co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G05120

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
2	GO:0045740: positive regulation of DNA replication	0.00E+00
3	GO:0006720: isoprenoid metabolic process	0.00E+00
4	GO:0048870: cell motility	0.00E+00
5	GO:0015822: ornithine transport	0.00E+00
6	GO:0036172: thiamine salvage	0.00E+00
7	GO:0019450: L-cysteine catabolic process to pyruvate	0.00E+00
8	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
9	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
10	GO:0046460: neutral lipid biosynthetic process	0.00E+00
11	GO:0006796: phosphate-containing compound metabolic process	7.50E-05
12	GO:0006012: galactose metabolic process	8.92E-05
13	GO:0000066: mitochondrial ornithine transport	2.09E-04
14	GO:0034970: histone H3-R2 methylation	2.09E-04
15	GO:0016487: farnesol metabolic process	2.09E-04
16	GO:0034972: histone H3-R26 methylation	2.09E-04
17	GO:0034971: histone H3-R17 methylation	2.09E-04
18	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.66E-04
19	GO:0044419: interspecies interaction between organisms	4.66E-04
20	GO:0007163: establishment or maintenance of cell polarity	4.66E-04
21	GO:0006432: phenylalanyl-tRNA aminoacylation	4.66E-04
22	GO:0007154: cell communication	4.66E-04
23	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.66E-04
24	GO:0019441: tryptophan catabolic process to kynurenine	4.66E-04
25	GO:0009220: pyrimidine ribonucleotide biosynthetic process	4.66E-04
26	GO:0032259: methylation	6.40E-04
27	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	7.59E-04
28	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	7.59E-04
29	GO:0071492: cellular response to UV-A	7.59E-04
30	GO:0009399: nitrogen fixation	1.08E-03
31	GO:0009963: positive regulation of flavonoid biosynthetic process	1.08E-03
32	GO:0006516: glycoprotein catabolic process	1.08E-03
33	GO:0009647: skotomorphogenesis	1.08E-03
34	GO:0006882: cellular zinc ion homeostasis	1.08E-03
35	GO:0006542: glutamine biosynthetic process	1.44E-03
36	GO:0071486: cellular response to high light intensity	1.44E-03
37	GO:0009765: photosynthesis, light harvesting	1.44E-03
38	GO:0071249: cellular response to nitrate	1.44E-03
39	GO:0006221: pyrimidine nucleotide biosynthetic process	1.44E-03
40	GO:0051567: histone H3-K9 methylation	1.44E-03
41	GO:0009649: entrainment of circadian clock	1.44E-03
42	GO:0008295: spermidine biosynthetic process	1.44E-03
43	GO:0006749: glutathione metabolic process	1.44E-03
44	GO:0044205: 'de novo' UMP biosynthetic process	1.44E-03
45	GO:0034613: cellular protein localization	1.44E-03
46	GO:0080022: primary root development	1.56E-03
47	GO:0009229: thiamine diphosphate biosynthetic process	1.83E-03
48	GO:0030041: actin filament polymerization	1.83E-03
49	GO:0046283: anthocyanin-containing compound metabolic process	1.83E-03
50	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.26E-03
51	GO:0016070: RNA metabolic process	2.26E-03
52	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.26E-03
53	GO:0031053: primary miRNA processing	2.26E-03
54	GO:0045962: positive regulation of development, heterochronic	2.26E-03
55	GO:0007035: vacuolar acidification	2.26E-03
56	GO:0009228: thiamine biosynthetic process	2.26E-03
57	GO:0042793: transcription from plastid promoter	2.26E-03
58	GO:0009117: nucleotide metabolic process	2.26E-03
59	GO:0006574: valine catabolic process	2.26E-03
60	GO:0016458: gene silencing	2.26E-03
61	GO:0010090: trichome morphogenesis	2.35E-03
62	GO:0034389: lipid particle organization	2.71E-03
63	GO:0007050: cell cycle arrest	3.20E-03
64	GO:0006826: iron ion transport	3.20E-03
65	GO:0000082: G1/S transition of mitotic cell cycle	3.20E-03
66	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	3.20E-03
67	GO:0030026: cellular manganese ion homeostasis	3.20E-03
68	GO:0045010: actin nucleation	3.71E-03
69	GO:0045292: mRNA cis splicing, via spliceosome	3.71E-03
70	GO:0009704: de-etiolation	3.71E-03
71	GO:0000028: ribosomal small subunit assembly	3.71E-03
72	GO:0019430: removal of superoxide radicals	4.24E-03
73	GO:0006526: arginine biosynthetic process	4.24E-03
74	GO:0048527: lateral root development	4.48E-03
75	GO:0000902: cell morphogenesis	4.80E-03
76	GO:0015780: nucleotide-sugar transport	4.80E-03
77	GO:0098656: anion transmembrane transport	4.80E-03
78	GO:0019432: triglyceride biosynthetic process	4.80E-03
79	GO:0006839: mitochondrial transport	5.60E-03
80	GO:0045036: protein targeting to chloroplast	5.99E-03
81	GO:0009641: shade avoidance	5.99E-03
82	GO:0055062: phosphate ion homeostasis	5.99E-03
83	GO:0006816: calcium ion transport	6.62E-03
84	GO:0072593: reactive oxygen species metabolic process	6.62E-03
85	GO:0009965: leaf morphogenesis	7.11E-03
86	GO:0010152: pollen maturation	7.28E-03
87	GO:0050826: response to freezing	7.96E-03
88	GO:0010102: lateral root morphogenesis	7.96E-03
89	GO:0048440: carpel development	8.66E-03
90	GO:0006446: regulation of translational initiation	8.66E-03
91	GO:0010224: response to UV-B	8.83E-03
92	GO:0010039: response to iron ion	9.37E-03
93	GO:0006071: glycerol metabolic process	1.01E-02
94	GO:0034976: response to endoplasmic reticulum stress	1.01E-02
95	GO:2000377: regulation of reactive oxygen species metabolic process	1.09E-02
96	GO:0009116: nucleoside metabolic process	1.09E-02
97	GO:0010431: seed maturation	1.25E-02
98	GO:0019915: lipid storage	1.25E-02
99	GO:0006306: DNA methylation	1.25E-02
100	GO:0016226: iron-sulfur cluster assembly	1.33E-02
101	GO:0005975: carbohydrate metabolic process	1.34E-02
102	GO:0016042: lipid catabolic process	1.38E-02
103	GO:0048443: stamen development	1.50E-02
104	GO:0015991: ATP hydrolysis coupled proton transport	1.68E-02
105	GO:0042391: regulation of membrane potential	1.68E-02
106	GO:0010268: brassinosteroid homeostasis	1.77E-02
107	GO:0008654: phospholipid biosynthetic process	1.96E-02
108	GO:0016132: brassinosteroid biosynthetic process	2.06E-02
109	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.06E-02
110	GO:0007623: circadian rhythm	2.11E-02
111	GO:1901657: glycosyl compound metabolic process	2.25E-02
112	GO:0016125: sterol metabolic process	2.36E-02
113	GO:0055114: oxidation-reduction process	2.60E-02
114	GO:0016126: sterol biosynthetic process	2.67E-02
115	GO:0042128: nitrate assimilation	2.89E-02
116	GO:0006974: cellular response to DNA damage stimulus	2.89E-02
117	GO:0010411: xyloglucan metabolic process	3.00E-02
118	GO:0048573: photoperiodism, flowering	3.00E-02
119	GO:0010311: lateral root formation	3.34E-02
120	GO:0009407: toxin catabolic process	3.46E-02
121	GO:0009631: cold acclimation	3.58E-02
122	GO:0010119: regulation of stomatal movement	3.58E-02
123	GO:0048366: leaf development	3.84E-02
124	GO:0006810: transport	3.87E-02
125	GO:0046777: protein autophosphorylation	4.32E-02
126	GO:0009926: auxin polar transport	4.57E-02
127	GO:0009640: photomorphogenesis	4.57E-02
128	GO:0045454: cell redox homeostasis	4.83E-02
129	GO:0008643: carbohydrate transport	4.84E-02
130	GO:0009636: response to toxic substance	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
2	GO:0052670: geraniol kinase activity	0.00E+00
3	GO:0052668: farnesol kinase activity	0.00E+00
4	GO:0080146: L-cysteine desulfhydrase activity	0.00E+00
5	GO:0009008: DNA-methyltransferase activity	0.00E+00
6	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
7	GO:0052671: geranylgeraniol kinase activity	0.00E+00
8	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
9	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
10	GO:0004588: orotate phosphoribosyltransferase activity	0.00E+00
11	GO:0004590: orotidine-5'-phosphate decarboxylase activity	0.00E+00
12	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
13	GO:0008170: N-methyltransferase activity	0.00E+00
14	GO:0004034: aldose 1-epimerase activity	3.20E-06
15	GO:0008168: methyltransferase activity	2.51E-05
16	GO:0004427: inorganic diphosphatase activity	1.37E-04
17	GO:0046480: galactolipid galactosyltransferase activity	2.09E-04
18	GO:0080079: cellobiose glucosidase activity	2.09E-04
19	GO:0004560: alpha-L-fucosidase activity	2.09E-04
20	GO:0015085: calcium ion transmembrane transporter activity	2.09E-04
21	GO:0019707: protein-cysteine S-acyltransferase activity	2.09E-04
22	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.66E-04
23	GO:0004766: spermidine synthase activity	4.66E-04
24	GO:0000064: L-ornithine transmembrane transporter activity	4.66E-04
25	GO:0004826: phenylalanine-tRNA ligase activity	4.66E-04
26	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.66E-04
27	GO:0004061: arylformamidase activity	4.66E-04
28	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.66E-04
29	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	7.59E-04
30	GO:0008469: histone-arginine N-methyltransferase activity	7.59E-04
31	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	7.59E-04
32	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.59E-04
33	GO:0004848: ureidoglycolate hydrolase activity	7.59E-04
34	GO:0032403: protein complex binding	7.59E-04
35	GO:0000254: C-4 methylsterol oxidase activity	1.08E-03
36	GO:0035529: NADH pyrophosphatase activity	1.08E-03
37	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.08E-03
38	GO:0000339: RNA cap binding	1.08E-03
39	GO:0015368: calcium:cation antiporter activity	1.44E-03
40	GO:0010011: auxin binding	1.44E-03
41	GO:0015369: calcium:proton antiporter activity	1.44E-03
42	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.44E-03
43	GO:0008080: N-acetyltransferase activity	1.68E-03
44	GO:0022857: transmembrane transporter activity	1.76E-03
45	GO:0016853: isomerase activity	1.81E-03
46	GO:0004356: glutamate-ammonia ligase activity	1.83E-03
47	GO:0004605: phosphatidate cytidylyltransferase activity	2.26E-03
48	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.26E-03
49	GO:0004784: superoxide dismutase activity	2.26E-03
50	GO:0016462: pyrophosphatase activity	2.26E-03
51	GO:0005261: cation channel activity	2.71E-03
52	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.71E-03
53	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.71E-03
54	GO:0004144: diacylglycerol O-acyltransferase activity	2.71E-03
55	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.20E-03
56	GO:0008143: poly(A) binding	3.20E-03
57	GO:0015078: hydrogen ion transmembrane transporter activity	4.24E-03
58	GO:0042802: identical protein binding	5.14E-03
59	GO:0008047: enzyme activator activity	5.99E-03
60	GO:0004860: protein kinase inhibitor activity	6.62E-03
61	GO:0004129: cytochrome-c oxidase activity	6.62E-03
62	GO:0046961: proton-transporting ATPase activity, rotational mechanism	6.62E-03
63	GO:0051537: 2 iron, 2 sulfur cluster binding	6.85E-03
64	GO:0008378: galactosyltransferase activity	7.28E-03
65	GO:0000049: tRNA binding	7.28E-03
66	GO:0051287: NAD binding	7.66E-03
67	GO:0005315: inorganic phosphate transmembrane transporter activity	7.96E-03
68	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.66E-03
69	GO:0030552: cAMP binding	9.37E-03
70	GO:0030553: cGMP binding	9.37E-03
71	GO:0005216: ion channel activity	1.17E-02
72	GO:0008324: cation transmembrane transporter activity	1.17E-02
73	GO:0004176: ATP-dependent peptidase activity	1.25E-02
74	GO:0008514: organic anion transmembrane transporter activity	1.50E-02
75	GO:0003756: protein disulfide isomerase activity	1.50E-02
76	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.57E-02
77	GO:0005249: voltage-gated potassium channel activity	1.68E-02
78	GO:0030551: cyclic nucleotide binding	1.68E-02
79	GO:0048038: quinone binding	2.06E-02
80	GO:0016787: hydrolase activity	2.40E-02
81	GO:0008237: metallopeptidase activity	2.46E-02
82	GO:0016413: O-acetyltransferase activity	2.57E-02
83	GO:0016168: chlorophyll binding	2.78E-02
84	GO:0008375: acetylglucosaminyltransferase activity	2.89E-02
85	GO:0004806: triglyceride lipase activity	3.00E-02
86	GO:0030247: polysaccharide binding	3.00E-02
87	GO:0046982: protein heterodimerization activity	3.21E-02
88	GO:0000287: magnesium ion binding	3.21E-02
89	GO:0016788: hydrolase activity, acting on ester bonds	3.33E-02
90	GO:0004222: metalloendopeptidase activity	3.46E-02
91	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.46E-02
92	GO:0004497: monooxygenase activity	4.04E-02
93	GO:0008422: beta-glucosidase activity	4.07E-02
94	GO:0030246: carbohydrate binding	4.23E-02
95	GO:0004364: glutathione transferase activity	4.45E-02
96	GO:0052689: carboxylic ester hydrolase activity	4.46E-02
97	GO:0019825: oxygen binding	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.31E-04
2	GO:0000152: nuclear ubiquitin ligase complex	2.09E-04
3	GO:0005845: mRNA cap binding complex	2.09E-04
4	GO:0005846: nuclear cap binding complex	4.66E-04
5	GO:0042646: plastid nucleoid	1.08E-03
6	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.44E-03
7	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.83E-03
8	GO:0005829: cytosol	2.01E-03
9	GO:0031209: SCAR complex	2.26E-03
10	GO:0009295: nucleoid	2.66E-03
11	GO:0009536: plastid	2.73E-03
12	GO:0031359: integral component of chloroplast outer membrane	3.20E-03
13	GO:0005811: lipid particle	4.24E-03
14	GO:0005763: mitochondrial small ribosomal subunit	4.80E-03
15	GO:0042644: chloroplast nucleoid	4.80E-03
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.80E-03
17	GO:0016604: nuclear body	5.38E-03
18	GO:0009508: plastid chromosome	7.96E-03
19	GO:0031969: chloroplast membrane	8.69E-03
20	GO:0016021: integral component of membrane	1.13E-02
21	GO:0009706: chloroplast inner membrane	1.22E-02
22	GO:0005743: mitochondrial inner membrane	1.30E-02
23	GO:0009941: chloroplast envelope	1.43E-02
24	GO:0005654: nucleoplasm	1.49E-02
25	GO:0009523: photosystem II	1.96E-02
26	GO:0071944: cell periphery	2.25E-02
27	GO:0005778: peroxisomal membrane	2.46E-02
28	GO:0009707: chloroplast outer membrane	3.23E-02
29	GO:0005783: endoplasmic reticulum	3.23E-02
30	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.58E-02
31	GO:0016020: membrane	3.65E-02
32	GO:0005773: vacuole	4.50E-02
33	GO:0005856: cytoskeleton	4.97E-02