co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006592: ornithine biosynthetic process	0.00E+00
2	GO:0046890: regulation of lipid biosynthetic process	0.00E+00
3	GO:0009992: cellular water homeostasis	0.00E+00
4	GO:0010513: positive regulation of phosphatidylinositol biosynthetic process	0.00E+00
5	GO:0009926: auxin polar transport	9.47E-07
6	GO:1990022: RNA polymerase III complex localization to nucleus	4.04E-05
7	GO:0006007: glucose catabolic process	4.04E-05
8	GO:0044376: RNA polymerase II complex import to nucleus	4.04E-05
9	GO:0010265: SCF complex assembly	4.04E-05
10	GO:0009751: response to salicylic acid	9.23E-05
11	GO:0055088: lipid homeostasis	1.00E-04
12	GO:0006695: cholesterol biosynthetic process	1.00E-04
13	GO:0097054: L-glutamate biosynthetic process	1.00E-04
14	GO:0001736: establishment of planar polarity	1.00E-04
15	GO:0031348: negative regulation of defense response	1.25E-04
16	GO:0071494: cellular response to UV-C	1.73E-04
17	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	1.73E-04
18	GO:0040009: regulation of growth rate	1.73E-04
19	GO:0010118: stomatal movement	1.79E-04
20	GO:0009311: oligosaccharide metabolic process	2.55E-04
21	GO:0006537: glutamate biosynthetic process	2.55E-04
22	GO:1902290: positive regulation of defense response to oomycetes	2.55E-04
23	GO:0071281: cellular response to iron ion	2.77E-04
24	GO:0019676: ammonia assimilation cycle	3.43E-04
25	GO:0036065: fucosylation	4.37E-04
26	GO:2000762: regulation of phenylpropanoid metabolic process	4.37E-04
27	GO:0006751: glutathione catabolic process	5.37E-04
28	GO:0019509: L-methionine salvage from methylthioadenosine	6.40E-04
29	GO:0009612: response to mechanical stimulus	6.40E-04
30	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	6.40E-04
31	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	8.61E-04
32	GO:1900150: regulation of defense response to fungus	8.61E-04
33	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	9.77E-04
34	GO:0006526: arginine biosynthetic process	9.77E-04
35	GO:0006468: protein phosphorylation	1.19E-03
36	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	1.22E-03
37	GO:0009641: shade avoidance	1.35E-03
38	GO:0009698: phenylpropanoid metabolic process	1.49E-03
39	GO:0052544: defense response by callose deposition in cell wall	1.49E-03
40	GO:0072593: reactive oxygen species metabolic process	1.49E-03
41	GO:0048765: root hair cell differentiation	1.49E-03
42	GO:0009725: response to hormone	1.77E-03
43	GO:2000028: regulation of photoperiodism, flowering	1.77E-03
44	GO:0002237: response to molecule of bacterial origin	1.92E-03
45	GO:0009969: xyloglucan biosynthetic process	2.07E-03
46	GO:0009901: anther dehiscence	2.07E-03
47	GO:0071732: cellular response to nitric oxide	2.07E-03
48	GO:0006071: glycerol metabolic process	2.23E-03
49	GO:0009863: salicylic acid mediated signaling pathway	2.39E-03
50	GO:0009695: jasmonic acid biosynthetic process	2.55E-03
51	GO:0007166: cell surface receptor signaling pathway	2.65E-03
52	GO:0031408: oxylipin biosynthetic process	2.72E-03
53	GO:0071369: cellular response to ethylene stimulus	3.06E-03
54	GO:0001944: vasculature development	3.06E-03
55	GO:0009625: response to insect	3.06E-03
56	GO:0048443: stamen development	3.24E-03
57	GO:0006284: base-excision repair	3.24E-03
58	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.42E-03
59	GO:0009826: unidimensional cell growth	3.44E-03
60	GO:0010051: xylem and phloem pattern formation	3.61E-03
61	GO:0008360: regulation of cell shape	3.80E-03
62	GO:0010182: sugar mediated signaling pathway	3.80E-03
63	GO:0050832: defense response to fungus	3.91E-03
64	GO:0048544: recognition of pollen	3.99E-03
65	GO:0071555: cell wall organization	4.30E-03
66	GO:0016132: brassinosteroid biosynthetic process	4.38E-03
67	GO:0009733: response to auxin	4.98E-03
68	GO:0010252: auxin homeostasis	5.00E-03
69	GO:0006914: autophagy	5.00E-03
70	GO:0016126: sterol biosynthetic process	5.64E-03
71	GO:0009615: response to virus	5.64E-03
72	GO:0006974: cellular response to DNA damage stimulus	6.09E-03
73	GO:0006950: response to stress	6.31E-03
74	GO:0006629: lipid metabolic process	6.50E-03
75	GO:0009408: response to heat	6.50E-03
76	GO:0008219: cell death	6.77E-03
77	GO:0009753: response to jasmonic acid	6.98E-03
78	GO:0010311: lateral root formation	7.01E-03
79	GO:0009832: plant-type cell wall biogenesis	7.01E-03
80	GO:0010218: response to far red light	7.25E-03
81	GO:0010119: regulation of stomatal movement	7.49E-03
82	GO:0009853: photorespiration	7.99E-03
83	GO:0009867: jasmonic acid mediated signaling pathway	7.99E-03
84	GO:0045087: innate immune response	7.99E-03
85	GO:0009734: auxin-activated signaling pathway	9.16E-03
86	GO:0006486: protein glycosylation	1.18E-02
87	GO:0009736: cytokinin-activated signaling pathway	1.18E-02
88	GO:0051301: cell division	1.26E-02
89	GO:0009909: regulation of flower development	1.26E-02
90	GO:0006096: glycolytic process	1.32E-02
91	GO:0009620: response to fungus	1.41E-02
92	GO:0051726: regulation of cell cycle	1.57E-02
93	GO:0009790: embryo development	1.97E-02
94	GO:0007623: circadian rhythm	2.22E-02
95	GO:0010150: leaf senescence	2.22E-02
96	GO:0010228: vegetative to reproductive phase transition of meristem	2.30E-02
97	GO:0042742: defense response to bacterium	2.35E-02
98	GO:0009617: response to bacterium	2.52E-02
99	GO:0006970: response to osmotic stress	3.20E-02
100	GO:0009723: response to ethylene	3.37E-02
101	GO:0046686: response to cadmium ion	3.65E-02
102	GO:0016192: vesicle-mediated transport	3.67E-02
103	GO:0006952: defense response	3.74E-02
104	GO:0044550: secondary metabolite biosynthetic process	3.76E-02
105	GO:0045454: cell redox homeostasis	4.02E-02
106	GO:0006886: intracellular protein transport	4.11E-02
107	GO:0048364: root development	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
2	GO:0046522: S-methyl-5-thioribose kinase activity	0.00E+00
3	GO:0009918: sterol delta7 reductase activity	0.00E+00
4	GO:0015930: glutamate synthase activity	0.00E+00
5	GO:0008777: acetylornithine deacetylase activity	0.00E+00
6	GO:0047598: 7-dehydrocholesterol reductase activity	0.00E+00
7	GO:0030247: polysaccharide binding	2.45E-07
8	GO:0004321: fatty-acyl-CoA synthase activity	4.04E-05
9	GO:0016041: glutamate synthase (ferredoxin) activity	4.04E-05
10	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	1.00E-04
11	GO:0052692: raffinose alpha-galactosidase activity	1.73E-04
12	GO:0004557: alpha-galactosidase activity	1.73E-04
13	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.55E-04
14	GO:0015301: anion:anion antiporter activity	4.37E-04
15	GO:0005452: inorganic anion exchanger activity	4.37E-04
16	GO:0004040: amidase activity	4.37E-04
17	GO:0051538: 3 iron, 4 sulfur cluster binding	4.37E-04
18	GO:0004656: procollagen-proline 4-dioxygenase activity	6.40E-04
19	GO:0005509: calcium ion binding	6.72E-04
20	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	7.49E-04
21	GO:0003843: 1,3-beta-D-glucan synthase activity	9.77E-04
22	GO:0008417: fucosyltransferase activity	1.10E-03
23	GO:0016207: 4-coumarate-CoA ligase activity	1.10E-03
24	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.10E-03
25	GO:0009672: auxin:proton symporter activity	1.22E-03
26	GO:0005524: ATP binding	1.23E-03
27	GO:0010329: auxin efflux transmembrane transporter activity	1.77E-03
28	GO:0004089: carbonate dehydratase activity	1.77E-03
29	GO:0003712: transcription cofactor activity	2.07E-03
30	GO:0031418: L-ascorbic acid binding	2.39E-03
31	GO:0008237: metallopeptidase activity	5.21E-03
32	GO:0008236: serine-type peptidase activity	6.54E-03
33	GO:0030145: manganese ion binding	7.49E-03
34	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.99E-03
35	GO:0004674: protein serine/threonine kinase activity	8.41E-03
36	GO:0051539: 4 iron, 4 sulfur cluster binding	8.75E-03
37	GO:0051537: 2 iron, 2 sulfur cluster binding	1.01E-02
38	GO:0016874: ligase activity	1.45E-02
39	GO:0015035: protein disulfide oxidoreductase activity	1.54E-02
40	GO:0016301: kinase activity	1.75E-02
41	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.80E-02
42	GO:0005506: iron ion binding	2.31E-02
43	GO:0042802: identical protein binding	2.64E-02
44	GO:0003729: mRNA binding	3.49E-02
45	GO:0005515: protein binding	3.98E-02
46	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.25E-02
47	GO:0003924: GTPase activity	4.67E-02
48	GO:0009055: electron carrier activity	4.90E-02
49	GO:0016787: hydrolase activity	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0030124: AP-4 adaptor complex	1.73E-04
2	GO:0005789: endoplasmic reticulum membrane	2.58E-04
3	GO:0005776: autophagosome	3.43E-04
4	GO:0005829: cytosol	4.31E-04
5	GO:0030131: clathrin adaptor complex	8.61E-04
6	GO:0000148: 1,3-beta-D-glucan synthase complex	9.77E-04
7	GO:0016021: integral component of membrane	1.12E-03
8	GO:0030125: clathrin vesicle coat	1.35E-03
9	GO:0030176: integral component of endoplasmic reticulum membrane	2.07E-03
10	GO:0045271: respiratory chain complex I	2.55E-03
11	GO:0005905: clathrin-coated pit	2.72E-03
12	GO:0031410: cytoplasmic vesicle	2.89E-03
13	GO:0005886: plasma membrane	3.78E-03
14	GO:0009504: cell plate	4.19E-03
15	GO:0032580: Golgi cisterna membrane	5.00E-03
16	GO:0019005: SCF ubiquitin ligase complex	6.77E-03
17	GO:0031966: mitochondrial membrane	1.12E-02
18	GO:0009506: plasmodesma	1.16E-02
19	GO:0005747: mitochondrial respiratory chain complex I	1.35E-02
20	GO:0005623: cell	1.80E-02
21	GO:0005802: trans-Golgi network	1.86E-02
22	GO:0005618: cell wall	2.46E-02
23	GO:0009505: plant-type cell wall	2.94E-02
24	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.24E-02
25	GO:0005874: microtubule	3.45E-02