co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009661: chromoplast organization	0.00E+00
2	GO:0019878: lysine biosynthetic process via aminoadipic acid	0.00E+00
3	GO:0018215: protein phosphopantetheinylation	0.00E+00
4	GO:0015798: myo-inositol transport	3.12E-05
5	GO:0071461: cellular response to redox state	3.12E-05
6	GO:0006430: lysyl-tRNA aminoacylation	3.12E-05
7	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	3.12E-05
8	GO:0080005: photosystem stoichiometry adjustment	7.88E-05
9	GO:0019388: galactose catabolic process	7.88E-05
10	GO:1904143: positive regulation of carotenoid biosynthetic process	7.88E-05
11	GO:0043100: pyrimidine nucleobase salvage	7.88E-05
12	GO:0019252: starch biosynthetic process	1.60E-04
13	GO:0009590: detection of gravity	2.04E-04
14	GO:2001141: regulation of RNA biosynthetic process	2.04E-04
15	GO:0010021: amylopectin biosynthetic process	2.76E-04
16	GO:0070534: protein K63-linked ubiquitination	2.76E-04
17	GO:0016120: carotene biosynthetic process	3.53E-04
18	GO:0010190: cytochrome b6f complex assembly	4.34E-04
19	GO:0006301: postreplication repair	4.34E-04
20	GO:0050790: regulation of catalytic activity	6.07E-04
21	GO:0050821: protein stabilization	6.99E-04
22	GO:0009231: riboflavin biosynthetic process	6.99E-04
23	GO:0006102: isocitrate metabolic process	6.99E-04
24	GO:0005978: glycogen biosynthetic process	6.99E-04
25	GO:0071482: cellular response to light stimulus	7.94E-04
26	GO:0055062: phosphate ion homeostasis	1.10E-03
27	GO:0045036: protein targeting to chloroplast	1.10E-03
28	GO:0006352: DNA-templated transcription, initiation	1.20E-03
29	GO:0048229: gametophyte development	1.20E-03
30	GO:0006006: glucose metabolic process	1.43E-03
31	GO:0050826: response to freezing	1.43E-03
32	GO:0006418: tRNA aminoacylation for protein translation	2.05E-03
33	GO:0006662: glycerol ether metabolic process	3.05E-03
34	GO:0009741: response to brassinosteroid	3.05E-03
35	GO:1901657: glycosyl compound metabolic process	3.84E-03
36	GO:0016126: sterol biosynthetic process	4.52E-03
37	GO:0042128: nitrate assimilation	4.87E-03
38	GO:0010411: xyloglucan metabolic process	5.05E-03
39	GO:0015995: chlorophyll biosynthetic process	5.05E-03
40	GO:0016311: dephosphorylation	5.23E-03
41	GO:0048481: plant ovule development	5.42E-03
42	GO:0007568: aging	5.99E-03
43	GO:0034599: cellular response to oxidative stress	6.58E-03
44	GO:0006099: tricarboxylic acid cycle	6.58E-03
45	GO:0055114: oxidation-reduction process	9.15E-03
46	GO:0009809: lignin biosynthetic process	9.36E-03
47	GO:0051603: proteolysis involved in cellular protein catabolic process	9.59E-03
48	GO:0006857: oligopeptide transport	9.82E-03
49	GO:0055085: transmembrane transport	1.06E-02
50	GO:0006508: proteolysis	1.18E-02
51	GO:0042744: hydrogen peroxide catabolic process	1.54E-02
52	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.91E-02
53	GO:0005975: carbohydrate metabolic process	2.57E-02
54	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.88E-02
55	GO:0045454: cell redox homeostasis	3.19E-02
56	GO:0006468: protein phosphorylation	3.75E-02

Rank	GO Term	Adjusted P value
1	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
2	GO:0008897: holo-[acyl-carrier-protein] synthase activity	0.00E+00
3	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
4	GO:0016783: sulfurtransferase activity	3.12E-05
5	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	3.12E-05
6	GO:0046480: galactolipid galactosyltransferase activity	3.12E-05
7	GO:0080079: cellobiose glucosidase activity	3.12E-05
8	GO:0004824: lysine-tRNA ligase activity	3.12E-05
9	GO:0004614: phosphoglucomutase activity	7.88E-05
10	GO:0004450: isocitrate dehydrogenase (NADP+) activity	7.88E-05
11	GO:0005366: myo-inositol:proton symporter activity	7.88E-05
12	GO:0016868: intramolecular transferase activity, phosphotransferases	7.88E-05
13	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	7.88E-05
14	GO:0033201: alpha-1,4-glucan synthase activity	7.88E-05
15	GO:0008967: phosphoglycolate phosphatase activity	7.88E-05
16	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.37E-04
17	GO:0004373: glycogen (starch) synthase activity	1.37E-04
18	GO:0004557: alpha-galactosidase activity	1.37E-04
19	GO:0003935: GTP cyclohydrolase II activity	1.37E-04
20	GO:0004792: thiosulfate sulfurtransferase activity	2.04E-04
21	GO:0000254: C-4 methylsterol oxidase activity	2.04E-04
22	GO:0008106: alcohol dehydrogenase (NADP+) activity	2.04E-04
23	GO:0000287: magnesium ion binding	2.59E-04
24	GO:0009011: starch synthase activity	2.76E-04
25	GO:0001053: plastid sigma factor activity	2.76E-04
26	GO:0016987: sigma factor activity	2.76E-04
27	GO:0016621: cinnamoyl-CoA reductase activity	6.07E-04
28	GO:0008378: galactosyltransferase activity	1.31E-03
29	GO:0004176: ATP-dependent peptidase activity	2.19E-03
30	GO:0047134: protein-disulfide reductase activity	2.75E-03
31	GO:0004812: aminoacyl-tRNA ligase activity	2.75E-03
32	GO:0050662: coenzyme binding	3.20E-03
33	GO:0004791: thioredoxin-disulfide reductase activity	3.20E-03
34	GO:0061630: ubiquitin protein ligase activity	3.36E-03
35	GO:0004197: cysteine-type endopeptidase activity	3.68E-03
36	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.84E-03
37	GO:0016791: phosphatase activity	4.00E-03
38	GO:0008237: metallopeptidase activity	4.17E-03
39	GO:0016413: O-acetyltransferase activity	4.34E-03
40	GO:0004222: metalloendopeptidase activity	5.79E-03
41	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.38E-03
42	GO:0003993: acid phosphatase activity	6.58E-03
43	GO:0008422: beta-glucosidase activity	6.77E-03
44	GO:0016887: ATPase activity	7.27E-03
45	GO:0051537: 2 iron, 2 sulfur cluster binding	8.03E-03
46	GO:0015293: symporter activity	8.24E-03
47	GO:0051287: NAD binding	8.68E-03
48	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.36E-03
49	GO:0008234: cysteine-type peptidase activity	1.01E-02
50	GO:0031625: ubiquitin protein ligase binding	1.01E-02
51	GO:0051082: unfolded protein binding	1.20E-02
52	GO:0015035: protein disulfide oxidoreductase activity	1.22E-02
53	GO:0015144: carbohydrate transmembrane transporter activity	1.60E-02
54	GO:0005351: sugar:proton symporter activity	1.74E-02
55	GO:0004674: protein serine/threonine kinase activity	2.14E-02
56	GO:0016491: oxidoreductase activity	2.23E-02
57	GO:0004601: peroxidase activity	2.41E-02
58	GO:0004672: protein kinase activity	2.49E-02
59	GO:0008233: peptidase activity	2.77E-02
60	GO:0004722: protein serine/threonine phosphatase activity	3.41E-02
61	GO:0046872: metal ion binding	3.67E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.08E-05
2	GO:0009526: plastid envelope	2.76E-04
3	GO:0031372: UBC13-MMS2 complex	2.76E-04
4	GO:0031969: chloroplast membrane	3.52E-04
5	GO:0031359: integral component of chloroplast outer membrane	6.07E-04
6	GO:0009501: amyloplast	6.99E-04
7	GO:0009535: chloroplast thylakoid membrane	1.54E-03
8	GO:0005759: mitochondrial matrix	1.54E-03
9	GO:0005764: lysosome	1.55E-03
10	GO:0010319: stromule	4.17E-03
11	GO:0009707: chloroplast outer membrane	5.42E-03
12	GO:0016021: integral component of membrane	7.05E-03
13	GO:0031977: thylakoid lumen	7.19E-03
14	GO:0005747: mitochondrial respiratory chain complex I	1.08E-02
15	GO:0009706: chloroplast inner membrane	1.20E-02
16	GO:0009543: chloroplast thylakoid lumen	1.41E-02
17	GO:0009705: plant-type vacuole membrane	1.77E-02
18	GO:0005615: extracellular space	1.91E-02
19	GO:0009941: chloroplast envelope	2.02E-02
20	GO:0009536: plastid	2.08E-02
21	GO:0005773: vacuole	2.35E-02
22	GO:0005829: cytosol	3.17E-02
23	GO:0005887: integral component of plasma membrane	4.61E-02