GO Enrichment Analysis of Co-expressed Genes with
AT3G04820
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 2 | GO:0007005: mitochondrion organization | 3.27E-05 |
| 3 | GO:0045859: regulation of protein kinase activity | 4.12E-05 |
| 4 | GO:0080009: mRNA methylation | 4.12E-05 |
| 5 | GO:0070475: rRNA base methylation | 7.34E-05 |
| 6 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 1.11E-04 |
| 7 | GO:0016554: cytidine to uridine editing | 2.47E-04 |
| 8 | GO:0006458: 'de novo' protein folding | 2.97E-04 |
| 9 | GO:0006364: rRNA processing | 3.13E-04 |
| 10 | GO:0009553: embryo sac development | 4.31E-04 |
| 11 | GO:0043562: cellular response to nitrogen levels | 4.60E-04 |
| 12 | GO:0006002: fructose 6-phosphate metabolic process | 4.60E-04 |
| 13 | GO:0006189: 'de novo' IMP biosynthetic process | 5.18E-04 |
| 14 | GO:0006259: DNA metabolic process | 6.38E-04 |
| 15 | GO:0010162: seed dormancy process | 6.38E-04 |
| 16 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.10E-03 |
| 17 | GO:0000027: ribosomal large subunit assembly | 1.10E-03 |
| 18 | GO:0061077: chaperone-mediated protein folding | 1.25E-03 |
| 19 | GO:0009294: DNA mediated transformation | 1.40E-03 |
| 20 | GO:0008033: tRNA processing | 1.65E-03 |
| 21 | GO:0080156: mitochondrial mRNA modification | 1.99E-03 |
| 22 | GO:0042128: nitrate assimilation | 2.74E-03 |
| 23 | GO:0016049: cell growth | 2.94E-03 |
| 24 | GO:0048527: lateral root development | 3.36E-03 |
| 25 | GO:0009744: response to sucrose | 4.25E-03 |
| 26 | GO:0000154: rRNA modification | 4.60E-03 |
| 27 | GO:0006096: glycolytic process | 5.85E-03 |
| 28 | GO:0006396: RNA processing | 6.78E-03 |
| 29 | GO:0000398: mRNA splicing, via spliceosome | 7.34E-03 |
| 30 | GO:0006633: fatty acid biosynthetic process | 9.10E-03 |
| 31 | GO:0009451: RNA modification | 9.89E-03 |
| 32 | GO:0046686: response to cadmium ion | 1.12E-02 |
| 33 | GO:0009723: response to ethylene | 1.47E-02 |
| 34 | GO:0009793: embryo development ending in seed dormancy | 1.67E-02 |
| 35 | GO:0015979: photosynthesis | 1.69E-02 |
| 36 | GO:0045892: negative regulation of transcription, DNA-templated | 1.77E-02 |
| 37 | GO:0009735: response to cytokinin | 2.87E-02 |
| 38 | GO:0009555: pollen development | 3.06E-02 |
| 39 | GO:0051301: cell division | 3.25E-02 |
| 40 | GO:0006414: translational elongation | 4.07E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030515: snoRNA binding | 2.22E-06 |
| 2 | GO:0042134: rRNA primary transcript binding | 1.57E-05 |
| 3 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 1.57E-05 |
| 4 | GO:0004679: AMP-activated protein kinase activity | 1.57E-05 |
| 5 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.57E-05 |
| 6 | GO:0000166: nucleotide binding | 2.89E-05 |
| 7 | GO:0070361: mitochondrial light strand promoter anti-sense binding | 4.12E-05 |
| 8 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 7.34E-05 |
| 9 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.30E-04 |
| 10 | GO:0050897: cobalt ion binding | 1.60E-04 |
| 11 | GO:0003746: translation elongation factor activity | 1.77E-04 |
| 12 | GO:0004040: amidase activity | 1.98E-04 |
| 13 | GO:0019887: protein kinase regulator activity | 2.97E-04 |
| 14 | GO:0003872: 6-phosphofructokinase activity | 3.49E-04 |
| 15 | GO:0008173: RNA methyltransferase activity | 4.60E-04 |
| 16 | GO:0003678: DNA helicase activity | 5.18E-04 |
| 17 | GO:0044183: protein binding involved in protein folding | 7.00E-04 |
| 18 | GO:0004407: histone deacetylase activity | 1.10E-03 |
| 19 | GO:0004176: ATP-dependent peptidase activity | 1.25E-03 |
| 20 | GO:0010181: FMN binding | 1.82E-03 |
| 21 | GO:0003723: RNA binding | 2.71E-03 |
| 22 | GO:0004004: ATP-dependent RNA helicase activity | 2.84E-03 |
| 23 | GO:0008236: serine-type peptidase activity | 2.94E-03 |
| 24 | GO:0005524: ATP binding | 3.52E-03 |
| 25 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.91E-03 |
| 26 | GO:0005525: GTP binding | 5.84E-03 |
| 27 | GO:0051082: unfolded protein binding | 6.64E-03 |
| 28 | GO:0016829: lyase activity | 8.21E-03 |
| 29 | GO:0004252: serine-type endopeptidase activity | 8.35E-03 |
| 30 | GO:0003924: GTPase activity | 2.03E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0036396: MIS complex | 0.00E+00 |
| 3 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 4 | GO:0032040: small-subunit processome | 4.76E-08 |
| 5 | GO:0005730: nucleolus | 5.01E-08 |
| 6 | GO:0005618: cell wall | 1.50E-05 |
| 7 | GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex | 1.57E-05 |
| 8 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 9.03E-05 |
| 9 | GO:0031428: box C/D snoRNP complex | 2.47E-04 |
| 10 | GO:0016363: nuclear matrix | 2.97E-04 |
| 11 | GO:0031359: integral component of chloroplast outer membrane | 3.49E-04 |
| 12 | GO:0005747: mitochondrial respiratory chain complex I | 3.82E-04 |
| 13 | GO:0015030: Cajal body | 5.76E-04 |
| 14 | GO:0019013: viral nucleocapsid | 8.30E-04 |
| 15 | GO:0005739: mitochondrion | 2.43E-03 |
| 16 | GO:0005774: vacuolar membrane | 4.58E-03 |
| 17 | GO:0005681: spliceosomal complex | 5.85E-03 |
| 18 | GO:0016607: nuclear speck | 5.98E-03 |
| 19 | GO:0005834: heterotrimeric G-protein complex | 6.11E-03 |
| 20 | GO:0005732: small nucleolar ribonucleoprotein complex | 7.06E-03 |
| 21 | GO:0005840: ribosome | 7.53E-03 |
| 22 | GO:0009536: plastid | 8.81E-03 |
| 23 | GO:0005759: mitochondrial matrix | 9.10E-03 |
| 24 | GO:0046658: anchored component of plasma membrane | 1.18E-02 |
| 25 | GO:0005829: cytosol | 1.84E-02 |
| 26 | GO:0005773: vacuole | 3.83E-02 |
| 27 | GO:0005802: trans-Golgi network | 4.28E-02 |
| 28 | GO:0005622: intracellular | 4.61E-02 |
| 29 | GO:0005768: endosome | 4.69E-02 |