Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G04920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
2GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
3GO:0090239: regulation of histone H4 acetylation0.00E+00
4GO:0000740: nuclear membrane fusion0.00E+00
5GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
6GO:0044843: cell cycle G1/S phase transition0.00E+00
7GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
8GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
9GO:1904874: positive regulation of telomerase RNA localization to Cajal body0.00E+00
10GO:0007530: sex determination0.00E+00
11GO:0070918: production of small RNA involved in gene silencing by RNA0.00E+00
12GO:0006412: translation1.24E-172
13GO:0042254: ribosome biogenesis2.60E-74
14GO:0000027: ribosomal large subunit assembly1.40E-11
15GO:0000028: ribosomal small subunit assembly1.16E-08
16GO:0006626: protein targeting to mitochondrion4.10E-07
17GO:0000398: mRNA splicing, via spliceosome2.78E-06
18GO:0000387: spliceosomal snRNP assembly3.93E-06
19GO:0009955: adaxial/abaxial pattern specification2.08E-05
20GO:0002181: cytoplasmic translation5.52E-05
21GO:1902626: assembly of large subunit precursor of preribosome5.52E-05
22GO:0006414: translational elongation1.12E-04
23GO:0006820: anion transport2.21E-04
24GO:0009735: response to cytokinin3.11E-04
25GO:0045040: protein import into mitochondrial outer membrane4.18E-04
26GO:1990258: histone glutamine methylation6.22E-04
27GO:0031120: snRNA pseudouridine synthesis6.22E-04
28GO:0006475: internal protein amino acid acetylation6.22E-04
29GO:0031118: rRNA pseudouridine synthesis6.22E-04
30GO:0015801: aromatic amino acid transport6.22E-04
31GO:0017198: N-terminal peptidyl-serine acetylation6.22E-04
32GO:0030490: maturation of SSU-rRNA6.22E-04
33GO:2001006: regulation of cellulose biosynthetic process6.22E-04
34GO:0000494: box C/D snoRNA 3'-end processing6.22E-04
35GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.22E-04
36GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.22E-04
37GO:0018002: N-terminal peptidyl-glutamic acid acetylation6.22E-04
38GO:0006407: rRNA export from nucleus6.22E-04
39GO:0009651: response to salt stress1.01E-03
40GO:0098656: anion transmembrane transport1.28E-03
41GO:0009245: lipid A biosynthetic process1.28E-03
42GO:0045905: positive regulation of translational termination1.34E-03
43GO:0071668: plant-type cell wall assembly1.34E-03
44GO:0045901: positive regulation of translational elongation1.34E-03
45GO:0045041: protein import into mitochondrial intermembrane space1.34E-03
46GO:0048569: post-embryonic animal organ development1.34E-03
47GO:0043981: histone H4-K5 acetylation1.34E-03
48GO:0006452: translational frameshifting1.34E-03
49GO:0010198: synergid death1.34E-03
50GO:0015786: UDP-glucose transport1.34E-03
51GO:0009793: embryo development ending in seed dormancy1.65E-03
52GO:1904278: positive regulation of wax biosynthetic process2.20E-03
53GO:0009150: purine ribonucleotide metabolic process2.20E-03
54GO:0045793: positive regulation of cell size2.20E-03
55GO:0015783: GDP-fucose transport2.20E-03
56GO:0034227: tRNA thio-modification2.20E-03
57GO:0042256: mature ribosome assembly2.20E-03
58GO:0090506: axillary shoot meristem initiation2.20E-03
59GO:0010452: histone H3-K36 methylation2.20E-03
60GO:0006446: regulation of translational initiation3.03E-03
61GO:0006168: adenine salvage3.20E-03
62GO:0009558: embryo sac cellularization3.20E-03
63GO:0032877: positive regulation of DNA endoreduplication3.20E-03
64GO:0007004: telomere maintenance via telomerase3.20E-03
65GO:0006166: purine ribonucleoside salvage3.20E-03
66GO:0070301: cellular response to hydrogen peroxide3.20E-03
67GO:0051085: chaperone mediated protein folding requiring cofactor3.20E-03
68GO:0006241: CTP biosynthetic process3.20E-03
69GO:0072334: UDP-galactose transmembrane transport3.20E-03
70GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.20E-03
71GO:0006165: nucleoside diphosphate phosphorylation3.20E-03
72GO:0006228: UTP biosynthetic process3.20E-03
73GO:0006164: purine nucleotide biosynthetic process3.20E-03
74GO:0006289: nucleotide-excision repair4.21E-03
75GO:0009116: nucleoside metabolic process4.21E-03
76GO:0030150: protein import into mitochondrial matrix4.21E-03
77GO:2000032: regulation of secondary shoot formation4.32E-03
78GO:0009165: nucleotide biosynthetic process4.32E-03
79GO:0051781: positive regulation of cell division4.32E-03
80GO:0042274: ribosomal small subunit biogenesis4.32E-03
81GO:0006183: GTP biosynthetic process4.32E-03
82GO:0010363: regulation of plant-type hypersensitive response4.32E-03
83GO:1902183: regulation of shoot apical meristem development5.55E-03
84GO:0044209: AMP salvage5.55E-03
85GO:0031167: rRNA methylation5.55E-03
86GO:0001731: formation of translation preinitiation complex6.88E-03
87GO:0016070: RNA metabolic process6.88E-03
88GO:0051568: histone H3-K4 methylation6.88E-03
89GO:0000470: maturation of LSU-rRNA6.88E-03
90GO:0043248: proteasome assembly6.88E-03
91GO:0006413: translational initiation7.00E-03
92GO:0009965: leaf morphogenesis7.57E-03
93GO:0000413: protein peptidyl-prolyl isomerization7.82E-03
94GO:0006458: 'de novo' protein folding8.32E-03
95GO:0000245: spliceosomal complex assembly8.32E-03
96GO:0000911: cytokinesis by cell plate formation8.32E-03
97GO:0042026: protein refolding8.32E-03
98GO:0010197: polar nucleus fusion8.43E-03
99GO:0006364: rRNA processing9.56E-03
100GO:0032880: regulation of protein localization9.86E-03
101GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c9.86E-03
102GO:0051603: proteolysis involved in cellular protein catabolic process1.00E-02
103GO:0009690: cytokinin metabolic process1.15E-02
104GO:0001522: pseudouridine synthesis1.15E-02
105GO:0006526: arginine biosynthetic process1.32E-02
106GO:0044030: regulation of DNA methylation1.32E-02
107GO:0009808: lignin metabolic process1.32E-02
108GO:0001558: regulation of cell growth1.32E-02
109GO:0001510: RNA methylation1.32E-02
110GO:0006189: 'de novo' IMP biosynthetic process1.50E-02
111GO:0048589: developmental growth1.50E-02
112GO:0009060: aerobic respiration1.50E-02
113GO:0015780: nucleotide-sugar transport1.50E-02
114GO:0016441: posttranscriptional gene silencing1.89E-02
115GO:0010015: root morphogenesis2.10E-02
116GO:0006913: nucleocytoplasmic transport2.10E-02
117GO:0015770: sucrose transport2.10E-02
118GO:0016925: protein sumoylation2.31E-02
119GO:0006790: sulfur compound metabolic process2.31E-02
120GO:0010628: positive regulation of gene expression2.53E-02
121GO:2000028: regulation of photoperiodism, flowering2.53E-02
122GO:0010102: lateral root morphogenesis2.53E-02
123GO:0048467: gynoecium development2.76E-02
124GO:0015031: protein transport2.86E-02
125GO:0009409: response to cold3.25E-02
126GO:0008283: cell proliferation3.25E-02
127GO:0006406: mRNA export from nucleus3.48E-02
128GO:0006487: protein N-linked glycosylation3.48E-02
129GO:0009644: response to high light intensity3.52E-02
130GO:0051302: regulation of cell division3.73E-02
131GO:0003333: amino acid transmembrane transport3.99E-02
132GO:0051260: protein homooligomerization3.99E-02
133GO:0010431: seed maturation3.99E-02
134GO:0061077: chaperone-mediated protein folding3.99E-02
135GO:0006306: DNA methylation3.99E-02
136GO:0007005: mitochondrion organization4.26E-02
137GO:0016226: iron-sulfur cluster assembly4.26E-02
138GO:0046686: response to cadmium ion4.30E-02
139GO:0040007: growth4.53E-02
140GO:0010089: xylem development4.80E-02
141GO:0010584: pollen exine formation4.80E-02
142GO:0019722: calcium-mediated signaling4.80E-02
RankGO TermAdjusted P value
1GO:0004055: argininosuccinate synthase activity0.00E+00
2GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
3GO:0034513: box H/ACA snoRNA binding0.00E+00
4GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
5GO:0003735: structural constituent of ribosome1.77E-219
6GO:0003729: mRNA binding1.44E-38
7GO:0019843: rRNA binding1.30E-17
8GO:0015288: porin activity4.72E-05
9GO:0008308: voltage-gated anion channel activity6.58E-05
10GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity7.68E-05
11GO:0003723: RNA binding8.86E-05
12GO:0001055: RNA polymerase II activity1.15E-04
13GO:0008097: 5S rRNA binding1.16E-04
14GO:0003746: translation elongation factor activity1.28E-04
15GO:0001054: RNA polymerase I activity1.81E-04
16GO:0001056: RNA polymerase III activity2.21E-04
17GO:0031177: phosphopantetheine binding4.18E-04
18GO:0000035: acyl binding5.54E-04
19GO:0005080: protein kinase C binding6.22E-04
20GO:1990259: histone-glutamine methyltransferase activity6.22E-04
21GO:0035614: snRNA stem-loop binding6.22E-04
22GO:1990189: peptide-serine-N-acetyltransferase activity6.22E-04
23GO:1990190: peptide-glutamate-N-acetyltransferase activity6.22E-04
24GO:0004298: threonine-type endopeptidase activity6.27E-04
25GO:0030515: snoRNA binding7.10E-04
26GO:0043022: ribosome binding8.83E-04
27GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process8.83E-04
28GO:0030619: U1 snRNA binding1.34E-03
29GO:0015173: aromatic amino acid transmembrane transporter activity1.34E-03
30GO:0070034: telomerase RNA binding1.34E-03
31GO:0004750: ribulose-phosphate 3-epimerase activity1.34E-03
32GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.96E-03
33GO:0044183: protein binding involved in protein folding2.05E-03
34GO:0008649: rRNA methyltransferase activity2.20E-03
35GO:0005457: GDP-fucose transmembrane transporter activity2.20E-03
36GO:0070180: large ribosomal subunit rRNA binding2.20E-03
37GO:0070181: small ribosomal subunit rRNA binding2.20E-03
38GO:0015266: protein channel activity2.68E-03
39GO:0005460: UDP-glucose transmembrane transporter activity3.20E-03
40GO:0004550: nucleoside diphosphate kinase activity3.20E-03
41GO:0047627: adenylylsulfatase activity3.20E-03
42GO:0004749: ribose phosphate diphosphokinase activity3.20E-03
43GO:0003999: adenine phosphoribosyltransferase activity3.20E-03
44GO:0004576: oligosaccharyl transferase activity4.32E-03
45GO:0010011: auxin binding4.32E-03
46GO:0070628: proteasome binding4.32E-03
47GO:0005275: amine transmembrane transporter activity5.55E-03
48GO:0031386: protein tag5.55E-03
49GO:0005459: UDP-galactose transmembrane transporter activity5.55E-03
50GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity5.55E-03
51GO:0031593: polyubiquitin binding6.88E-03
52GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity6.88E-03
53GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.95E-03
54GO:0051920: peroxiredoxin activity8.32E-03
55GO:0005338: nucleotide-sugar transmembrane transporter activity9.86E-03
56GO:0008235: metalloexopeptidase activity9.86E-03
57GO:0042162: telomeric DNA binding9.86E-03
58GO:0008121: ubiquinol-cytochrome-c reductase activity9.86E-03
59GO:0003743: translation initiation factor activity9.88E-03
60GO:0016209: antioxidant activity1.15E-02
61GO:0051082: unfolded protein binding1.50E-02
62GO:0004129: cytochrome-c oxidase activity2.10E-02
63GO:0008515: sucrose transmembrane transporter activity2.10E-02
64GO:0008794: arsenate reductase (glutaredoxin) activity2.10E-02
65GO:0031072: heat shock protein binding2.53E-02
66GO:0051119: sugar transmembrane transporter activity2.99E-02
67GO:0043130: ubiquitin binding3.48E-02
68GO:0008514: organic anion transmembrane transporter activity4.80E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0005675: holo TFIIH complex0.00E+00
3GO:0090661: box H/ACA telomerase RNP complex0.00E+00
4GO:0097361: CIA complex0.00E+00
5GO:0072589: box H/ACA scaRNP complex0.00E+00
6GO:0005840: ribosome2.90E-152
7GO:0022626: cytosolic ribosome1.38E-132
8GO:0022625: cytosolic large ribosomal subunit5.26E-130
9GO:0022627: cytosolic small ribosomal subunit2.67E-87
10GO:0005829: cytosol2.14E-44
11GO:0005737: cytoplasm9.42E-44
12GO:0005730: nucleolus2.16E-42
13GO:0009506: plasmodesma1.03E-24
14GO:0015934: large ribosomal subunit8.48E-21
15GO:0005774: vacuolar membrane5.67E-15
16GO:0015935: small ribosomal subunit5.75E-13
17GO:0016020: membrane2.91E-11
18GO:0005773: vacuole5.60E-09
19GO:0005732: small nucleolar ribonucleoprotein complex1.15E-08
20GO:0005618: cell wall1.90E-07
21GO:0000419: DNA-directed RNA polymerase V complex1.13E-06
22GO:0005742: mitochondrial outer membrane translocase complex1.65E-06
23GO:0009507: chloroplast2.54E-06
24GO:0005665: DNA-directed RNA polymerase II, core complex1.09E-05
25GO:0019013: viral nucleocapsid1.45E-05
26GO:0034719: SMN-Sm protein complex5.52E-05
27GO:0005853: eukaryotic translation elongation factor 1 complex5.52E-05
28GO:0005741: mitochondrial outer membrane5.59E-05
29GO:0000502: proteasome complex5.66E-05
30GO:0046930: pore complex6.58E-05
31GO:0005681: spliceosomal complex8.66E-05
32GO:0005736: DNA-directed RNA polymerase I complex8.82E-05
33GO:0005685: U1 snRNP8.82E-05
34GO:0005666: DNA-directed RNA polymerase III complex1.15E-04
35GO:0071011: precatalytic spliceosome1.15E-04
36GO:0015030: Cajal body1.15E-04
37GO:0071013: catalytic step 2 spliceosome1.81E-04
38GO:0005682: U5 snRNP1.98E-04
39GO:0005687: U4 snRNP2.99E-04
40GO:0097526: spliceosomal tri-snRNP complex2.99E-04
41GO:0005886: plasma membrane3.99E-04
42GO:0005689: U12-type spliceosomal complex5.54E-04
43GO:0030686: 90S preribosome6.22E-04
44GO:0005839: proteasome core complex6.27E-04
45GO:0005688: U6 snRNP8.83E-04
46GO:0046540: U4/U6 x U5 tri-snRNP complex1.07E-03
47GO:0005697: telomerase holoenzyme complex1.34E-03
48GO:0071010: prespliceosome1.34E-03
49GO:0035145: exon-exon junction complex1.34E-03
50GO:0031415: NatA complex1.34E-03
51GO:0005686: U2 snRNP1.77E-03
52GO:0000418: DNA-directed RNA polymerase IV complex1.77E-03
53GO:0000439: core TFIIH complex2.20E-03
54GO:0034715: pICln-Sm protein complex2.20E-03
55GO:1990726: Lsm1-7-Pat1 complex3.20E-03
56GO:0031429: box H/ACA snoRNP complex3.20E-03
57GO:0005758: mitochondrial intermembrane space4.21E-03
58GO:0016593: Cdc73/Paf1 complex4.32E-03
59GO:0070469: respiratory chain4.65E-03
60GO:0005746: mitochondrial respiratory chain5.55E-03
61GO:0008250: oligosaccharyltransferase complex5.55E-03
62GO:0000243: commitment complex6.88E-03
63GO:0016282: eukaryotic 43S preinitiation complex6.88E-03
64GO:0031428: box C/D snoRNP complex6.88E-03
65GO:0005762: mitochondrial large ribosomal subunit8.32E-03
66GO:0033290: eukaryotic 48S preinitiation complex8.32E-03
67GO:0016272: prefoldin complex8.32E-03
68GO:0071004: U2-type prespliceosome1.15E-02
69GO:0045273: respiratory chain complex II1.15E-02
70GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.15E-02
71GO:0030529: intracellular ribonucleoprotein complex1.52E-02
72GO:0016604: nuclear body1.69E-02
73GO:0005654: nucleoplasm1.93E-02
74GO:0048471: perinuclear region of cytoplasm2.10E-02
75GO:0005852: eukaryotic translation initiation factor 3 complex2.10E-02
76GO:0008541: proteasome regulatory particle, lid subcomplex2.10E-02
77GO:0031307: integral component of mitochondrial outer membrane2.31E-02
78GO:0032040: small-subunit processome2.31E-02
79GO:0009508: plastid chromosome2.53E-02
80GO:0005750: mitochondrial respiratory chain complex III2.76E-02
81GO:0005743: mitochondrial inner membrane3.33E-02
82GO:0005622: intracellular3.37E-02
83GO:0005744: mitochondrial inner membrane presequence translocase complex4.80E-02
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Gene type



Gene DE type