GO Enrichment Analysis of Co-expressed Genes with
AT3G04770
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070476: rRNA (guanine-N7)-methylation | 0.00E+00 |
| 2 | GO:0006364: rRNA processing | 4.19E-13 |
| 3 | GO:0010162: seed dormancy process | 1.50E-05 |
| 4 | GO:0006412: translation | 1.51E-05 |
| 5 | GO:0043985: histone H4-R3 methylation | 2.41E-05 |
| 6 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 6.16E-05 |
| 7 | GO:0034470: ncRNA processing | 6.16E-05 |
| 8 | GO:0009561: megagametogenesis | 7.37E-05 |
| 9 | GO:1902626: assembly of large subunit precursor of preribosome | 1.09E-04 |
| 10 | GO:0042256: mature ribosome assembly | 1.09E-04 |
| 11 | GO:0000460: maturation of 5.8S rRNA | 2.21E-04 |
| 12 | GO:0044205: 'de novo' UMP biosynthetic process | 2.21E-04 |
| 13 | GO:0006479: protein methylation | 2.21E-04 |
| 14 | GO:0042274: ribosomal small subunit biogenesis | 2.21E-04 |
| 15 | GO:0042273: ribosomal large subunit biogenesis | 2.21E-04 |
| 16 | GO:0000470: maturation of LSU-rRNA | 3.51E-04 |
| 17 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.20E-04 |
| 18 | GO:0000054: ribosomal subunit export from nucleus | 4.20E-04 |
| 19 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 4.92E-04 |
| 20 | GO:0000028: ribosomal small subunit assembly | 5.68E-04 |
| 21 | GO:0016569: covalent chromatin modification | 6.95E-04 |
| 22 | GO:0009553: embryo sac development | 7.15E-04 |
| 23 | GO:0030422: production of siRNA involved in RNA interference | 8.92E-04 |
| 24 | GO:0010030: positive regulation of seed germination | 1.35E-03 |
| 25 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.55E-03 |
| 26 | GO:0000027: ribosomal large subunit assembly | 1.55E-03 |
| 27 | GO:0042254: ribosome biogenesis | 1.92E-03 |
| 28 | GO:0009294: DNA mediated transformation | 1.98E-03 |
| 29 | GO:0009693: ethylene biosynthetic process | 1.98E-03 |
| 30 | GO:0071215: cellular response to abscisic acid stimulus | 1.98E-03 |
| 31 | GO:0010501: RNA secondary structure unwinding | 2.33E-03 |
| 32 | GO:0006520: cellular amino acid metabolic process | 2.45E-03 |
| 33 | GO:0032502: developmental process | 2.95E-03 |
| 34 | GO:0008219: cell death | 4.34E-03 |
| 35 | GO:0010224: response to UV-B | 7.65E-03 |
| 36 | GO:0006396: RNA processing | 9.75E-03 |
| 37 | GO:0009790: embryo development | 1.25E-02 |
| 38 | GO:0016036: cellular response to phosphate starvation | 1.34E-02 |
| 39 | GO:0006413: translational initiation | 1.34E-02 |
| 40 | GO:0010150: leaf senescence | 1.40E-02 |
| 41 | GO:0007166: cell surface receptor signaling pathway | 1.54E-02 |
| 42 | GO:0009555: pollen development | 4.43E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004070: aspartate carbamoyltransferase activity | 0.00E+00 |
| 2 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 3 | GO:0016435: rRNA (guanine) methyltransferase activity | 0.00E+00 |
| 4 | GO:0003723: RNA binding | 4.62E-07 |
| 5 | GO:0003735: structural constituent of ribosome | 6.43E-07 |
| 6 | GO:0030515: snoRNA binding | 4.42E-06 |
| 7 | GO:0042134: rRNA primary transcript binding | 2.41E-05 |
| 8 | GO:0004407: histone deacetylase activity | 4.33E-05 |
| 9 | GO:0016743: carboxyl- or carbamoyltransferase activity | 6.16E-05 |
| 10 | GO:0003676: nucleic acid binding | 7.12E-05 |
| 11 | GO:0043023: ribosomal large subunit binding | 1.62E-04 |
| 12 | GO:0043022: ribosome binding | 5.68E-04 |
| 13 | GO:0001054: RNA polymerase I activity | 9.78E-04 |
| 14 | GO:0001056: RNA polymerase III activity | 1.07E-03 |
| 15 | GO:0004527: exonuclease activity | 2.45E-03 |
| 16 | GO:0016597: amino acid binding | 3.49E-03 |
| 17 | GO:0004004: ATP-dependent RNA helicase activity | 4.05E-03 |
| 18 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 5.26E-03 |
| 19 | GO:0000166: nucleotide binding | 6.02E-03 |
| 20 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 7.47E-03 |
| 21 | GO:0008026: ATP-dependent helicase activity | 9.96E-03 |
| 22 | GO:0019843: rRNA binding | 1.12E-02 |
| 23 | GO:0003743: translation initiation factor activity | 1.57E-02 |
| 24 | GO:0008168: methyltransferase activity | 1.86E-02 |
| 25 | GO:0016787: hydrolase activity | 2.62E-02 |
| 26 | GO:0003924: GTPase activity | 2.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0005730: nucleolus | 3.68E-27 |
| 3 | GO:0032040: small-subunit processome | 1.26E-07 |
| 4 | GO:0030687: preribosome, large subunit precursor | 4.42E-06 |
| 5 | GO:0022627: cytosolic small ribosomal subunit | 5.71E-06 |
| 6 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 2.41E-05 |
| 7 | GO:0022626: cytosolic ribosome | 7.40E-05 |
| 8 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.93E-04 |
| 9 | GO:0005634: nucleus | 2.22E-04 |
| 10 | GO:0022625: cytosolic large ribosomal subunit | 2.44E-04 |
| 11 | GO:0005840: ribosome | 2.92E-04 |
| 12 | GO:0016363: nuclear matrix | 4.20E-04 |
| 13 | GO:0034399: nuclear periphery | 5.68E-04 |
| 14 | GO:0005736: DNA-directed RNA polymerase I complex | 7.25E-04 |
| 15 | GO:0005666: DNA-directed RNA polymerase III complex | 8.07E-04 |
| 16 | GO:0015030: Cajal body | 8.07E-04 |
| 17 | GO:0019013: viral nucleocapsid | 1.16E-03 |
| 18 | GO:0005829: cytosol | 1.82E-03 |
| 19 | GO:0030529: intracellular ribonucleoprotein complex | 3.63E-03 |
| 20 | GO:0019005: SCF ubiquitin ligase complex | 4.34E-03 |
| 21 | GO:0015934: large ribosomal subunit | 4.80E-03 |
| 22 | GO:0005834: heterotrimeric G-protein complex | 8.77E-03 |
| 23 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.02E-02 |
| 24 | GO:0005654: nucleoplasm | 1.10E-02 |
| 25 | GO:0005737: cytoplasm | 2.50E-02 |
| 26 | GO:0005618: cell wall | 4.83E-02 |