co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G05100

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032350: regulation of hormone metabolic process	0.00E+00
2	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
3	GO:0045930: negative regulation of mitotic cell cycle	0.00E+00
4	GO:0009092: homoserine metabolic process	0.00E+00
5	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
6	GO:0033206: meiotic cytokinesis	5.03E-05
7	GO:0016560: protein import into peroxisome matrix, docking	1.23E-04
8	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	1.23E-04
9	GO:0006591: ornithine metabolic process	2.11E-04
10	GO:0009653: anatomical structure morphogenesis	2.11E-04
11	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	2.11E-04
12	GO:0010476: gibberellin mediated signaling pathway	2.11E-04
13	GO:0010325: raffinose family oligosaccharide biosynthetic process	2.11E-04
14	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	4.15E-04
15	GO:0006625: protein targeting to peroxisome	4.15E-04
16	GO:0008295: spermidine biosynthetic process	4.15E-04
17	GO:0006749: glutathione metabolic process	4.15E-04
18	GO:0009956: radial pattern formation	4.15E-04
19	GO:0006808: regulation of nitrogen utilization	4.15E-04
20	GO:0006544: glycine metabolic process	5.26E-04
21	GO:0051568: histone H3-K4 methylation	6.44E-04
22	GO:0006014: D-ribose metabolic process	6.44E-04
23	GO:0006563: L-serine metabolic process	6.44E-04
24	GO:2000033: regulation of seed dormancy process	7.68E-04
25	GO:0009099: valine biosynthetic process	7.68E-04
26	GO:0009088: threonine biosynthetic process	7.68E-04
27	GO:0048444: floral organ morphogenesis	7.68E-04
28	GO:0006839: mitochondrial transport	8.56E-04
29	GO:0006826: iron ion transport	8.97E-04
30	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	1.03E-03
31	GO:0010233: phloem transport	1.17E-03
32	GO:0009097: isoleucine biosynthetic process	1.17E-03
33	GO:0010100: negative regulation of photomorphogenesis	1.17E-03
34	GO:0006526: arginine biosynthetic process	1.17E-03
35	GO:0032259: methylation	1.17E-03
36	GO:0048507: meristem development	1.32E-03
37	GO:0009056: catabolic process	1.32E-03
38	GO:0035999: tetrahydrofolate interconversion	1.47E-03
39	GO:0009098: leucine biosynthetic process	1.47E-03
40	GO:0009086: methionine biosynthetic process	1.47E-03
41	GO:0008356: asymmetric cell division	1.47E-03
42	GO:0050826: response to freezing	2.14E-03
43	GO:0007031: peroxisome organization	2.50E-03
44	GO:0080188: RNA-directed DNA methylation	2.50E-03
45	GO:0010039: response to iron ion	2.50E-03
46	GO:0034976: response to endoplasmic reticulum stress	2.69E-03
47	GO:0006863: purine nucleobase transport	2.69E-03
48	GO:0009863: salicylic acid mediated signaling pathway	2.88E-03
49	GO:0010187: negative regulation of seed germination	2.88E-03
50	GO:2000377: regulation of reactive oxygen species metabolic process	2.88E-03
51	GO:0016575: histone deacetylation	3.08E-03
52	GO:0006874: cellular calcium ion homeostasis	3.08E-03
53	GO:0006306: DNA methylation	3.29E-03
54	GO:0009739: response to gibberellin	3.43E-03
55	GO:0016226: iron-sulfur cluster assembly	3.50E-03
56	GO:0080092: regulation of pollen tube growth	3.50E-03
57	GO:0006012: galactose metabolic process	3.71E-03
58	GO:0006520: cellular amino acid metabolic process	4.60E-03
59	GO:0055072: iron ion homeostasis	5.07E-03
60	GO:0031047: gene silencing by RNA	5.56E-03
61	GO:1901657: glycosyl compound metabolic process	5.81E-03
62	GO:0016126: sterol biosynthetic process	6.85E-03
63	GO:0010029: regulation of seed germination	7.12E-03
64	GO:0009407: toxin catabolic process	8.82E-03
65	GO:0010218: response to far red light	8.82E-03
66	GO:0009867: jasmonic acid mediated signaling pathway	9.73E-03
67	GO:0009636: response to toxic substance	1.26E-02
68	GO:0042538: hyperosmotic salinity response	1.37E-02
69	GO:0009585: red, far-red light phototransduction	1.44E-02
70	GO:0009909: regulation of flower development	1.54E-02
71	GO:0009620: response to fungus	1.73E-02
72	GO:0009740: gibberellic acid mediated signaling pathway	1.77E-02
73	GO:0016310: phosphorylation	1.93E-02
74	GO:0040008: regulation of growth	2.63E-02
75	GO:0009617: response to bacterium	3.08E-02
76	GO:0009723: response to ethylene	4.12E-02
77	GO:0048366: leaf development	4.17E-02
78	GO:0080167: response to karrikin	4.32E-02
79	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.43E-02
80	GO:0046777: protein autophosphorylation	4.54E-02
81	GO:0006810: transport	4.56E-02
82	GO:0044550: secondary metabolite biosynthetic process	4.59E-02
83	GO:0045454: cell redox homeostasis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
2	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
3	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
4	GO:0046480: galactolipid galactosyltransferase activity	5.03E-05
5	GO:0080079: cellobiose glucosidase activity	5.03E-05
6	GO:0004413: homoserine kinase activity	5.03E-05
7	GO:0004766: spermidine synthase activity	1.23E-04
8	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.23E-04
9	GO:0016743: carboxyl- or carbamoyltransferase activity	1.23E-04
10	GO:1990585: hydroxyproline O-arabinosyltransferase activity	1.23E-04
11	GO:0010331: gibberellin binding	1.23E-04
12	GO:0008080: N-acetyltransferase activity	2.60E-04
13	GO:0052655: L-valine transaminase activity	3.09E-04
14	GO:0000254: C-4 methylsterol oxidase activity	3.09E-04
15	GO:0052656: L-isoleucine transaminase activity	3.09E-04
16	GO:0052654: L-leucine transaminase activity	3.09E-04
17	GO:0004084: branched-chain-amino-acid transaminase activity	4.15E-04
18	GO:0005319: lipid transporter activity	4.15E-04
19	GO:0004372: glycine hydroxymethyltransferase activity	5.26E-04
20	GO:0008168: methyltransferase activity	5.57E-04
21	GO:0004747: ribokinase activity	7.68E-04
22	GO:0004034: aldose 1-epimerase activity	1.03E-03
23	GO:0000989: transcription factor activity, transcription factor binding	1.32E-03
24	GO:0008047: enzyme activator activity	1.63E-03
25	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.79E-03
26	GO:0008378: galactosyltransferase activity	1.96E-03
27	GO:0008131: primary amine oxidase activity	2.32E-03
28	GO:0005217: intracellular ligand-gated ion channel activity	2.50E-03
29	GO:0004970: ionotropic glutamate receptor activity	2.50E-03
30	GO:0005345: purine nucleobase transmembrane transporter activity	3.08E-03
31	GO:0033612: receptor serine/threonine kinase binding	3.29E-03
32	GO:0003756: protein disulfide isomerase activity	3.93E-03
33	GO:0005102: receptor binding	4.15E-03
34	GO:0016597: amino acid binding	6.59E-03
35	GO:0003824: catalytic activity	6.95E-03
36	GO:0008375: acetylglucosaminyltransferase activity	7.40E-03
37	GO:0016757: transferase activity, transferring glycosyl groups	7.43E-03
38	GO:0008422: beta-glucosidase activity	1.03E-02
39	GO:0004364: glutathione transferase activity	1.13E-02
40	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.44E-02
41	GO:0022857: transmembrane transporter activity	1.77E-02
42	GO:0008026: ATP-dependent helicase activity	1.92E-02
43	GO:0030246: carbohydrate binding	2.07E-02
44	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.20E-02
45	GO:0030170: pyridoxal phosphate binding	2.33E-02
46	GO:0008565: protein transporter activity	2.46E-02
47	GO:0005515: protein binding	3.56E-02
48	GO:0004497: monooxygenase activity	4.32E-02

Rank	GO Term	Adjusted P value
1	GO:0055037: recycling endosome	0.00E+00
2	GO:0043190: ATP-binding cassette (ABC) transporter complex	5.03E-05
3	GO:1990429: peroxisomal importomer complex	5.03E-05
4	GO:0009707: chloroplast outer membrane	6.02E-04
5	GO:0005801: cis-Golgi network	7.68E-04
6	GO:0031359: integral component of chloroplast outer membrane	8.97E-04
7	GO:0009536: plastid	1.58E-03
8	GO:0009706: chloroplast inner membrane	1.80E-03
9	GO:0000419: DNA-directed RNA polymerase V complex	2.69E-03
10	GO:0005769: early endosome	2.69E-03
11	GO:0005802: trans-Golgi network	4.59E-03
12	GO:0005770: late endosome	4.60E-03
13	GO:0005768: endosome	5.40E-03
14	GO:0005778: peroxisomal membrane	6.33E-03
15	GO:0005743: mitochondrial inner membrane	8.03E-03
16	GO:0009507: chloroplast	1.02E-02
17	GO:0009941: chloroplast envelope	1.21E-02
18	GO:0009570: chloroplast stroma	2.00E-02
19	GO:0005774: vacuolar membrane	2.97E-02
20	GO:0005794: Golgi apparatus	3.18E-02
21	GO:0005789: endoplasmic reticulum membrane	4.74E-02