co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G05640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009667: plastid inner membrane organization	0.00E+00
2	GO:0009631: cold acclimation	3.64E-10
3	GO:0009409: response to cold	1.39E-08
4	GO:0006633: fatty acid biosynthetic process	7.93E-08
5	GO:0010143: cutin biosynthetic process	2.21E-07
6	GO:0042335: cuticle development	2.02E-06
7	GO:0010025: wax biosynthetic process	2.15E-05
8	GO:0035435: phosphate ion transmembrane transport	4.59E-05
9	GO:0009737: response to abscisic acid	6.10E-05
10	GO:0009809: lignin biosynthetic process	7.16E-05
11	GO:0009610: response to symbiotic fungus	8.59E-05
12	GO:0006970: response to osmotic stress	1.11E-04
13	GO:0009415: response to water	1.11E-04
14	GO:0009819: drought recovery	1.11E-04
15	GO:0015812: gamma-aminobutyric acid transport	1.54E-04
16	GO:0080051: cutin transport	1.54E-04
17	GO:0034472: snRNA 3'-end processing	1.54E-04
18	GO:0009609: response to symbiotic bacterium	1.54E-04
19	GO:0000038: very long-chain fatty acid metabolic process	2.81E-04
20	GO:0005983: starch catabolic process	3.23E-04
21	GO:0010150: leaf senescence	3.40E-04
22	GO:0010115: regulation of abscisic acid biosynthetic process	3.51E-04
23	GO:1901679: nucleotide transmembrane transport	3.51E-04
24	GO:0010353: response to trehalose	3.51E-04
25	GO:0015709: thiosulfate transport	3.51E-04
26	GO:0071422: succinate transmembrane transport	3.51E-04
27	GO:0031407: oxylipin metabolic process	3.51E-04
28	GO:0010289: homogalacturonan biosynthetic process	3.51E-04
29	GO:0015908: fatty acid transport	3.51E-04
30	GO:0006631: fatty acid metabolic process	4.44E-04
31	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	5.75E-04
32	GO:0046168: glycerol-3-phosphate catabolic process	5.75E-04
33	GO:0080121: AMP transport	5.75E-04
34	GO:0009269: response to desiccation	6.92E-04
35	GO:0010031: circumnutation	8.23E-04
36	GO:0009413: response to flooding	8.23E-04
37	GO:0051259: protein oligomerization	8.23E-04
38	GO:0006624: vacuolar protein processing	8.23E-04
39	GO:0015729: oxaloacetate transport	8.23E-04
40	GO:0006072: glycerol-3-phosphate metabolic process	8.23E-04
41	GO:0009416: response to light stimulus	8.86E-04
42	GO:0009611: response to wounding	9.20E-04
43	GO:0070417: cellular response to cold	9.61E-04
44	GO:0042631: cellular response to water deprivation	1.04E-03
45	GO:0010222: stem vascular tissue pattern formation	1.09E-03
46	GO:0022622: root system development	1.09E-03
47	GO:0006552: leucine catabolic process	1.09E-03
48	GO:0015867: ATP transport	1.09E-03
49	GO:0071585: detoxification of cadmium ion	1.09E-03
50	GO:0048868: pollen tube development	1.11E-03
51	GO:0000302: response to reactive oxygen species	1.36E-03
52	GO:0009247: glycolipid biosynthetic process	1.38E-03
53	GO:0071423: malate transmembrane transport	1.38E-03
54	GO:1900425: negative regulation of defense response to bacterium	1.70E-03
55	GO:0006574: valine catabolic process	1.70E-03
56	GO:0015866: ADP transport	1.70E-03
57	GO:0010286: heat acclimation	1.74E-03
58	GO:0045926: negative regulation of growth	2.03E-03
59	GO:0009082: branched-chain amino acid biosynthetic process	2.03E-03
60	GO:0098655: cation transmembrane transport	2.03E-03
61	GO:0010555: response to mannitol	2.03E-03
62	GO:0071470: cellular response to osmotic stress	2.03E-03
63	GO:1902074: response to salt	2.39E-03
64	GO:0032880: regulation of protein localization	2.39E-03
65	GO:0006401: RNA catabolic process	2.39E-03
66	GO:0030497: fatty acid elongation	2.39E-03
67	GO:0008272: sulfate transport	2.39E-03
68	GO:0009873: ethylene-activated signaling pathway	2.44E-03
69	GO:0019375: galactolipid biosynthetic process	2.77E-03
70	GO:2000070: regulation of response to water deprivation	2.77E-03
71	GO:0050821: protein stabilization	2.77E-03
72	GO:0007155: cell adhesion	2.77E-03
73	GO:0009414: response to water deprivation	2.91E-03
74	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	3.58E-03
75	GO:0010345: suberin biosynthetic process	3.58E-03
76	GO:0098656: anion transmembrane transport	3.58E-03
77	GO:0006839: mitochondrial transport	3.66E-03
78	GO:0042761: very long-chain fatty acid biosynthetic process	4.01E-03
79	GO:2000280: regulation of root development	4.01E-03
80	GO:0009744: response to sucrose	4.13E-03
81	GO:0051707: response to other organism	4.13E-03
82	GO:0009644: response to high light intensity	4.47E-03
83	GO:0018119: peptidyl-cysteine S-nitrosylation	4.92E-03
84	GO:0030148: sphingolipid biosynthetic process	4.92E-03
85	GO:0010015: root morphogenesis	4.92E-03
86	GO:0042538: hyperosmotic salinity response	5.18E-03
87	GO:0016024: CDP-diacylglycerol biosynthetic process	5.41E-03
88	GO:0045037: protein import into chloroplast stroma	5.41E-03
89	GO:0006364: rRNA processing	5.56E-03
90	GO:0050826: response to freezing	5.91E-03
91	GO:0009725: response to hormone	5.91E-03
92	GO:0010588: cotyledon vascular tissue pattern formation	5.91E-03
93	GO:2000012: regulation of auxin polar transport	5.91E-03
94	GO:0050832: defense response to fungus	6.61E-03
95	GO:0048367: shoot system development	6.78E-03
96	GO:0006636: unsaturated fatty acid biosynthetic process	7.49E-03
97	GO:0009833: plant-type primary cell wall biogenesis	7.49E-03
98	GO:0016042: lipid catabolic process	7.96E-03
99	GO:0030150: protein import into mitochondrial matrix	8.05E-03
100	GO:0009651: response to salt stress	8.38E-03
101	GO:0009695: jasmonic acid biosynthetic process	8.63E-03
102	GO:0031408: oxylipin biosynthetic process	9.22E-03
103	GO:0003333: amino acid transmembrane transport	9.22E-03
104	GO:0051260: protein homooligomerization	9.22E-03
105	GO:0010017: red or far-red light signaling pathway	9.82E-03
106	GO:0001944: vasculature development	1.04E-02
107	GO:0019722: calcium-mediated signaling	1.11E-02
108	GO:0071555: cell wall organization	1.15E-02
109	GO:0008284: positive regulation of cell proliferation	1.17E-02
110	GO:0010501: RNA secondary structure unwinding	1.24E-02
111	GO:0000226: microtubule cytoskeleton organization	1.24E-02
112	GO:0071472: cellular response to salt stress	1.31E-02
113	GO:0009958: positive gravitropism	1.31E-02
114	GO:0007623: circadian rhythm	1.37E-02
115	GO:0009749: response to glucose	1.44E-02
116	GO:0008654: phospholipid biosynthetic process	1.44E-02
117	GO:0010090: trichome morphogenesis	1.66E-02
118	GO:0007267: cell-cell signaling	1.81E-02
119	GO:0010027: thylakoid membrane organization	1.97E-02
120	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.05E-02
121	GO:0010029: regulation of seed germination	2.05E-02
122	GO:0006974: cellular response to DNA damage stimulus	2.13E-02
123	GO:0005975: carbohydrate metabolic process	2.16E-02
124	GO:0030244: cellulose biosynthetic process	2.38E-02
125	GO:0009832: plant-type cell wall biogenesis	2.46E-02
126	GO:0010311: lateral root formation	2.46E-02
127	GO:0006811: ion transport	2.55E-02
128	GO:0048527: lateral root development	2.64E-02
129	GO:0010200: response to chitin	2.73E-02
130	GO:0055114: oxidation-reduction process	3.24E-02
131	GO:0006869: lipid transport	3.46E-02
132	GO:0000209: protein polyubiquitination	3.47E-02
133	GO:0032259: methylation	3.72E-02
134	GO:0006629: lipid metabolic process	3.89E-02
135	GO:0048364: root development	4.05E-02
136	GO:0051603: proteolysis involved in cellular protein catabolic process	4.27E-02
137	GO:0006857: oligopeptide transport	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0005534: galactose binding	0.00E+00
2	GO:0009922: fatty acid elongase activity	4.50E-10
3	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.33E-09
4	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.33E-09
5	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.33E-09
6	GO:0052747: sinapyl alcohol dehydrogenase activity	1.50E-06
7	GO:0070330: aromatase activity	4.34E-06
8	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.45E-06
9	GO:0018685: alkane 1-monooxygenase activity	3.07E-05
10	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.59E-05
11	GO:0016746: transferase activity, transferring acyl groups	1.43E-04
12	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.54E-04
13	GO:0015245: fatty acid transporter activity	1.54E-04
14	GO:0050521: alpha-glucan, water dikinase activity	1.54E-04
15	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.54E-04
16	GO:0052631: sphingolipid delta-8 desaturase activity	1.54E-04
17	GO:1901677: phosphate transmembrane transporter activity	3.51E-04
18	GO:0015180: L-alanine transmembrane transporter activity	3.51E-04
19	GO:0016629: 12-oxophytodienoate reductase activity	3.51E-04
20	GO:0042389: omega-3 fatty acid desaturase activity	3.51E-04
21	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	3.51E-04
22	GO:0015117: thiosulfate transmembrane transporter activity	3.51E-04
23	GO:0046423: allene-oxide cyclase activity	5.75E-04
24	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	5.75E-04
25	GO:0005310: dicarboxylic acid transmembrane transporter activity	5.75E-04
26	GO:0015141: succinate transmembrane transporter activity	5.75E-04
27	GO:0035250: UDP-galactosyltransferase activity	8.23E-04
28	GO:0052656: L-isoleucine transaminase activity	8.23E-04
29	GO:0052654: L-leucine transaminase activity	8.23E-04
30	GO:0052655: L-valine transaminase activity	8.23E-04
31	GO:0015189: L-lysine transmembrane transporter activity	8.23E-04
32	GO:0015181: arginine transmembrane transporter activity	8.23E-04
33	GO:0015131: oxaloacetate transmembrane transporter activity	8.23E-04
34	GO:0005313: L-glutamate transmembrane transporter activity	1.09E-03
35	GO:0004084: branched-chain-amino-acid transaminase activity	1.09E-03
36	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.38E-03
37	GO:0080122: AMP transmembrane transporter activity	1.38E-03
38	GO:0016791: phosphatase activity	1.64E-03
39	GO:0004556: alpha-amylase activity	1.70E-03
40	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.70E-03
41	GO:0005347: ATP transmembrane transporter activity	2.03E-03
42	GO:0015217: ADP transmembrane transporter activity	2.03E-03
43	GO:0102391: decanoate--CoA ligase activity	2.03E-03
44	GO:0004467: long-chain fatty acid-CoA ligase activity	2.39E-03
45	GO:0016621: cinnamoyl-CoA reductase activity	2.39E-03
46	GO:0015140: malate transmembrane transporter activity	2.39E-03
47	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.42E-03
48	GO:0008289: lipid binding	2.74E-03
49	GO:0015288: porin activity	2.77E-03
50	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.16E-03
51	GO:0016788: hydrolase activity, acting on ester bonds	3.92E-03
52	GO:0004864: protein phosphatase inhibitor activity	4.46E-03
53	GO:0015116: sulfate transmembrane transporter activity	5.41E-03
54	GO:0052689: carboxylic ester hydrolase activity	5.72E-03
55	GO:0015114: phosphate ion transmembrane transporter activity	5.91E-03
56	GO:0000175: 3'-5'-exoribonuclease activity	5.91E-03
57	GO:0015266: protein channel activity	5.91E-03
58	GO:0015171: amino acid transmembrane transporter activity	6.15E-03
59	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.42E-03
60	GO:0008083: growth factor activity	6.42E-03
61	GO:0004540: ribonuclease activity	9.22E-03
62	GO:0016760: cellulose synthase (UDP-forming) activity	1.04E-02
63	GO:0018024: histone-lysine N-methyltransferase activity	1.17E-02
64	GO:0015297: antiporter activity	1.31E-02
65	GO:0010181: FMN binding	1.37E-02
66	GO:0004872: receptor activity	1.44E-02
67	GO:0004197: cysteine-type endopeptidase activity	1.59E-02
68	GO:0016759: cellulose synthase activity	1.74E-02
69	GO:0004004: ATP-dependent RNA helicase activity	2.21E-02
70	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.38E-02
71	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.43E-02
72	GO:0005096: GTPase activator activity	2.46E-02
73	GO:0051287: NAD binding	3.86E-02
74	GO:0031625: ubiquitin protein ligase binding	4.48E-02
75	GO:0045330: aspartyl esterase activity	4.48E-02
76	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0032039: integrator complex	0.00E+00
2	GO:0034426: etioplast membrane	0.00E+00
3	GO:0046658: anchored component of plasma membrane	6.75E-05
4	GO:0031357: integral component of chloroplast inner membrane	3.51E-04
5	GO:0042170: plastid membrane	3.51E-04
6	GO:0031225: anchored component of membrane	4.60E-04
7	GO:0009897: external side of plasma membrane	5.75E-04
8	GO:0009941: chloroplast envelope	6.34E-04
9	GO:0009331: glycerol-3-phosphate dehydrogenase complex	8.23E-04
10	GO:0009527: plastid outer membrane	1.09E-03
11	GO:0009505: plant-type cell wall	1.21E-03
12	GO:0000178: exosome (RNase complex)	1.38E-03
13	GO:0005778: peroxisomal membrane	1.74E-03
14	GO:0005783: endoplasmic reticulum	1.76E-03
15	GO:0031305: integral component of mitochondrial inner membrane	2.77E-03
16	GO:0046930: pore complex	3.16E-03
17	GO:0016021: integral component of membrane	3.68E-03
18	GO:0016020: membrane	4.36E-03
19	GO:0009706: chloroplast inner membrane	7.91E-03
20	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.11E-02
21	GO:0005615: extracellular space	1.54E-02
22	GO:0005694: chromosome	1.59E-02
23	GO:0000932: P-body	1.97E-02
24	GO:0005576: extracellular region	2.33E-02
25	GO:0009707: chloroplast outer membrane	2.38E-02
26	GO:0005743: mitochondrial inner membrane	3.62E-02
27	GO:0031966: mitochondrial membrane	3.96E-02
28	GO:0009506: plasmodesma	4.83E-02