co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0030149: sphingolipid catabolic process	0.00E+00
3	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
4	GO:0019458: methionine catabolic process via 2-oxobutanoate	0.00E+00
5	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
6	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
7	GO:0010234: anther wall tapetum cell fate specification	0.00E+00
8	GO:0016102: diterpenoid biosynthetic process	0.00E+00
9	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
10	GO:1902325: negative regulation of chlorophyll biosynthetic process	0.00E+00
11	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
12	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
13	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
14	GO:0055114: oxidation-reduction process	4.46E-06
15	GO:0009651: response to salt stress	1.66E-05
16	GO:0001676: long-chain fatty acid metabolic process	2.67E-05
17	GO:0006869: lipid transport	3.37E-05
18	GO:0006564: L-serine biosynthetic process	7.68E-05
19	GO:0009058: biosynthetic process	1.12E-04
20	GO:0042744: hydrogen peroxide catabolic process	1.31E-04
21	GO:0010019: chloroplast-nucleus signaling pathway	1.53E-04
22	GO:1900057: positive regulation of leaf senescence	2.02E-04
23	GO:0009636: response to toxic substance	2.08E-04
24	GO:1901430: positive regulation of syringal lignin biosynthetic process	2.68E-04
25	GO:0071266: 'de novo' L-methionine biosynthetic process	2.68E-04
26	GO:1901349: glucosinolate transport	2.68E-04
27	GO:0090449: phloem glucosinolate loading	2.68E-04
28	GO:0015812: gamma-aminobutyric acid transport	2.68E-04
29	GO:0019346: transsulfuration	2.68E-04
30	GO:0042964: thioredoxin reduction	2.68E-04
31	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.68E-04
32	GO:0006106: fumarate metabolic process	2.68E-04
33	GO:1990542: mitochondrial transmembrane transport	2.68E-04
34	GO:1903648: positive regulation of chlorophyll catabolic process	2.68E-04
35	GO:0009820: alkaloid metabolic process	2.68E-04
36	GO:0046256: 2,4,6-trinitrotoluene catabolic process	2.68E-04
37	GO:0019343: cysteine biosynthetic process via cystathionine	2.68E-04
38	GO:0009753: response to jasmonic acid	3.32E-04
39	GO:0015786: UDP-glucose transport	5.89E-04
40	GO:0019752: carboxylic acid metabolic process	5.89E-04
41	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.89E-04
42	GO:0071497: cellular response to freezing	5.89E-04
43	GO:0045905: positive regulation of translational termination	5.89E-04
44	GO:0043132: NAD transport	5.89E-04
45	GO:0045901: positive regulation of translational elongation	5.89E-04
46	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	5.89E-04
47	GO:0015802: basic amino acid transport	5.89E-04
48	GO:0006452: translational frameshifting	5.89E-04
49	GO:0006807: nitrogen compound metabolic process	7.86E-04
50	GO:0006954: inflammatory response	9.55E-04
51	GO:0008652: cellular amino acid biosynthetic process	9.55E-04
52	GO:0046417: chorismate metabolic process	9.55E-04
53	GO:0044375: regulation of peroxisome size	9.55E-04
54	GO:0040009: regulation of growth rate	9.55E-04
55	GO:0015783: GDP-fucose transport	9.55E-04
56	GO:0006099: tricarboxylic acid cycle	1.01E-03
57	GO:0006979: response to oxidative stress	1.12E-03
58	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	1.36E-03
59	GO:0015858: nucleoside transport	1.36E-03
60	GO:0051289: protein homotetramerization	1.36E-03
61	GO:0072334: UDP-galactose transmembrane transport	1.36E-03
62	GO:0048511: rhythmic process	1.46E-03
63	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	1.83E-03
64	GO:0051781: positive regulation of cell division	1.83E-03
65	GO:0051365: cellular response to potassium ion starvation	1.83E-03
66	GO:0010089: xylem development	1.89E-03
67	GO:0042631: cellular response to water deprivation	2.21E-03
68	GO:0009164: nucleoside catabolic process	2.33E-03
69	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.33E-03
70	GO:1902183: regulation of shoot apical meristem development	2.33E-03
71	GO:0045116: protein neddylation	2.33E-03
72	GO:0000304: response to singlet oxygen	2.33E-03
73	GO:0006520: cellular amino acid metabolic process	2.39E-03
74	GO:0048831: regulation of shoot system development	2.88E-03
75	GO:0009228: thiamine biosynthetic process	2.88E-03
76	GO:0010193: response to ozone	2.94E-03
77	GO:0044550: secondary metabolite biosynthetic process	3.46E-03
78	GO:0009554: megasporogenesis	3.46E-03
79	GO:0080113: regulation of seed growth	3.46E-03
80	GO:0009648: photoperiodism	3.46E-03
81	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.46E-03
82	GO:0030643: cellular phosphate ion homeostasis	3.46E-03
83	GO:0019760: glucosinolate metabolic process	3.56E-03
84	GO:0009611: response to wounding	3.68E-03
85	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	4.08E-03
86	GO:0050829: defense response to Gram-negative bacterium	4.08E-03
87	GO:0006401: RNA catabolic process	4.08E-03
88	GO:0009610: response to symbiotic fungus	4.08E-03
89	GO:0080027: response to herbivore	4.08E-03
90	GO:0098869: cellular oxidant detoxification	4.08E-03
91	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.73E-03
92	GO:0009642: response to light intensity	4.73E-03
93	GO:0009850: auxin metabolic process	4.73E-03
94	GO:0006102: isocitrate metabolic process	4.73E-03
95	GO:0009751: response to salicylic acid	5.38E-03
96	GO:0007186: G-protein coupled receptor signaling pathway	5.42E-03
97	GO:0006367: transcription initiation from RNA polymerase II promoter	5.42E-03
98	GO:0010204: defense response signaling pathway, resistance gene-independent	5.42E-03
99	GO:0006972: hyperosmotic response	5.42E-03
100	GO:0022900: electron transport chain	5.42E-03
101	GO:0019430: removal of superoxide radicals	5.42E-03
102	GO:0006413: translational initiation	5.47E-03
103	GO:0040008: regulation of growth	5.64E-03
104	GO:0009737: response to abscisic acid	5.73E-03
105	GO:0010150: leaf senescence	5.98E-03
106	GO:0009407: toxin catabolic process	6.11E-03
107	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.14E-03
108	GO:0015780: nucleotide-sugar transport	6.14E-03
109	GO:0046685: response to arsenic-containing substance	6.14E-03
110	GO:0009051: pentose-phosphate shunt, oxidative branch	6.14E-03
111	GO:0009739: response to gibberellin	6.90E-03
112	GO:0009617: response to bacterium	7.49E-03
113	GO:0009970: cellular response to sulfate starvation	7.68E-03
114	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.68E-03
115	GO:0006032: chitin catabolic process	7.68E-03
116	GO:0043069: negative regulation of programmed cell death	7.68E-03
117	GO:0006631: fatty acid metabolic process	8.35E-03
118	GO:0006913: nucleocytoplasmic transport	8.50E-03
119	GO:0072593: reactive oxygen species metabolic process	8.50E-03
120	GO:0009682: induced systemic resistance	8.50E-03
121	GO:0009073: aromatic amino acid family biosynthetic process	8.50E-03
122	GO:0000272: polysaccharide catabolic process	8.50E-03
123	GO:0046686: response to cadmium ion	8.85E-03
124	GO:0009926: auxin polar transport	9.06E-03
125	GO:0006820: anion transport	9.35E-03
126	GO:0045037: protein import into chloroplast stroma	9.35E-03
127	GO:0006790: sulfur compound metabolic process	9.35E-03
128	GO:0006108: malate metabolic process	1.02E-02
129	GO:0006006: glucose metabolic process	1.02E-02
130	GO:0009846: pollen germination	1.14E-02
131	GO:0050832: defense response to fungus	1.17E-02
132	GO:0046854: phosphatidylinositol phosphorylation	1.21E-02
133	GO:0042343: indole glucosinolate metabolic process	1.21E-02
134	GO:0009723: response to ethylene	1.26E-02
135	GO:0000162: tryptophan biosynthetic process	1.30E-02
136	GO:0007275: multicellular organism development	1.39E-02
137	GO:0006289: nucleotide-excision repair	1.40E-02
138	GO:0006874: cellular calcium ion homeostasis	1.50E-02
139	GO:0003333: amino acid transmembrane transport	1.61E-02
140	GO:0016998: cell wall macromolecule catabolic process	1.61E-02
141	GO:0098542: defense response to other organism	1.61E-02
142	GO:0071456: cellular response to hypoxia	1.71E-02
143	GO:0030245: cellulose catabolic process	1.71E-02
144	GO:0010017: red or far-red light signaling pathway	1.71E-02
145	GO:0009561: megagametogenesis	1.94E-02
146	GO:0010584: pollen exine formation	1.94E-02
147	GO:0006817: phosphate ion transport	1.94E-02
148	GO:0009409: response to cold	2.03E-02
149	GO:0008284: positive regulation of cell proliferation	2.05E-02
150	GO:0010118: stomatal movement	2.17E-02
151	GO:0010197: polar nucleus fusion	2.29E-02
152	GO:0048868: pollen tube development	2.29E-02
153	GO:0010183: pollen tube guidance	2.53E-02
154	GO:0009556: microsporogenesis	2.53E-02
155	GO:0000302: response to reactive oxygen species	2.65E-02
156	GO:0016032: viral process	2.78E-02
157	GO:0030163: protein catabolic process	2.91E-02
158	GO:0010252: auxin homeostasis	3.04E-02
159	GO:0006914: autophagy	3.04E-02
160	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.38E-02
161	GO:0010029: regulation of seed germination	3.59E-02
162	GO:0009414: response to water deprivation	3.60E-02
163	GO:0010411: xyloglucan metabolic process	3.88E-02
164	GO:0016311: dephosphorylation	4.02E-02
165	GO:0016049: cell growth	4.02E-02
166	GO:0009735: response to cytokinin	4.09E-02
167	GO:0009817: defense response to fungus, incompatible interaction	4.17E-02
168	GO:0010311: lateral root formation	4.32E-02
169	GO:0009813: flavonoid biosynthetic process	4.32E-02
170	GO:0006811: ion transport	4.47E-02
171	GO:0045087: innate immune response	4.93E-02
172	GO:0009853: photorespiration	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0070401: NADP+ binding	0.00E+00
2	GO:0010211: IAA-Leu conjugate hydrolase activity	0.00E+00
3	GO:0080013: (E,E)-geranyllinalool synthase activity	0.00E+00
4	GO:0010210: IAA-Phe conjugate hydrolase activity	0.00E+00
5	GO:0044610: FMN transmembrane transporter activity	0.00E+00
6	GO:0003796: lysozyme activity	0.00E+00
7	GO:0016229: steroid dehydrogenase activity	0.00E+00
8	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
9	GO:0016881: acid-amino acid ligase activity	0.00E+00
10	GO:0018826: methionine gamma-lyase activity	0.00E+00
11	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
12	GO:0004617: phosphoglycerate dehydrogenase activity	3.29E-06
13	GO:0004601: peroxidase activity	6.99E-05
14	GO:0020037: heme binding	7.13E-05
15	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.12E-04
16	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.12E-04
17	GO:0008289: lipid binding	1.18E-04
18	GO:0102391: decanoate--CoA ligase activity	1.53E-04
19	GO:0004467: long-chain fatty acid-CoA ligase activity	2.02E-04
20	GO:0004033: aldo-keto reductase (NADP) activity	2.55E-04
21	GO:0047326: inositol tetrakisphosphate 5-kinase activity	2.68E-04
22	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	2.68E-04
23	GO:0004048: anthranilate phosphoribosyltransferase activity	2.68E-04
24	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.68E-04
25	GO:0015230: FAD transmembrane transporter activity	2.68E-04
26	GO:0090448: glucosinolate:proton symporter activity	2.68E-04
27	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.68E-04
28	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	2.68E-04
29	GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H	2.68E-04
30	GO:0004333: fumarate hydratase activity	2.68E-04
31	GO:0004123: cystathionine gamma-lyase activity	2.68E-04
32	GO:0010013: N-1-naphthylphthalamic acid binding	2.68E-04
33	GO:0046906: tetrapyrrole binding	2.68E-04
34	GO:0000824: inositol tetrakisphosphate 3-kinase activity	2.68E-04
35	GO:0004106: chorismate mutase activity	5.89E-04
36	GO:0019172: glyoxalase III activity	5.89E-04
37	GO:0008517: folic acid transporter activity	5.89E-04
38	GO:0015228: coenzyme A transmembrane transporter activity	5.89E-04
39	GO:0019781: NEDD8 activating enzyme activity	5.89E-04
40	GO:0004750: ribulose-phosphate 3-epimerase activity	5.89E-04
41	GO:0051724: NAD transporter activity	5.89E-04
42	GO:0030170: pyridoxal phosphate binding	8.15E-04
43	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	9.55E-04
44	GO:0000975: regulatory region DNA binding	9.55E-04
45	GO:0003962: cystathionine gamma-synthase activity	9.55E-04
46	GO:0008253: 5'-nucleotidase activity	9.55E-04
47	GO:0004148: dihydrolipoyl dehydrogenase activity	9.55E-04
48	GO:0005457: GDP-fucose transmembrane transporter activity	9.55E-04
49	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.36E-03
50	GO:0005460: UDP-glucose transmembrane transporter activity	1.36E-03
51	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.36E-03
52	GO:0017077: oxidative phosphorylation uncoupler activity	1.36E-03
53	GO:0001872: (1->3)-beta-D-glucan binding	1.36E-03
54	GO:0019201: nucleotide kinase activity	1.36E-03
55	GO:0051287: NAD binding	1.66E-03
56	GO:0070628: proteasome binding	1.83E-03
57	GO:0008022: protein C-terminus binding	1.83E-03
58	GO:0019199: transmembrane receptor protein kinase activity	1.83E-03
59	GO:0004930: G-protein coupled receptor activity	1.83E-03
60	GO:0015368: calcium:cation antiporter activity	1.83E-03
61	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.83E-03
62	GO:0015369: calcium:proton antiporter activity	1.83E-03
63	GO:0008641: small protein activating enzyme activity	2.33E-03
64	GO:0080122: AMP transmembrane transporter activity	2.33E-03
65	GO:0005459: UDP-galactose transmembrane transporter activity	2.33E-03
66	GO:0005199: structural constituent of cell wall	2.39E-03
67	GO:0043565: sequence-specific DNA binding	2.42E-03
68	GO:0046872: metal ion binding	2.68E-03
69	GO:0004462: lactoylglutathione lyase activity	2.88E-03
70	GO:0016688: L-ascorbate peroxidase activity	2.88E-03
71	GO:0008200: ion channel inhibitor activity	2.88E-03
72	GO:0031593: polyubiquitin binding	2.88E-03
73	GO:0004017: adenylate kinase activity	3.46E-03
74	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.46E-03
75	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	3.46E-03
76	GO:0005347: ATP transmembrane transporter activity	3.46E-03
77	GO:0004656: procollagen-proline 4-dioxygenase activity	3.46E-03
78	GO:0015217: ADP transmembrane transporter activity	3.46E-03
79	GO:0016597: amino acid binding	4.01E-03
80	GO:0043295: glutathione binding	4.08E-03
81	GO:0016831: carboxy-lyase activity	4.08E-03
82	GO:0005338: nucleotide-sugar transmembrane transporter activity	4.08E-03
83	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.50E-03
84	GO:0043022: ribosome binding	4.73E-03
85	GO:0015491: cation:cation antiporter activity	4.73E-03
86	GO:0015288: porin activity	4.73E-03
87	GO:0008308: voltage-gated anion channel activity	5.42E-03
88	GO:0008135: translation factor activity, RNA binding	5.42E-03
89	GO:0000989: transcription factor activity, transcription factor binding	6.14E-03
90	GO:0071949: FAD binding	6.14E-03
91	GO:0005507: copper ion binding	6.57E-03
92	GO:0009672: auxin:proton symporter activity	6.90E-03
93	GO:0016844: strictosidine synthase activity	6.90E-03
94	GO:0003743: translation initiation factor activity	7.29E-03
95	GO:0004568: chitinase activity	7.68E-03
96	GO:0004177: aminopeptidase activity	8.50E-03
97	GO:0008559: xenobiotic-transporting ATPase activity	8.50E-03
98	GO:0004364: glutathione transferase activity	8.70E-03
99	GO:0010329: auxin efflux transmembrane transporter activity	1.02E-02
100	GO:0008083: growth factor activity	1.11E-02
101	GO:0005506: iron ion binding	1.18E-02
102	GO:0004970: ionotropic glutamate receptor activity	1.21E-02
103	GO:0005217: intracellular ligand-gated ion channel activity	1.21E-02
104	GO:0004190: aspartic-type endopeptidase activity	1.21E-02
105	GO:0004867: serine-type endopeptidase inhibitor activity	1.21E-02
106	GO:0008134: transcription factor binding	1.40E-02
107	GO:0031418: L-ascorbic acid binding	1.40E-02
108	GO:0043130: ubiquitin binding	1.40E-02
109	GO:0003824: catalytic activity	1.42E-02
110	GO:0004298: threonine-type endopeptidase activity	1.61E-02
111	GO:0010333: terpene synthase activity	1.61E-02
112	GO:0008810: cellulase activity	1.82E-02
113	GO:0008514: organic anion transmembrane transporter activity	1.94E-02
114	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.99E-02
115	GO:0019825: oxygen binding	2.23E-02
116	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.25E-02
117	GO:0004791: thioredoxin-disulfide reductase activity	2.41E-02
118	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.65E-02
119	GO:0004518: nuclease activity	2.78E-02
120	GO:0016791: phosphatase activity	3.04E-02
121	GO:0003684: damaged DNA binding	3.04E-02
122	GO:0008237: metallopeptidase activity	3.18E-02
123	GO:0051213: dioxygenase activity	3.45E-02
124	GO:0044212: transcription regulatory region DNA binding	3.73E-02
125	GO:0004721: phosphoprotein phosphatase activity	3.88E-02
126	GO:0030247: polysaccharide binding	3.88E-02
127	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.88E-02
128	GO:0004222: metalloendopeptidase activity	4.47E-02
129	GO:0046982: protein heterodimerization activity	4.57E-02
130	GO:0000287: magnesium ion binding	4.57E-02
131	GO:0050897: cobalt ion binding	4.62E-02
132	GO:0030145: manganese ion binding	4.62E-02
133	GO:0016788: hydrolase activity, acting on ester bonds	4.74E-02
134	GO:0003746: translation elongation factor activity	4.93E-02
135	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0019867: outer membrane	0.00E+00
2	GO:0046861: glyoxysomal membrane	1.18E-05
3	GO:0005618: cell wall	1.37E-04
4	GO:0005829: cytosol	1.59E-04
5	GO:0045252: oxoglutarate dehydrogenase complex	2.68E-04
6	GO:0045239: tricarboxylic acid cycle enzyme complex	2.68E-04
7	GO:0005774: vacuolar membrane	2.81E-04
8	GO:0009514: glyoxysome	3.14E-04
9	GO:0009530: primary cell wall	9.55E-04
10	GO:0005777: peroxisome	1.21E-03
11	GO:0005741: mitochondrial outer membrane	1.46E-03
12	GO:0009536: plastid	1.72E-03
13	GO:0005576: extracellular region	1.83E-03
14	GO:0031965: nuclear membrane	2.75E-03
15	GO:0000974: Prp19 complex	2.88E-03
16	GO:0009986: cell surface	4.08E-03
17	GO:0000421: autophagosome membrane	4.73E-03
18	GO:0005779: integral component of peroxisomal membrane	5.42E-03
19	GO:0046930: pore complex	5.42E-03
20	GO:0009707: chloroplast outer membrane	5.54E-03
21	GO:0000325: plant-type vacuole	6.40E-03
22	GO:0009506: plasmodesma	6.61E-03
23	GO:0071011: precatalytic spliceosome	6.90E-03
24	GO:0031225: anchored component of membrane	7.70E-03
25	GO:0071013: catalytic step 2 spliceosome	8.50E-03
26	GO:0005750: mitochondrial respiratory chain complex III	1.11E-02
27	GO:0030176: integral component of endoplasmic reticulum membrane	1.21E-02
28	GO:0000502: proteasome complex	1.22E-02
29	GO:0005783: endoplasmic reticulum	1.34E-02
30	GO:0005758: mitochondrial intermembrane space	1.40E-02
31	GO:0070469: respiratory chain	1.50E-02
32	GO:0005839: proteasome core complex	1.61E-02
33	GO:0031410: cytoplasmic vesicle	1.71E-02
34	GO:0048046: apoplast	1.79E-02
35	GO:0005886: plasma membrane	1.87E-02
36	GO:0005759: mitochondrial matrix	2.75E-02
37	GO:0071944: cell periphery	2.91E-02
38	GO:0005778: peroxisomal membrane	3.18E-02
39	GO:0005615: extracellular space	3.38E-02
40	GO:0016020: membrane	3.66E-02
41	GO:0046658: anchored component of plasma membrane	3.99E-02