.76E-02
108	GO:0016049: cell growth	2.98E-02
109	GO:0048527: lateral root development	3.42E-02
110	GO:0046686: response to cadmium ion	3.84E-02
111	GO:0009640: photomorphogenesis	4.37E-02
112	GO:0009651: response to salt stress	4.53E-02
113	GO:0000154: rRNA modification	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0003922: GMP synthase (glutamine-hydrolyzing) activity	0.00E+00
2	GO:0016018: cyclosporin A binding	0.00E+00
3	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
4	GO:0004164: diphthine synthase activity	0.00E+00
5	GO:0034062: 5'-3' RNA polymerase activity	0.00E+00
6	GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity	0.00E+00
7	GO:0034038: deoxyhypusine synthase activity	0.00E+00
8	GO:0003723: RNA binding	7.00E-23
9	GO:0000166: nucleotide binding	6.87E-14
10	GO:0030515: snoRNA binding	5.04E-11
11	GO:0004004: ATP-dependent RNA helicase activity	5.39E-10
12	GO:0008026: ATP-dependent helicase activity	2.59E-09
13	GO:0003735: structural constituent of ribosome	8.22E-07
14	GO:0004407: histone deacetylase activity	1.10E-06
15	GO:0043021: ribonucleoprotein complex binding	1.89E-06
16	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.94E-06
17	GO:0008168: methyltransferase activity	1.86E-04
18	GO:1990259: histone-glutamine methyltransferase activity	2.00E-04
19	GO:0042134: rRNA primary transcript binding	2.00E-04
20	GO:0030371: translation repressor activity	2.00E-04
21	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.00E-04
22	GO:0004001: adenosine kinase activity	2.00E-04
23	GO:0001054: RNA polymerase I activity	4.04E-04
24	GO:0044183: protein binding involved in protein folding	4.04E-04
25	GO:0008649: rRNA methyltransferase activity	7.29E-04
26	GO:0070181: small ribosomal subunit rRNA binding	7.29E-04
27	GO:0003729: mRNA binding	1.04E-03
28	GO:0003689: DNA clamp loader activity	1.76E-03
29	GO:0016462: pyrophosphatase activity	2.17E-03
30	GO:0004519: endonuclease activity	3.29E-03
31	GO:0017056: structural constituent of nuclear pore	3.55E-03
32	GO:0008173: RNA methyltransferase activity	4.06E-03
33	GO:0050897: cobalt ion binding	4.21E-03
34	GO:0003678: DNA helicase activity	4.60E-03
35	GO:0003746: translation elongation factor activity	4.61E-03
36	GO:0005487: nucleocytoplasmic transporter activity	5.15E-03
37	GO:0001055: RNA polymerase II activity	5.15E-03
38	GO:0004521: endoribonuclease activity	6.96E-03
39	GO:0001056: RNA polymerase III activity	6.96E-03
40	GO:0000049: tRNA binding	6.96E-03
41	GO:0016787: hydrolase activity	7.20E-03
42	GO:0009982: pseudouridine synthase activity	7.61E-03
43	GO:0003725: double-stranded RNA binding	7.61E-03
44	GO:0051082: unfolded protein binding	1.14E-02
45	GO:0005524: ATP binding	1.18E-02
46	GO:0003924: GTPase activity	1.32E-02
47	GO:0019843: rRNA binding	1.43E-02
48	GO:0004527: exonuclease activity	1.69E-02
49	GO:0003713: transcription coactivator activity	1.69E-02
50	GO:0016887: ATPase activity	2.29E-02
51	GO:0003743: translation initiation factor activity	2.32E-02
52	GO:0008483: transaminase activity	2.35E-02
53	GO:0003676: nucleic acid binding	2.51E-02
54	GO:0004721: phosphoprotein phosphatase activity	2.87E-02
55	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.98E-02
56	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.09E-02
57	GO:0005515: protein binding	3.36E-02
58	GO:0003697: single-stranded DNA binding	3.65E-02
59	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.77E-02
60	GO:0005507: copper ion binding	4.20E-02
61	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0034457: Mpp10 complex	0.00E+00
2	GO:0071540: eukaryotic translation initiation factor 3 complex, eIF3e	0.00E+00
3	GO:0034455: t-UTP complex	0.00E+00
4	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
5	GO:0036396: MIS complex	0.00E+00
6	GO:0070545: PeBoW complex	0.00E+00
7	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
8	GO:0005730: nucleolus	2.87E-45
9	GO:0032040: small-subunit processome	6.11E-16
10	GO:0005634: nucleus	2.98E-11
11	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	8.67E-09
12	GO:0005834: heterotrimeric G-protein complex	9.23E-07
13	GO:0030687: preribosome, large subunit precursor	1.87E-06
14	GO:0005840: ribosome	1.87E-05
15	GO:0031428: box C/D snoRNP complex	6.98E-05
16	GO:0030688: preribosome, small subunit precursor	2.00E-04
17	GO:0043614: multi-eIF complex	2.00E-04
18	GO:0044611: nuclear pore inner ring	2.00E-04
19	GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m	2.00E-04
20	GO:0005736: DNA-directed RNA polymerase I complex	2.49E-04
21	GO:0015030: Cajal body	2.97E-04
22	GO:0005852: eukaryotic translation initiation factor 3 complex	4.04E-04
23	GO:0022627: cytosolic small ribosomal subunit	9.16E-04
24	GO:0015935: small ribosomal subunit	9.79E-04
25	GO:0031429: box H/ACA snoRNP complex	1.04E-03
26	GO:0005663: DNA replication factor C complex	1.38E-03
27	GO:0022626: cytosolic ribosome	1.55E-03
28	GO:0022625: cytosolic large ribosomal subunit	1.73E-03
29	GO:0000178: exosome (RNase complex)	1.76E-03
30	GO:0005654: nucleoplasm	2.25E-03
31	GO:0031597: cytosolic proteasome complex	2.60E-03
32	GO:0016363: nuclear matrix	2.60E-03
33	GO:0005829: cytosol	3.07E-03
34	GO:0005618: cell wall	3.10E-03
35	GO:0005759: mitochondrial matrix	3.11E-03
36	GO:0034399: nuclear periphery	3.55E-03
37	GO:0009506: plasmodesma	4.23E-03
38	GO:0005763: mitochondrial small ribosomal subunit	4.60E-03
39	GO:0008180: COP9 signalosome	4.60E-03
40	GO:0005666: DNA-directed RNA polymerase III complex	5.15E-03
41	GO:0000418: DNA-directed RNA polymerase IV complex	5.74E-03
42	GO:0005665: DNA-directed RNA polymerase II, core complex	6.96E-03
43	GO:0019013: viral nucleocapsid	7.61E-03
44	GO:0005681: spliceosomal complex	9.48E-03
45	GO:0000419: DNA-directed RNA polymerase V complex	9.68E-03
46	GO:0005747: mitochondrial respiratory chain complex I	9.79E-03
47	GO:0005758: mitochondrial intermembrane space	1.04E-02
48	GO:0042651: thylakoid membrane	1.12E-02
49	GO:0005743: mitochondrial inner membrane	1.20E-02
50	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.43E-02
51	GO:0005774: vacuolar membrane	1.82E-02
52	GO:0019898: extrinsic component of membrane	1.87E-02
53	GO:0016592: mediator complex	2.06E-02
54	GO:0030529: intracellular ribonucleoprotein complex	2.55E-02
55	GO:0005643: nuclear pore	3.09E-02
56	GO:0015934: large ribosomal subunit	3.42E-02
57	GO:0005737: cytoplasm	4.40E-02