co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G05010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043482: cellular pigment accumulation	0.00E+00
2	GO:0019428: allantoin biosynthetic process	0.00E+00
3	GO:2000786: positive regulation of autophagosome assembly	0.00E+00
4	GO:0090549: response to carbon starvation	0.00E+00
5	GO:0046085: adenosine metabolic process	0.00E+00
6	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
7	GO:0034053: modulation by symbiont of host defense-related programmed cell death	0.00E+00
8	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
9	GO:0045740: positive regulation of DNA replication	0.00E+00
10	GO:0006592: ornithine biosynthetic process	0.00E+00
11	GO:0048870: cell motility	0.00E+00
12	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
13	GO:0071284: cellular response to lead ion	0.00E+00
14	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.96E-08
15	GO:0006511: ubiquitin-dependent protein catabolic process	2.14E-07
16	GO:0048527: lateral root development	1.84E-04
17	GO:0009853: photorespiration	2.15E-04
18	GO:0043407: negative regulation of MAP kinase activity	3.50E-04
19	GO:0031468: nuclear envelope reassembly	3.50E-04
20	GO:0006144: purine nucleobase metabolic process	3.50E-04
21	GO:0001560: regulation of cell growth by extracellular stimulus	3.50E-04
22	GO:2001006: regulation of cellulose biosynthetic process	3.50E-04
23	GO:0019628: urate catabolic process	3.50E-04
24	GO:0009240: isopentenyl diphosphate biosynthetic process	3.50E-04
25	GO:2000025: regulation of leaf formation	3.50E-04
26	GO:0006914: autophagy	6.65E-04
27	GO:0006212: uracil catabolic process	7.62E-04
28	GO:0043255: regulation of carbohydrate biosynthetic process	7.62E-04
29	GO:0019483: beta-alanine biosynthetic process	7.62E-04
30	GO:0030010: establishment of cell polarity	7.62E-04
31	GO:0007163: establishment or maintenance of cell polarity	7.62E-04
32	GO:0006432: phenylalanyl-tRNA aminoacylation	7.62E-04
33	GO:0051252: regulation of RNA metabolic process	7.62E-04
34	GO:0071668: plant-type cell wall assembly	7.62E-04
35	GO:0019441: tryptophan catabolic process to kynurenine	7.62E-04
36	GO:0050992: dimethylallyl diphosphate biosynthetic process	7.62E-04
37	GO:0046686: response to cadmium ion	8.23E-04
38	GO:0006807: nitrogen compound metabolic process	1.14E-03
39	GO:0010498: proteasomal protein catabolic process	1.23E-03
40	GO:0008333: endosome to lysosome transport	1.23E-03
41	GO:0034051: negative regulation of plant-type hypersensitive response	1.23E-03
42	GO:0043617: cellular response to sucrose starvation	1.23E-03
43	GO:0046417: chorismate metabolic process	1.23E-03
44	GO:0015940: pantothenate biosynthetic process	1.23E-03
45	GO:0006760: folic acid-containing compound metabolic process	1.23E-03
46	GO:0090708: specification of plant organ axis polarity	1.23E-03
47	GO:0010043: response to zinc ion	1.39E-03
48	GO:0034599: cellular response to oxidative stress	1.65E-03
49	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.78E-03
50	GO:0010255: glucose mediated signaling pathway	1.78E-03
51	GO:1901332: negative regulation of lateral root development	1.78E-03
52	GO:0006516: glycoprotein catabolic process	1.78E-03
53	GO:0051289: protein homotetramerization	1.78E-03
54	GO:0006487: protein N-linked glycosylation	1.78E-03
55	GO:0006107: oxaloacetate metabolic process	1.78E-03
56	GO:0016226: iron-sulfur cluster assembly	2.36E-03
57	GO:0006221: pyrimidine nucleotide biosynthetic process	2.38E-03
58	GO:0002098: tRNA wobble uridine modification	2.38E-03
59	GO:0006749: glutathione metabolic process	2.38E-03
60	GO:0044205: 'de novo' UMP biosynthetic process	2.38E-03
61	GO:0009755: hormone-mediated signaling pathway	2.38E-03
62	GO:0015976: carbon utilization	2.38E-03
63	GO:0071249: cellular response to nitrate	2.38E-03
64	GO:0006012: galactose metabolic process	2.57E-03
65	GO:0042147: retrograde transport, endosome to Golgi	3.03E-03
66	GO:0030041: actin filament polymerization	3.05E-03
67	GO:0018344: protein geranylgeranylation	3.05E-03
68	GO:0015991: ATP hydrolysis coupled proton transport	3.27E-03
69	GO:0051603: proteolysis involved in cellular protein catabolic process	3.29E-03
70	GO:0006662: glycerol ether metabolic process	3.53E-03
71	GO:0034314: Arp2/3 complex-mediated actin nucleation	3.76E-03
72	GO:0006014: D-ribose metabolic process	3.76E-03
73	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.76E-03
74	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	3.76E-03
75	GO:0006555: methionine metabolic process	3.76E-03
76	GO:0043248: proteasome assembly	3.76E-03
77	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	3.76E-03
78	GO:0015031: protein transport	4.46E-03
79	GO:0000054: ribosomal subunit export from nucleus	4.54E-03
80	GO:0019509: L-methionine salvage from methylthioadenosine	4.54E-03
81	GO:0010090: trichome morphogenesis	4.96E-03
82	GO:0000082: G1/S transition of mitotic cell cycle	5.36E-03
83	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	5.36E-03
84	GO:0007050: cell cycle arrest	5.36E-03
85	GO:0035265: organ growth	6.22E-03
86	GO:0006506: GPI anchor biosynthetic process	6.22E-03
87	GO:0000028: ribosomal small subunit assembly	6.22E-03
88	GO:0045010: actin nucleation	6.22E-03
89	GO:0010928: regulation of auxin mediated signaling pathway	6.22E-03
90	GO:0055114: oxidation-reduction process	6.67E-03
91	GO:0006526: arginine biosynthetic process	7.14E-03
92	GO:0010204: defense response signaling pathway, resistance gene-independent	7.14E-03
93	GO:0043562: cellular response to nitrogen levels	7.14E-03
94	GO:0009808: lignin metabolic process	7.14E-03
95	GO:0010099: regulation of photomorphogenesis	7.14E-03
96	GO:0015996: chlorophyll catabolic process	7.14E-03
97	GO:0009880: embryonic pattern specification	7.14E-03
98	GO:0045454: cell redox homeostasis	7.32E-03
99	GO:0006886: intracellular protein transport	7.68E-03
100	GO:0035556: intracellular signal transduction	7.80E-03
101	GO:0006754: ATP biosynthetic process	8.10E-03
102	GO:0048589: developmental growth	8.10E-03
103	GO:0000902: cell morphogenesis	8.10E-03
104	GO:0010311: lateral root formation	8.66E-03
105	GO:0042761: very long-chain fatty acid biosynthetic process	9.10E-03
106	GO:0006995: cellular response to nitrogen starvation	1.01E-02
107	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.01E-02
108	GO:0000103: sulfate assimilation	1.01E-02
109	GO:0043069: negative regulation of programmed cell death	1.01E-02
110	GO:0045036: protein targeting to chloroplast	1.01E-02
111	GO:0006099: tricarboxylic acid cycle	1.09E-02
112	GO:0009073: aromatic amino acid family biosynthetic process	1.12E-02
113	GO:0030148: sphingolipid biosynthetic process	1.12E-02
114	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.14E-02
115	GO:0010152: pollen maturation	1.24E-02
116	GO:0016925: protein sumoylation	1.24E-02
117	GO:0071365: cellular response to auxin stimulus	1.24E-02
118	GO:0010102: lateral root morphogenesis	1.35E-02
119	GO:0009691: cytokinin biosynthetic process	1.35E-02
120	GO:0006108: malate metabolic process	1.35E-02
121	GO:0006829: zinc II ion transport	1.35E-02
122	GO:0007015: actin filament organization	1.48E-02
123	GO:0007030: Golgi organization	1.60E-02
124	GO:0010039: response to iron ion	1.60E-02
125	GO:0009826: unidimensional cell growth	1.65E-02
126	GO:0042753: positive regulation of circadian rhythm	1.73E-02
127	GO:0034976: response to endoplasmic reticulum stress	1.73E-02
128	GO:0000162: tryptophan biosynthetic process	1.73E-02
129	GO:0006406: mRNA export from nucleus	1.86E-02
130	GO:2000377: regulation of reactive oxygen species metabolic process	1.86E-02
131	GO:0051302: regulation of cell division	2.00E-02
132	GO:0008299: isoprenoid biosynthetic process	2.00E-02
133	GO:0010431: seed maturation	2.13E-02
134	GO:0061077: chaperone-mediated protein folding	2.13E-02
135	GO:0030433: ubiquitin-dependent ERAD pathway	2.28E-02
136	GO:0019748: secondary metabolic process	2.28E-02
137	GO:0009294: DNA mediated transformation	2.42E-02
138	GO:0016192: vesicle-mediated transport	2.42E-02
139	GO:0006979: response to oxidative stress	2.42E-02
140	GO:0016569: covalent chromatin modification	2.45E-02
141	GO:0048443: stamen development	2.57E-02
142	GO:0080022: primary root development	2.88E-02
143	GO:0000413: protein peptidyl-prolyl isomerization	2.88E-02
144	GO:0006606: protein import into nucleus	2.88E-02
145	GO:0000398: mRNA splicing, via spliceosome	3.00E-02
146	GO:0010154: fruit development	3.04E-02
147	GO:0010182: sugar mediated signaling pathway	3.04E-02
148	GO:0015986: ATP synthesis coupled proton transport	3.20E-02
149	GO:0061025: membrane fusion	3.20E-02
150	GO:0009646: response to absence of light	3.20E-02
151	GO:0048825: cotyledon development	3.36E-02
152	GO:0009749: response to glucose	3.36E-02
153	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.53E-02
154	GO:0010193: response to ozone	3.53E-02
155	GO:0048364: root development	3.88E-02
156	GO:0008152: metabolic process	4.15E-02
157	GO:0010286: heat acclimation	4.22E-02
158	GO:0007623: circadian rhythm	4.48E-02
159	GO:0006810: transport	4.51E-02
160	GO:0006906: vesicle fusion	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
2	GO:0050152: omega-amidase activity	0.00E+00
3	GO:0061799: cyclic pyranopterin monophosphate synthase activity	0.00E+00
4	GO:0004151: dihydroorotase activity	0.00E+00
5	GO:0008777: acetylornithine deacetylase activity	0.00E+00
6	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
7	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
8	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
9	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
10	GO:0003837: beta-ureidopropionase activity	0.00E+00
11	GO:0004298: threonine-type endopeptidase activity	6.66E-19
12	GO:0008233: peptidase activity	3.73E-08
13	GO:0008137: NADH dehydrogenase (ubiquinone) activity	5.67E-08
14	GO:0004576: oligosaccharyl transferase activity	7.62E-05
15	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.19E-04
16	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	3.50E-04
17	GO:0004048: anthranilate phosphoribosyltransferase activity	3.50E-04
18	GO:0047560: 3-dehydrosphinganine reductase activity	3.50E-04
19	GO:0019707: protein-cysteine S-acyltransferase activity	3.50E-04
20	GO:0102293: pheophytinase b activity	3.50E-04
21	GO:0030941: chloroplast targeting sequence binding	3.50E-04
22	GO:0033549: MAP kinase phosphatase activity	3.50E-04
23	GO:0004560: alpha-L-fucosidase activity	3.50E-04
24	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	3.50E-04
25	GO:0004034: aldose 1-epimerase activity	3.80E-04
26	GO:0008428: ribonuclease inhibitor activity	7.62E-04
27	GO:1990585: hydroxyproline O-arabinosyltransferase activity	7.62E-04
28	GO:0004106: chorismate mutase activity	7.62E-04
29	GO:0019172: glyoxalase III activity	7.62E-04
30	GO:0004826: phenylalanine-tRNA ligase activity	7.62E-04
31	GO:0004061: arylformamidase activity	7.62E-04
32	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	7.62E-04
33	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	7.62E-04
34	GO:0047746: chlorophyllase activity	7.62E-04
35	GO:0004839: ubiquitin activating enzyme activity	7.62E-04
36	GO:0004129: cytochrome-c oxidase activity	8.86E-04
37	GO:0032403: protein complex binding	1.23E-03
38	GO:0008649: rRNA methyltransferase activity	1.23E-03
39	GO:0004663: Rab geranylgeranyltransferase activity	1.23E-03
40	GO:0008430: selenium binding	1.23E-03
41	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.23E-03
42	GO:0005047: signal recognition particle binding	1.23E-03
43	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.78E-03
44	GO:0051536: iron-sulfur cluster binding	1.78E-03
45	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.38E-03
46	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.38E-03
47	GO:0010011: auxin binding	2.38E-03
48	GO:0047134: protein-disulfide reductase activity	3.03E-03
49	GO:0008948: oxaloacetate decarboxylase activity	3.05E-03
50	GO:0005496: steroid binding	3.05E-03
51	GO:0031386: protein tag	3.05E-03
52	GO:0016407: acetyltransferase activity	3.05E-03
53	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	3.76E-03
54	GO:0051117: ATPase binding	3.76E-03
55	GO:0036402: proteasome-activating ATPase activity	3.76E-03
56	GO:0004791: thioredoxin-disulfide reductase activity	3.79E-03
57	GO:0070300: phosphatidic acid binding	4.54E-03
58	GO:0004747: ribokinase activity	4.54E-03
59	GO:0019887: protein kinase regulator activity	4.54E-03
60	GO:0022857: transmembrane transporter activity	4.57E-03
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.96E-03
62	GO:0015035: protein disulfide oxidoreductase activity	5.12E-03
63	GO:0008143: poly(A) binding	5.36E-03
64	GO:0008320: protein transmembrane transporter activity	5.36E-03
65	GO:0042162: telomeric DNA binding	5.36E-03
66	GO:0035064: methylated histone binding	6.22E-03
67	GO:0015078: hydrogen ion transmembrane transporter activity	7.14E-03
68	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.10E-03
69	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	8.10E-03
70	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	8.10E-03
71	GO:0001055: RNA polymerase II activity	9.10E-03
72	GO:0045309: protein phosphorylated amino acid binding	9.10E-03
73	GO:0047617: acyl-CoA hydrolase activity	9.10E-03
74	GO:0050897: cobalt ion binding	9.53E-03
75	GO:0019904: protein domain specific binding	1.12E-02
76	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.12E-02
77	GO:0008794: arsenate reductase (glutaredoxin) activity	1.12E-02
78	GO:0001054: RNA polymerase I activity	1.12E-02
79	GO:0051539: 4 iron, 4 sulfur cluster binding	1.19E-02
80	GO:0000049: tRNA binding	1.24E-02
81	GO:0001056: RNA polymerase III activity	1.24E-02
82	GO:0004089: carbonate dehydratase activity	1.35E-02
83	GO:0004175: endopeptidase activity	1.48E-02
84	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.58E-02
85	GO:0017025: TBP-class protein binding	1.60E-02
86	GO:0004725: protein tyrosine phosphatase activity	1.73E-02
87	GO:0003714: transcription corepressor activity	1.86E-02
88	GO:0043130: ubiquitin binding	1.86E-02
89	GO:0005528: FK506 binding	1.86E-02
90	GO:0004540: ribonuclease activity	2.13E-02
91	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.23E-02
92	GO:0003756: protein disulfide isomerase activity	2.57E-02
93	GO:0004386: helicase activity	2.84E-02
94	GO:0004402: histone acetyltransferase activity	2.88E-02
95	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.04E-02
96	GO:0046873: metal ion transmembrane transporter activity	3.04E-02
97	GO:0008080: N-acetyltransferase activity	3.04E-02
98	GO:0016853: isomerase activity	3.20E-02
99	GO:0003924: GTPase activity	3.68E-02
100	GO:0016491: oxidoreductase activity	3.78E-02
101	GO:0051015: actin filament binding	3.87E-02
102	GO:0008565: protein transporter activity	3.89E-02
103	GO:0009055: electron carrier activity	4.01E-02
104	GO:0008237: metallopeptidase activity	4.22E-02
105	GO:0016597: amino acid binding	4.40E-02
106	GO:0051213: dioxygenase activity	4.58E-02
107	GO:0008017: microtubule binding	4.69E-02
108	GO:0005525: GTP binding	4.90E-02
109	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
3	GO:0000502: proteasome complex	1.44E-19
4	GO:0005839: proteasome core complex	6.66E-19
5	GO:0019773: proteasome core complex, alpha-subunit complex	5.77E-14
6	GO:0005829: cytosol	2.02E-11
7	GO:0005747: mitochondrial respiratory chain complex I	4.69E-11
8	GO:0045271: respiratory chain complex I	8.04E-06
9	GO:0005774: vacuolar membrane	3.18E-05
10	GO:0008250: oligosaccharyltransferase complex	1.19E-04
11	GO:0005737: cytoplasm	1.58E-04
12	GO:0030904: retromer complex	1.72E-04
13	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	3.50E-04
14	GO:0019774: proteasome core complex, beta-subunit complex	3.50E-04
15	GO:0005662: DNA replication factor A complex	3.50E-04
16	GO:0000421: autophagosome membrane	3.80E-04
17	GO:0045273: respiratory chain complex II	3.80E-04
18	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.80E-04
19	GO:0031966: mitochondrial membrane	4.70E-04
20	GO:0005697: telomerase holoenzyme complex	7.62E-04
21	GO:0005789: endoplasmic reticulum membrane	7.82E-04
22	GO:0005838: proteasome regulatory particle	1.23E-03
23	GO:0005853: eukaryotic translation elongation factor 1 complex	1.23E-03
24	GO:0005773: vacuole	1.39E-03
25	GO:0005759: mitochondrial matrix	1.78E-03
26	GO:0005758: mitochondrial intermembrane space	1.78E-03
27	GO:0005719: nuclear euchromatin	1.78E-03
28	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.78E-03
29	GO:0005956: protein kinase CK2 complex	1.78E-03
30	GO:0033588: Elongator holoenzyme complex	1.78E-03
31	GO:0031410: cytoplasmic vesicle	2.36E-03
32	GO:0033179: proton-transporting V-type ATPase, V0 domain	2.38E-03
33	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	2.38E-03
34	GO:0005746: mitochondrial respiratory chain	3.05E-03
35	GO:0005783: endoplasmic reticulum	3.26E-03
36	GO:0031209: SCAR complex	3.76E-03
37	GO:0000974: Prp19 complex	3.76E-03
38	GO:0005771: multivesicular body	3.76E-03
39	GO:0032588: trans-Golgi network membrane	3.76E-03
40	GO:0005801: cis-Golgi network	4.54E-03
41	GO:0031597: cytosolic proteasome complex	4.54E-03
42	GO:0005885: Arp2/3 protein complex	4.54E-03
43	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	5.36E-03
44	GO:0031359: integral component of chloroplast outer membrane	5.36E-03
45	GO:0031595: nuclear proteasome complex	5.36E-03
46	GO:0022626: cytosolic ribosome	6.57E-03
47	GO:0005794: Golgi apparatus	7.03E-03
48	GO:0031901: early endosome membrane	8.10E-03
49	GO:0005763: mitochondrial small ribosomal subunit	8.10E-03
50	GO:0005736: DNA-directed RNA polymerase I complex	8.10E-03
51	GO:0008540: proteasome regulatory particle, base subcomplex	9.10E-03
52	GO:0005666: DNA-directed RNA polymerase III complex	9.10E-03
53	GO:0071011: precatalytic spliceosome	9.10E-03
54	GO:0005765: lysosomal membrane	1.12E-02
55	GO:0008541: proteasome regulatory particle, lid subcomplex	1.12E-02
56	GO:0071013: catalytic step 2 spliceosome	1.12E-02
57	GO:0005665: DNA-directed RNA polymerase II, core complex	1.24E-02
58	GO:0031902: late endosome membrane	1.24E-02
59	GO:0009508: plastid chromosome	1.35E-02
60	GO:0005856: cytoskeleton	1.52E-02
61	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.60E-02
62	GO:0000419: DNA-directed RNA polymerase V complex	1.73E-02
63	GO:0070469: respiratory chain	2.00E-02
64	GO:0005730: nucleolus	2.23E-02
65	GO:0016607: nuclear speck	2.23E-02
66	GO:0009507: chloroplast	2.68E-02
67	GO:0005739: mitochondrion	2.84E-02
68	GO:0005732: small nucleolar ribonucleoprotein complex	2.84E-02
69	GO:0005623: cell	3.34E-02
70	GO:0071944: cell periphery	3.87E-02
71	GO:0032580: Golgi cisterna membrane	4.04E-02
72	GO:0009295: nucleoid	4.22E-02
73	GO:0005778: peroxisomal membrane	4.22E-02