co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018293: protein-FAD linkage	0.00E+00
2	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
3	GO:0006593: ornithine catabolic process	0.00E+00
4	GO:1903647: negative regulation of chlorophyll catabolic process	0.00E+00
5	GO:0042362: fat-soluble vitamin biosynthetic process	0.00E+00
6	GO:0042430: indole-containing compound metabolic process	0.00E+00
7	GO:0046177: D-gluconate catabolic process	0.00E+00
8	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
9	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
10	GO:0055114: oxidation-reduction process	1.42E-08
11	GO:0006099: tricarboxylic acid cycle	1.89E-05
12	GO:0044550: secondary metabolite biosynthetic process	1.22E-04
13	GO:0031539: positive regulation of anthocyanin metabolic process	1.35E-04
14	GO:0031468: nuclear envelope reassembly	1.35E-04
15	GO:0006569: tryptophan catabolic process	1.35E-04
16	GO:0019544: arginine catabolic process to glutamate	1.35E-04
17	GO:0006148: inosine catabolic process	1.35E-04
18	GO:0009915: phloem sucrose loading	3.11E-04
19	GO:0006212: uracil catabolic process	3.11E-04
20	GO:0080026: response to indolebutyric acid	3.11E-04
21	GO:0043255: regulation of carbohydrate biosynthetic process	3.11E-04
22	GO:0019483: beta-alanine biosynthetic process	3.11E-04
23	GO:0097054: L-glutamate biosynthetic process	3.11E-04
24	GO:0080183: response to photooxidative stress	3.11E-04
25	GO:0044746: amino acid transmembrane export	5.13E-04
26	GO:0051646: mitochondrion localization	5.13E-04
27	GO:0015940: pantothenate biosynthetic process	5.13E-04
28	GO:0045793: positive regulation of cell size	5.13E-04
29	GO:0051603: proteolysis involved in cellular protein catabolic process	6.00E-04
30	GO:0009625: response to insect	6.94E-04
31	GO:0009963: positive regulation of flavonoid biosynthetic process	7.34E-04
32	GO:0006537: glutamate biosynthetic process	7.34E-04
33	GO:1901332: negative regulation of lateral root development	7.34E-04
34	GO:0080024: indolebutyric acid metabolic process	7.34E-04
35	GO:0032877: positive regulation of DNA endoreduplication	7.34E-04
36	GO:0080022: primary root development	8.75E-04
37	GO:0019676: ammonia assimilation cycle	9.73E-04
38	GO:0051781: positive regulation of cell division	9.73E-04
39	GO:0010387: COP9 signalosome assembly	9.73E-04
40	GO:0015846: polyamine transport	9.73E-04
41	GO:0032366: intracellular sterol transport	9.73E-04
42	GO:0005513: detection of calcium ion	1.23E-03
43	GO:0042732: D-xylose metabolic process	1.51E-03
44	GO:0003006: developmental process involved in reproduction	1.51E-03
45	GO:0002238: response to molecule of fungal origin	1.51E-03
46	GO:0006561: proline biosynthetic process	1.51E-03
47	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	1.51E-03
48	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.81E-03
49	GO:0010189: vitamin E biosynthetic process	1.81E-03
50	GO:0009651: response to salt stress	1.83E-03
51	GO:0071446: cellular response to salicylic acid stimulus	2.12E-03
52	GO:0000338: protein deneddylation	2.12E-03
53	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	2.12E-03
54	GO:0050790: regulation of catalytic activity	2.12E-03
55	GO:0010044: response to aluminum ion	2.12E-03
56	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.46E-03
57	GO:0048658: anther wall tapetum development	2.46E-03
58	GO:0009853: photorespiration	2.70E-03
59	GO:0010099: regulation of photomorphogenesis	2.81E-03
60	GO:0022900: electron transport chain	2.81E-03
61	GO:0010120: camalexin biosynthetic process	2.81E-03
62	GO:0043562: cellular response to nitrogen levels	2.81E-03
63	GO:0006098: pentose-phosphate shunt	3.17E-03
64	GO:0009821: alkaloid biosynthetic process	3.17E-03
65	GO:0080144: amino acid homeostasis	3.17E-03
66	GO:0006631: fatty acid metabolic process	3.20E-03
67	GO:0009640: photomorphogenesis	3.47E-03
68	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.55E-03
69	GO:0010192: mucilage biosynthetic process	3.95E-03
70	GO:0043069: negative regulation of programmed cell death	3.95E-03
71	GO:0009684: indoleacetic acid biosynthetic process	4.36E-03
72	GO:0009682: induced systemic resistance	4.36E-03
73	GO:0052544: defense response by callose deposition in cell wall	4.36E-03
74	GO:0010072: primary shoot apical meristem specification	4.36E-03
75	GO:0006378: mRNA polyadenylation	4.36E-03
76	GO:0009585: red, far-red light phototransduction	4.66E-03
77	GO:0012501: programmed cell death	4.79E-03
78	GO:0002213: defense response to insect	4.79E-03
79	GO:0045454: cell redox homeostasis	5.04E-03
80	GO:0006807: nitrogen compound metabolic process	5.22E-03
81	GO:0006108: malate metabolic process	5.22E-03
82	GO:0006006: glucose metabolic process	5.22E-03
83	GO:0009266: response to temperature stimulus	5.68E-03
84	GO:0002237: response to molecule of bacterial origin	5.68E-03
85	GO:0048316: seed development	5.68E-03
86	GO:0009626: plant-type hypersensitive response	5.86E-03
87	GO:0042343: indole glucosinolate metabolic process	6.14E-03
88	GO:0007030: Golgi organization	6.14E-03
89	GO:0010039: response to iron ion	6.14E-03
90	GO:0006071: glycerol metabolic process	6.62E-03
91	GO:0009624: response to nematode	6.62E-03
92	GO:0042753: positive regulation of circadian rhythm	6.62E-03
93	GO:0006636: unsaturated fatty acid biosynthetic process	6.62E-03
94	GO:0006487: protein N-linked glycosylation	7.11E-03
95	GO:0048511: rhythmic process	8.14E-03
96	GO:0098542: defense response to other organism	8.14E-03
97	GO:0010017: red or far-red light signaling pathway	8.67E-03
98	GO:0042744: hydrogen peroxide catabolic process	9.44E-03
99	GO:0019722: calcium-mediated signaling	9.77E-03
100	GO:0006817: phosphate ion transport	9.77E-03
101	GO:0010118: stomatal movement	1.09E-02
102	GO:0015991: ATP hydrolysis coupled proton transport	1.09E-02
103	GO:0042391: regulation of membrane potential	1.09E-02
104	GO:0034220: ion transmembrane transport	1.09E-02
105	GO:0009958: positive gravitropism	1.15E-02
106	GO:0010150: leaf senescence	1.15E-02
107	GO:0061025: membrane fusion	1.21E-02
108	GO:0009735: response to cytokinin	1.22E-02
109	GO:0055072: iron ion homeostasis	1.27E-02
110	GO:0002229: defense response to oomycetes	1.34E-02
111	GO:0019761: glucosinolate biosynthetic process	1.40E-02
112	GO:0006914: autophagy	1.53E-02
113	GO:0005975: carbohydrate metabolic process	1.65E-02
114	GO:0051607: defense response to virus	1.66E-02
115	GO:0000910: cytokinesis	1.66E-02
116	GO:0009826: unidimensional cell growth	1.71E-02
117	GO:0009615: response to virus	1.73E-02
118	GO:0009816: defense response to bacterium, incompatible interaction	1.80E-02
119	GO:0055085: transmembrane transport	1.85E-02
120	GO:0009627: systemic acquired resistance	1.88E-02
121	GO:0006950: response to stress	1.95E-02
122	GO:0048767: root hair elongation	2.17E-02
123	GO:0010311: lateral root formation	2.17E-02
124	GO:0006811: ion transport	2.24E-02
125	GO:0010218: response to far red light	2.24E-02
126	GO:0007568: aging	2.32E-02
127	GO:0048527: lateral root development	2.32E-02
128	GO:0042542: response to hydrogen peroxide	2.88E-02
129	GO:0010114: response to red light	2.97E-02
130	GO:0009751: response to salicylic acid	3.21E-02
131	GO:0009414: response to water deprivation	3.21E-02
132	GO:0006629: lipid metabolic process	3.26E-02
133	GO:0042742: defense response to bacterium	3.31E-02
134	GO:0006855: drug transmembrane transport	3.31E-02
135	GO:0031347: regulation of defense response	3.40E-02
136	GO:0042538: hyperosmotic salinity response	3.49E-02
137	GO:0009753: response to jasmonic acid	3.49E-02
138	GO:0009809: lignin biosynthetic process	3.67E-02
139	GO:0010224: response to UV-B	3.76E-02
140	GO:0006857: oligopeptide transport	3.85E-02
141	GO:0006096: glycolytic process	4.13E-02
142	GO:0009620: response to fungus	4.42E-02
143	GO:0009740: gibberellic acid mediated signaling pathway	4.52E-02
144	GO:0009734: auxin-activated signaling pathway	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
2	GO:0003837: beta-ureidopropionase activity	0.00E+00
3	GO:0009045: xylose isomerase activity	0.00E+00
4	GO:0046316: gluconokinase activity	0.00E+00
5	GO:0015930: glutamate synthase activity	0.00E+00
6	GO:0010176: homogentisate phytyltransferase activity	0.00E+00
7	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
8	GO:0004129: cytochrome-c oxidase activity	5.46E-06
9	GO:0020037: heme binding	1.09E-05
10	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.92E-05
11	GO:0019825: oxygen binding	4.16E-05
12	GO:0008121: ubiquinol-cytochrome-c reductase activity	7.02E-05
13	GO:0004197: cysteine-type endopeptidase activity	8.94E-05
14	GO:0005506: iron ion binding	1.06E-04
15	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	1.35E-04
16	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	1.35E-04
17	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	1.35E-04
18	GO:0045437: uridine nucleosidase activity	1.35E-04
19	GO:0019786: Atg8-specific protease activity	1.35E-04
20	GO:0016041: glutamate synthase (ferredoxin) activity	1.35E-04
21	GO:0016491: oxidoreductase activity	2.23E-04
22	GO:0008794: arsenate reductase (glutaredoxin) activity	2.34E-04
23	GO:0047724: inosine nucleosidase activity	3.11E-04
24	GO:0019779: Atg8 activating enzyme activity	3.11E-04
25	GO:0047517: 1,4-beta-D-xylan synthase activity	3.11E-04
26	GO:0051980: iron-nicotianamine transmembrane transporter activity	3.11E-04
27	GO:0008517: folic acid transporter activity	3.11E-04
28	GO:0004566: beta-glucuronidase activity	3.11E-04
29	GO:0015179: L-amino acid transmembrane transporter activity	3.11E-04
30	GO:0052692: raffinose alpha-galactosidase activity	5.13E-04
31	GO:0004557: alpha-galactosidase activity	5.13E-04
32	GO:0016805: dipeptidase activity	5.13E-04
33	GO:0008234: cysteine-type peptidase activity	6.53E-04
34	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	7.34E-04
35	GO:0015186: L-glutamine transmembrane transporter activity	7.34E-04
36	GO:0015203: polyamine transmembrane transporter activity	7.34E-04
37	GO:0015035: protein disulfide oxidoreductase activity	9.24E-04
38	GO:0010011: auxin binding	9.73E-04
39	GO:0004576: oligosaccharyl transferase activity	9.73E-04
40	GO:0019776: Atg8 ligase activity	9.73E-04
41	GO:0004659: prenyltransferase activity	9.73E-04
42	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.15E-03
43	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.23E-03
44	GO:0008177: succinate dehydrogenase (ubiquinone) activity	1.23E-03
45	GO:0051538: 3 iron, 4 sulfur cluster binding	1.23E-03
46	GO:0009055: electron carrier activity	1.40E-03
47	GO:0030976: thiamine pyrophosphate binding	1.51E-03
48	GO:0051117: ATPase binding	1.51E-03
49	GO:0016615: malate dehydrogenase activity	1.51E-03
50	GO:0004866: endopeptidase inhibitor activity	1.51E-03
51	GO:0030060: L-malate dehydrogenase activity	1.81E-03
52	GO:0005261: cation channel activity	1.81E-03
53	GO:0008235: metalloexopeptidase activity	2.12E-03
54	GO:0030145: manganese ion binding	2.46E-03
55	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.46E-03
56	GO:0050897: cobalt ion binding	2.46E-03
57	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.17E-03
58	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.17E-03
59	GO:0015174: basic amino acid transmembrane transporter activity	3.55E-03
60	GO:0016844: strictosidine synthase activity	3.55E-03
61	GO:0046961: proton-transporting ATPase activity, rotational mechanism	4.36E-03
62	GO:0004177: aminopeptidase activity	4.36E-03
63	GO:0008559: xenobiotic-transporting ATPase activity	4.36E-03
64	GO:0015198: oligopeptide transporter activity	4.79E-03
65	GO:0004022: alcohol dehydrogenase (NAD) activity	5.22E-03
66	GO:0030552: cAMP binding	6.14E-03
67	GO:0030553: cGMP binding	6.14E-03
68	GO:0043130: ubiquitin binding	7.11E-03
69	GO:0008134: transcription factor binding	7.11E-03
70	GO:0005216: ion channel activity	7.62E-03
71	GO:0008324: cation transmembrane transporter activity	7.62E-03
72	GO:0035251: UDP-glucosyltransferase activity	8.14E-03
73	GO:0030551: cyclic nucleotide binding	1.09E-02
74	GO:0005249: voltage-gated potassium channel activity	1.09E-02
75	GO:0004872: receptor activity	1.27E-02
76	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.46E-02
77	GO:0015250: water channel activity	1.73E-02
78	GO:0051213: dioxygenase activity	1.73E-02
79	GO:0004601: peroxidase activity	1.78E-02
80	GO:0016788: hydrolase activity, acting on ester bonds	1.81E-02
81	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.95E-02
82	GO:0005507: copper ion binding	2.13E-02
83	GO:0004497: monooxygenase activity	2.21E-02
84	GO:0004222: metalloendopeptidase activity	2.24E-02
85	GO:0050661: NADP binding	2.72E-02
86	GO:0051539: 4 iron, 4 sulfur cluster binding	2.72E-02
87	GO:0016787: hydrolase activity	2.75E-02
88	GO:0051537: 2 iron, 2 sulfur cluster binding	3.14E-02
89	GO:0015293: symporter activity	3.23E-02
90	GO:0051287: NAD binding	3.40E-02
91	GO:0003690: double-stranded DNA binding	3.76E-02
92	GO:0045735: nutrient reservoir activity	4.13E-02
93	GO:0022857: transmembrane transporter activity	4.52E-02
94	GO:0016746: transferase activity, transferring acyl groups	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
2	GO:0005773: vacuole	2.16E-10
3	GO:0005764: lysosome	1.09E-05
4	GO:0000325: plant-type vacuole	1.42E-05
5	GO:0045273: respiratory chain complex II	9.09E-05
6	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	9.09E-05
7	GO:0005774: vacuolar membrane	1.61E-04
8	GO:0005750: mitochondrial respiratory chain complex III	3.49E-04
9	GO:0016020: membrane	4.48E-04
10	GO:0045271: respiratory chain complex I	5.33E-04
11	GO:0005849: mRNA cleavage factor complex	7.34E-04
12	GO:0005775: vacuolar lumen	7.34E-04
13	GO:0005747: mitochondrial respiratory chain complex I	7.37E-04
14	GO:0005776: autophagosome	9.73E-04
15	GO:0055035: plastid thylakoid membrane	1.23E-03
16	GO:0005746: mitochondrial respiratory chain	1.23E-03
17	GO:0008250: oligosaccharyltransferase complex	1.23E-03
18	GO:0031463: Cul3-RING ubiquitin ligase complex	1.51E-03
19	GO:0005759: mitochondrial matrix	1.56E-03
20	GO:0005615: extracellular space	2.03E-03
21	GO:0048046: apoplast	2.18E-03
22	GO:0000421: autophagosome membrane	2.46E-03
23	GO:0010494: cytoplasmic stress granule	3.17E-03
24	GO:0009536: plastid	3.17E-03
25	GO:0008180: COP9 signalosome	3.17E-03
26	GO:0005783: endoplasmic reticulum	3.19E-03
27	GO:0005740: mitochondrial envelope	3.95E-03
28	GO:0031966: mitochondrial membrane	4.34E-03
29	GO:0005765: lysosomal membrane	4.36E-03
30	GO:0005753: mitochondrial proton-transporting ATP synthase complex	6.14E-03
31	GO:0005758: mitochondrial intermembrane space	7.11E-03
32	GO:0005618: cell wall	8.15E-03
33	GO:0031410: cytoplasmic vesicle	8.67E-03
34	GO:0005887: integral component of plasma membrane	9.71E-03
35	GO:0005777: peroxisome	1.63E-02
36	GO:0000932: P-body	1.73E-02
37	GO:0005788: endoplasmic reticulum lumen	1.80E-02
38	GO:0005576: extracellular region	2.14E-02
39	GO:0005739: mitochondrion	2.31E-02
40	GO:0005794: Golgi apparatus	2.79E-02
41	GO:0005886: plasma membrane	4.05E-02