Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G06500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015970: guanosine tetraphosphate biosynthetic process0.00E+00
2GO:1902039: negative regulation of seed dormancy process2.41E-05
3GO:0044419: interspecies interaction between organisms6.16E-05
4GO:0048838: release of seed from dormancy6.16E-05
5GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.09E-04
6GO:1902448: positive regulation of shade avoidance1.09E-04
7GO:0006470: protein dephosphorylation1.10E-04
8GO:0010286: heat acclimation1.60E-04
9GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.92E-04
10GO:0010029: regulation of seed germination1.92E-04
11GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.21E-04
12GO:0009414: response to water deprivation2.60E-04
13GO:0009247: glycolipid biosynthetic process2.84E-04
14GO:1900425: negative regulation of defense response to bacterium3.51E-04
15GO:0006401: RNA catabolic process4.92E-04
16GO:0071669: plant-type cell wall organization or biogenesis4.92E-04
17GO:0006364: rRNA processing5.25E-04
18GO:0019375: galactolipid biosynthetic process5.68E-04
19GO:1900150: regulation of defense response to fungus5.68E-04
20GO:0048193: Golgi vesicle transport6.45E-04
21GO:0010345: suberin biosynthetic process7.25E-04
22GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay7.25E-04
23GO:0009738: abscisic acid-activated signaling pathway7.52E-04
24GO:0009737: response to abscisic acid8.69E-04
25GO:0009790: embryo development1.05E-03
26GO:0006820: anion transport1.07E-03
27GO:0010030: positive regulation of seed germination1.35E-03
28GO:0046854: phosphatidylinositol phosphorylation1.35E-03
29GO:0010167: response to nitrate1.35E-03
30GO:0006970: response to osmotic stress2.03E-03
31GO:0000271: polysaccharide biosynthetic process2.33E-03
32GO:0010501: RNA secondary structure unwinding2.33E-03
33GO:0048653: anther development2.33E-03
34GO:0006814: sodium ion transport2.57E-03
35GO:0009749: response to glucose2.70E-03
36GO:0071805: potassium ion transmembrane transport3.35E-03
37GO:0051607: defense response to virus3.49E-03
38GO:0010027: thylakoid membrane organization3.63E-03
39GO:0030244: cellulose biosynthetic process4.34E-03
40GO:0009832: plant-type cell wall biogenesis4.49E-03
41GO:0010119: regulation of stomatal movement4.80E-03
42GO:0042542: response to hydrogen peroxide5.91E-03
43GO:0051707: response to other organism6.08E-03
44GO:0009611: response to wounding6.15E-03
45GO:0045893: positive regulation of transcription, DNA-templated6.90E-03
46GO:0006812: cation transport7.11E-03
47GO:0009846: pollen germination7.11E-03
48GO:0006813: potassium ion transport7.47E-03
49GO:0010224: response to UV-B7.65E-03
50GO:0006396: RNA processing9.75E-03
51GO:0009742: brassinosteroid mediated signaling pathway9.96E-03
52GO:0000398: mRNA splicing, via spliceosome1.06E-02
53GO:0006633: fatty acid biosynthetic process1.31E-02
54GO:0010150: leaf senescence1.40E-02
55GO:0010228: vegetative to reproductive phase transition of meristem1.45E-02
56GO:0009723: response to ethylene2.12E-02
57GO:0010200: response to chitin2.29E-02
58GO:0046777: protein autophosphorylation2.34E-02
59GO:0015979: photosynthesis2.45E-02
60GO:0007165: signal transduction2.55E-02
61GO:0009751: response to salicylic acid2.92E-02
62GO:0009408: response to heat2.95E-02
63GO:0048364: root development3.04E-02
64GO:0009753: response to jasmonic acid3.10E-02
65GO:0006355: regulation of transcription, DNA-templated3.30E-02
66GO:0009873: ethylene-activated signaling pathway3.54E-02
67GO:0006508: proteolysis3.75E-02
68GO:0006351: transcription, DNA-templated4.26E-02
69GO:0035556: intracellular signal transduction4.61E-02
RankGO TermAdjusted P value
1GO:0008419: RNA lariat debranching enzyme activity0.00E+00
2GO:0004722: protein serine/threonine phosphatase activity2.15E-05
3GO:0008728: GTP diphosphokinase activity6.16E-05
4GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity6.16E-05
5GO:0016307: phosphatidylinositol phosphate kinase activity6.16E-05
6GO:0005432: calcium:sodium antiporter activity1.62E-04
7GO:0035250: UDP-galactosyltransferase activity1.62E-04
8GO:0004004: ATP-dependent RNA helicase activity2.15E-04
9GO:0008381: mechanically-gated ion channel activity2.84E-04
10GO:0009922: fatty acid elongase activity2.84E-04
11GO:0003785: actin monomer binding2.84E-04
12GO:0051753: mannan synthase activity4.20E-04
13GO:0015491: cation:cation antiporter activity5.68E-04
14GO:0005267: potassium channel activity6.45E-04
15GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity8.92E-04
16GO:0000175: 3'-5'-exoribonuclease activity1.16E-03
17GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.45E-03
18GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.45E-03
19GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.45E-03
20GO:0004540: ribonuclease activity1.76E-03
21GO:0044212: transcription regulatory region DNA binding1.87E-03
22GO:0016760: cellulose synthase (UDP-forming) activity1.98E-03
23GO:0051015: actin filament binding3.08E-03
24GO:0016759: cellulose synthase activity3.22E-03
25GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.35E-03
26GO:0004721: phosphoprotein phosphatase activity4.05E-03
27GO:0016887: ATPase activity5.26E-03
28GO:0008234: cysteine-type peptidase activity8.02E-03
29GO:0016757: transferase activity, transferring glycosyl groups8.81E-03
30GO:0004386: helicase activity1.02E-02
31GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.14E-02
32GO:0004252: serine-type endopeptidase activity1.20E-02
33GO:0005524: ATP binding1.20E-02
34GO:0015297: antiporter activity1.36E-02
35GO:0003700: transcription factor activity, sequence-specific DNA binding1.45E-02
36GO:0043565: sequence-specific DNA binding1.48E-02
37GO:0008194: UDP-glycosyltransferase activity1.52E-02
38GO:0003677: DNA binding1.95E-02
39GO:0046872: metal ion binding2.09E-02
40GO:0008233: peptidase activity2.20E-02
41GO:0004497: monooxygenase activity2.23E-02
RankGO TermAdjusted P value
1GO:0000178: exosome (RNase complex)2.84E-04
2GO:0005778: peroxisomal membrane3.35E-03
3GO:0000932: P-body3.63E-03
4GO:0009706: chloroplast inner membrane9.56E-03
5GO:0005634: nucleus1.51E-02
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Gene type



Gene DE type