co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006412: translation	4.35E-141
2	GO:0042254: ribosome biogenesis	3.17E-52
3	GO:0000027: ribosomal large subunit assembly	1.85E-12
4	GO:0000028: ribosomal small subunit assembly	2.35E-08
5	GO:1902626: assembly of large subunit precursor of preribosome	7.24E-06
6	GO:0002181: cytoplasmic translation	7.24E-06
7	GO:0006626: protein targeting to mitochondrion	2.28E-05
8	GO:0009955: adaxial/abaxial pattern specification	1.00E-04
9	GO:0006407: rRNA export from nucleus	2.04E-04
10	GO:0015801: aromatic amino acid transport	2.04E-04
11	GO:0030490: maturation of SSU-rRNA	2.04E-04
12	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.04E-04
13	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.04E-04
14	GO:0000387: spliceosomal snRNP assembly	3.06E-04
15	GO:0009735: response to cytokinin	3.49E-04
16	GO:0034227: tRNA thio-modification	7.44E-04
17	GO:0042256: mature ribosome assembly	7.44E-04
18	GO:0042274: ribosomal small subunit biogenesis	1.41E-03
19	GO:0045040: protein import into mitochondrial outer membrane	2.21E-03
20	GO:0009245: lipid A biosynthetic process	4.70E-03
21	GO:0008283: cell proliferation	6.13E-03
22	GO:0010015: root morphogenesis	6.48E-03
23	GO:0006913: nucleocytoplasmic transport	6.48E-03
24	GO:0009965: leaf morphogenesis	6.89E-03
25	GO:0010102: lateral root morphogenesis	7.78E-03
26	GO:0048467: gynoecium development	8.47E-03
27	GO:0030150: protein import into mitochondrial matrix	1.06E-02
28	GO:0003333: amino acid transmembrane transport	1.22E-02
29	GO:0007005: mitochondrion organization	1.30E-02
30	GO:0006414: translational elongation	1.33E-02
31	GO:0000398: mRNA splicing, via spliceosome	1.36E-02
32	GO:0040007: growth	1.38E-02
33	GO:0000413: protein peptidyl-prolyl isomerization	1.64E-02
34	GO:0006413: translational initiation	1.91E-02
35	GO:0009793: embryo development ending in seed dormancy	2.59E-02
36	GO:0006865: amino acid transport	3.62E-02
37	GO:0009644: response to high light intensity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0003735: structural constituent of ribosome	2.06E-170
2	GO:0003729: mRNA binding	9.73E-31
3	GO:0019843: rRNA binding	6.44E-12
4	GO:0008097: 5S rRNA binding	1.66E-05
5	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.35E-04
6	GO:0015173: aromatic amino acid transmembrane transporter activity	4.57E-04
7	GO:0005275: amine transmembrane transporter activity	1.80E-03
8	GO:0031177: phosphopantetheine binding	2.21E-03
9	GO:0000035: acyl binding	2.66E-03
10	GO:0051920: peroxiredoxin activity	2.66E-03
11	GO:0016209: antioxidant activity	3.63E-03
12	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.63E-03
13	GO:0001055: RNA polymerase II activity	5.27E-03
14	GO:0001054: RNA polymerase I activity	6.48E-03
15	GO:0044183: protein binding involved in protein folding	6.48E-03
16	GO:0003723: RNA binding	6.59E-03
17	GO:0001056: RNA polymerase III activity	7.12E-03
18	GO:0015266: protein channel activity	7.78E-03
19	GO:0050897: cobalt ion binding	3.50E-02
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0005840: ribosome	1.64E-122
3	GO:0022625: cytosolic large ribosomal subunit	1.26E-103
4	GO:0022626: cytosolic ribosome	2.21E-95
5	GO:0022627: cytosolic small ribosomal subunit	6.00E-69
6	GO:0005737: cytoplasm	4.58E-40
7	GO:0005730: nucleolus	6.50E-30
8	GO:0005829: cytosol	1.09E-24
9	GO:0009506: plasmodesma	2.43E-19
10	GO:0015934: large ribosomal subunit	9.55E-15
11	GO:0016020: membrane	2.04E-13
12	GO:0005774: vacuolar membrane	9.05E-11
13	GO:0005618: cell wall	1.75E-08
14	GO:0015935: small ribosomal subunit	3.13E-08
15	GO:0005773: vacuole	7.88E-07
16	GO:0005886: plasma membrane	8.30E-05
17	GO:0030686: 90S preribosome	2.04E-04
18	GO:0071011: precatalytic spliceosome	3.06E-04
19	GO:0005732: small nucleolar ribonucleoprotein complex	3.07E-04
20	GO:0071013: catalytic step 2 spliceosome	4.16E-04
21	GO:0019013: viral nucleocapsid	5.42E-04
22	GO:0034719: SMN-Sm protein complex	7.44E-04
23	GO:0005758: mitochondrial intermembrane space	8.38E-04
24	GO:1990726: Lsm1-7-Pat1 complex	1.06E-03
25	GO:0009507: chloroplast	1.19E-03
26	GO:0005682: U5 snRNP	1.41E-03
27	GO:0005687: U4 snRNP	1.80E-03
28	GO:0097526: spliceosomal tri-snRNP complex	1.80E-03
29	GO:0005689: U12-type spliceosomal complex	2.66E-03
30	GO:0016272: prefoldin complex	2.66E-03
31	GO:0071004: U2-type prespliceosome	3.63E-03
32	GO:0005688: U6 snRNP	3.63E-03
33	GO:0046540: U4/U6 x U5 tri-snRNP complex	4.15E-03
34	GO:0005742: mitochondrial outer membrane translocase complex	4.15E-03
35	GO:0005736: DNA-directed RNA polymerase I complex	4.70E-03
36	GO:0005685: U1 snRNP	4.70E-03
37	GO:0005666: DNA-directed RNA polymerase III complex	5.27E-03
38	GO:0005686: U2 snRNP	5.86E-03
39	GO:0000418: DNA-directed RNA polymerase IV complex	5.86E-03
40	GO:0031307: integral component of mitochondrial outer membrane	7.12E-03
41	GO:0005665: DNA-directed RNA polymerase II, core complex	7.12E-03
42	GO:0005681: spliceosomal complex	9.79E-03
43	GO:0000419: DNA-directed RNA polymerase V complex	9.90E-03
44	GO:0070469: respiratory chain	1.14E-02
45	GO:0000932: P-body	2.61E-02
46	GO:0000786: nucleosome	3.62E-02