Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G04730

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905177: tracheary element differentiation0.00E+00
2GO:0031648: protein destabilization4.85E-05
3GO:0010623: programmed cell death involved in cell development8.61E-05
4GO:0030100: regulation of endocytosis1.30E-04
5GO:1901000: regulation of response to salt stress1.30E-04
6GO:0010600: regulation of auxin biosynthetic process1.78E-04
7GO:0010508: positive regulation of autophagy1.78E-04
8GO:0006461: protein complex assembly2.30E-04
9GO:0047484: regulation of response to osmotic stress2.85E-04
10GO:0000470: maturation of LSU-rRNA2.85E-04
11GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.42E-04
12GO:0071470: cellular response to osmotic stress3.42E-04
13GO:0010161: red light signaling pathway4.02E-04
14GO:0043086: negative regulation of catalytic activity4.56E-04
15GO:0010928: regulation of auxin mediated signaling pathway4.64E-04
16GO:0009704: de-etiolation4.64E-04
17GO:0051865: protein autoubiquitination5.93E-04
18GO:0006949: syncytium formation7.30E-04
19GO:0016567: protein ubiquitination9.12E-04
20GO:0010102: lateral root morphogenesis9.49E-04
21GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.02E-03
22GO:0006289: nucleotide-excision repair1.26E-03
23GO:0006979: response to oxidative stress1.27E-03
24GO:0010017: red or far-red light signaling pathway1.52E-03
25GO:2000022: regulation of jasmonic acid mediated signaling pathway1.52E-03
26GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.61E-03
27GO:0006284: base-excision repair1.70E-03
28GO:0010089: xylem development1.70E-03
29GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.80E-03
30GO:0000302: response to reactive oxygen species2.29E-03
31GO:0006281: DNA repair2.50E-03
32GO:0009828: plant-type cell wall loosening2.61E-03
33GO:0006310: DNA recombination2.61E-03
34GO:0034599: cellular response to oxidative stress4.26E-03
35GO:0009640: photomorphogenesis4.91E-03
36GO:0010114: response to red light4.91E-03
37GO:0009664: plant-type cell wall organization5.74E-03
38GO:0009585: red, far-red light phototransduction6.02E-03
39GO:0009742: brassinosteroid mediated signaling pathway8.01E-03
40GO:0042744: hydrogen peroxide catabolic process9.85E-03
41GO:0015031: protein transport1.13E-02
42GO:0009739: response to gibberellin1.22E-02
43GO:0009826: unidimensional cell growth1.50E-02
44GO:0080167: response to karrikin1.79E-02
45GO:0015979: photosynthesis1.97E-02
46GO:0016042: lipid catabolic process2.31E-02
47GO:0009735: response to cytokinin3.33E-02
48GO:0009738: abscisic acid-activated signaling pathway3.47E-02
RankGO TermAdjusted P value
1GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity1.87E-05
2GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity1.87E-05
3GO:0017108: 5'-flap endonuclease activity8.61E-05
4GO:0019104: DNA N-glycosylase activity1.78E-04
5GO:0004130: cytochrome-c peroxidase activity2.85E-04
6GO:0004602: glutathione peroxidase activity3.42E-04
7GO:0046910: pectinesterase inhibitor activity8.59E-04
8GO:0004022: alcohol dehydrogenase (NAD) activity9.49E-04
9GO:0008270: zinc ion binding1.67E-03
10GO:0061630: ubiquitin protein ligase activity1.80E-03
11GO:0004518: nuclease activity2.40E-03
12GO:0003684: damaged DNA binding2.61E-03
13GO:0003993: acid phosphatase activity4.26E-03
14GO:0043621: protein self-association5.18E-03
15GO:0019843: rRNA binding8.99E-03
16GO:0046983: protein dimerization activity1.19E-02
17GO:0004842: ubiquitin-protein transferase activity1.23E-02
18GO:0004601: peroxidase activity1.54E-02
19GO:0016788: hydrolase activity, acting on ester bonds1.56E-02
20GO:0052689: carboxylic ester hydrolase activity1.92E-02
21GO:0004871: signal transducer activity2.10E-02
22GO:0003924: GTPase activity2.36E-02
23GO:0043565: sequence-specific DNA binding4.56E-02
RankGO TermAdjusted P value
1GO:0033557: Slx1-Slx4 complex0.00E+00
2GO:0005798: Golgi-associated vesicle2.85E-04
3GO:0009538: photosystem I reaction center4.64E-04
4GO:0009535: chloroplast thylakoid membrane5.76E-04
5GO:0005769: early endosome1.18E-03
6GO:0009941: chloroplast envelope1.75E-03
7GO:0031977: thylakoid lumen4.64E-03
8GO:0009579: thylakoid5.26E-03
9GO:0009534: chloroplast thylakoid5.31E-03
10GO:0005622: intracellular7.80E-03
11GO:0010287: plastoglobule8.66E-03
12GO:0009543: chloroplast thylakoid lumen8.99E-03
13GO:0009505: plant-type cell wall1.12E-02
14GO:0009570: chloroplast stroma1.36E-02
15GO:0022625: cytosolic large ribosomal subunit1.85E-02
16GO:0005634: nucleus2.67E-02
17GO:0009506: plasmodesma3.28E-02
18GO:0005618: cell wall3.54E-02
19GO:0005773: vacuole4.73E-02
20GO:0009507: chloroplast4.84E-02
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Gene type



Gene DE type