GO Enrichment Analysis of Co-expressed Genes with
AT3G04400
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006412: translation | 1.53E-84 |
| 2 | GO:0042254: ribosome biogenesis | 7.45E-39 |
| 3 | GO:0000027: ribosomal large subunit assembly | 5.92E-09 |
| 4 | GO:0000028: ribosomal small subunit assembly | 1.50E-06 |
| 5 | GO:1902626: assembly of large subunit precursor of preribosome | 4.34E-06 |
| 6 | GO:0006407: rRNA export from nucleus | 1.54E-04 |
| 7 | GO:2001006: regulation of cellulose biosynthetic process | 1.54E-04 |
| 8 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.54E-04 |
| 9 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.54E-04 |
| 10 | GO:0000387: spliceosomal snRNP assembly | 2.04E-04 |
| 11 | GO:0071668: plant-type cell wall assembly | 3.51E-04 |
| 12 | GO:0042256: mature ribosome assembly | 5.75E-04 |
| 13 | GO:0006241: CTP biosynthetic process | 8.23E-04 |
| 14 | GO:0006165: nucleoside diphosphate phosphorylation | 8.23E-04 |
| 15 | GO:0006228: UTP biosynthetic process | 8.23E-04 |
| 16 | GO:0006183: GTP biosynthetic process | 1.09E-03 |
| 17 | GO:0000398: mRNA splicing, via spliceosome | 1.32E-03 |
| 18 | GO:0043248: proteasome assembly | 1.70E-03 |
| 19 | GO:0006414: translational elongation | 1.78E-03 |
| 20 | GO:0009808: lignin metabolic process | 3.16E-03 |
| 21 | GO:0022900: electron transport chain | 3.16E-03 |
| 22 | GO:0009853: photorespiration | 3.21E-03 |
| 23 | GO:0048589: developmental growth | 3.58E-03 |
| 24 | GO:0009060: aerobic respiration | 3.58E-03 |
| 25 | GO:0098656: anion transmembrane transport | 3.58E-03 |
| 26 | GO:0009245: lipid A biosynthetic process | 3.58E-03 |
| 27 | GO:0006820: anion transport | 5.41E-03 |
| 28 | GO:0006626: protein targeting to mitochondrion | 5.91E-03 |
| 29 | GO:0010102: lateral root morphogenesis | 5.91E-03 |
| 30 | GO:0048467: gynoecium development | 6.42E-03 |
| 31 | GO:0006406: mRNA export from nucleus | 8.05E-03 |
| 32 | GO:0006289: nucleotide-excision repair | 8.05E-03 |
| 33 | GO:0006487: protein N-linked glycosylation | 8.05E-03 |
| 34 | GO:0009651: response to salt stress | 8.38E-03 |
| 35 | GO:0007005: mitochondrion organization | 9.82E-03 |
| 36 | GO:0009793: embryo development ending in seed dormancy | 1.31E-02 |
| 37 | GO:0010029: regulation of seed germination | 2.05E-02 |
| 38 | GO:0000724: double-strand break repair via homologous recombination | 2.72E-02 |
| 39 | GO:0008283: cell proliferation | 3.37E-02 |
| 40 | GO:0009926: auxin polar transport | 3.37E-02 |
| 41 | GO:0009644: response to high light intensity | 3.56E-02 |
| 42 | GO:0009965: leaf morphogenesis | 3.66E-02 |
| 43 | GO:0006486: protein glycosylation | 4.17E-02 |
| 44 | GO:0009626: plant-type hypersensitive response | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003735: structural constituent of ribosome | 2.69E-107 |
| 2 | GO:0003729: mRNA binding | 1.29E-24 |
| 3 | GO:0019843: rRNA binding | 3.48E-08 |
| 4 | GO:0005047: signal recognition particle binding | 5.75E-04 |
| 5 | GO:0004550: nucleoside diphosphate kinase activity | 8.23E-04 |
| 6 | GO:0008097: 5S rRNA binding | 8.23E-04 |
| 7 | GO:0004576: oligosaccharyl transferase activity | 1.09E-03 |
| 8 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 1.38E-03 |
| 9 | GO:0031177: phosphopantetheine binding | 1.70E-03 |
| 10 | GO:0000035: acyl binding | 2.03E-03 |
| 11 | GO:0015288: porin activity | 2.77E-03 |
| 12 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.77E-03 |
| 13 | GO:0050897: cobalt ion binding | 2.93E-03 |
| 14 | GO:0008308: voltage-gated anion channel activity | 3.16E-03 |
| 15 | GO:0001055: RNA polymerase II activity | 4.01E-03 |
| 16 | GO:0001054: RNA polymerase I activity | 4.92E-03 |
| 17 | GO:0004129: cytochrome-c oxidase activity | 4.92E-03 |
| 18 | GO:0008794: arsenate reductase (glutaredoxin) activity | 4.92E-03 |
| 19 | GO:0001056: RNA polymerase III activity | 5.41E-03 |
| 20 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.38E-02 |
| 21 | GO:0003746: translation elongation factor activity | 2.81E-02 |
| 22 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.17E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0005675: holo TFIIH complex | 0.00E+00 |
| 3 | GO:0005840: ribosome | 2.02E-84 |
| 4 | GO:0022625: cytosolic large ribosomal subunit | 5.28E-62 |
| 5 | GO:0022626: cytosolic ribosome | 2.51E-60 |
| 6 | GO:0022627: cytosolic small ribosomal subunit | 6.09E-42 |
| 7 | GO:0005737: cytoplasm | 8.98E-23 |
| 8 | GO:0005730: nucleolus | 7.12E-20 |
| 9 | GO:0005829: cytosol | 1.68E-16 |
| 10 | GO:0009506: plasmodesma | 4.47E-11 |
| 11 | GO:0005774: vacuolar membrane | 3.30E-08 |
| 12 | GO:0016020: membrane | 8.81E-08 |
| 13 | GO:0005618: cell wall | 5.77E-07 |
| 14 | GO:0015935: small ribosomal subunit | 7.66E-07 |
| 15 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.20E-05 |
| 16 | GO:0030686: 90S preribosome | 1.54E-04 |
| 17 | GO:0071011: precatalytic spliceosome | 2.04E-04 |
| 18 | GO:0071013: catalytic step 2 spliceosome | 2.81E-04 |
| 19 | GO:0015934: large ribosomal subunit | 3.14E-04 |
| 20 | GO:0019013: viral nucleocapsid | 3.67E-04 |
| 21 | GO:0005758: mitochondrial intermembrane space | 5.74E-04 |
| 22 | GO:0034719: SMN-Sm protein complex | 5.75E-04 |
| 23 | GO:0005853: eukaryotic translation elongation factor 1 complex | 5.75E-04 |
| 24 | GO:0000439: core TFIIH complex | 5.75E-04 |
| 25 | GO:0045271: respiratory chain complex I | 6.32E-04 |
| 26 | GO:1990726: Lsm1-7-Pat1 complex | 8.23E-04 |
| 27 | GO:0005747: mitochondrial respiratory chain complex I | 9.19E-04 |
| 28 | GO:0005682: U5 snRNP | 1.09E-03 |
| 29 | GO:0005687: U4 snRNP | 1.38E-03 |
| 30 | GO:0097526: spliceosomal tri-snRNP complex | 1.38E-03 |
| 31 | GO:0005746: mitochondrial respiratory chain | 1.38E-03 |
| 32 | GO:0008250: oligosaccharyltransferase complex | 1.38E-03 |
| 33 | GO:0005689: U12-type spliceosomal complex | 2.03E-03 |
| 34 | GO:0005762: mitochondrial large ribosomal subunit | 2.03E-03 |
| 35 | GO:0005773: vacuole | 2.56E-03 |
| 36 | GO:0071004: U2-type prespliceosome | 2.77E-03 |
| 37 | GO:0005688: U6 snRNP | 2.77E-03 |
| 38 | GO:0046930: pore complex | 3.16E-03 |
| 39 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 3.16E-03 |
| 40 | GO:0005736: DNA-directed RNA polymerase I complex | 3.58E-03 |
| 41 | GO:0005685: U1 snRNP | 3.58E-03 |
| 42 | GO:0005666: DNA-directed RNA polymerase III complex | 4.01E-03 |
| 43 | GO:0005686: U2 snRNP | 4.46E-03 |
| 44 | GO:0000418: DNA-directed RNA polymerase IV complex | 4.46E-03 |
| 45 | GO:0008541: proteasome regulatory particle, lid subcomplex | 4.92E-03 |
| 46 | GO:0031966: mitochondrial membrane | 5.18E-03 |
| 47 | GO:0005665: DNA-directed RNA polymerase II, core complex | 5.41E-03 |
| 48 | GO:0000502: proteasome complex | 5.56E-03 |
| 49 | GO:0000419: DNA-directed RNA polymerase V complex | 7.49E-03 |
| 50 | GO:0070469: respiratory chain | 8.63E-03 |
| 51 | GO:0005741: mitochondrial outer membrane | 9.22E-03 |
| 52 | GO:0005886: plasma membrane | 1.07E-02 |
| 53 | GO:0000932: P-body | 1.97E-02 |
| 54 | GO:0005743: mitochondrial inner membrane | 3.62E-02 |
| 55 | GO:0005681: spliceosomal complex | 4.69E-02 |