Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G04010

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009268: response to pH0.00E+00
2GO:2001143: N-methylnicotinate transport0.00E+00
3GO:0046398: UDP-glucuronate metabolic process0.00E+00
4GO:0052573: UDP-D-galactose metabolic process0.00E+00
5GO:0006862: nucleotide transport0.00E+00
6GO:2001142: nicotinate transport0.00E+00
7GO:0060416: response to growth hormone0.00E+00
8GO:0042353: fucose biosynthetic process0.00E+00
9GO:0010046: response to mycotoxin0.00E+00
10GO:0046967: cytosol to ER transport0.00E+00
11GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
12GO:0009611: response to wounding7.21E-07
13GO:0009737: response to abscisic acid1.10E-05
14GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.22E-05
15GO:0033014: tetrapyrrole biosynthetic process2.76E-05
16GO:0034440: lipid oxidation4.98E-05
17GO:0009695: jasmonic acid biosynthetic process1.04E-04
18GO:0010200: response to chitin1.36E-04
19GO:0080086: stamen filament development1.58E-04
20GO:0051707: response to other organism1.78E-04
21GO:0006955: immune response2.07E-04
22GO:2000070: regulation of response to water deprivation2.62E-04
23GO:0045010: actin nucleation2.62E-04
24GO:0006470: protein dephosphorylation2.65E-04
25GO:0009966: regulation of signal transduction2.72E-04
26GO:0051180: vitamin transport2.72E-04
27GO:0007229: integrin-mediated signaling pathway2.72E-04
28GO:0030974: thiamine pyrophosphate transport2.72E-04
29GO:0050691: regulation of defense response to virus by host2.72E-04
30GO:0006680: glucosylceramide catabolic process2.72E-04
31GO:0009651: response to salt stress2.76E-04
32GO:0009753: response to jasmonic acid3.51E-04
33GO:0009835: fruit ripening3.90E-04
34GO:0006783: heme biosynthetic process3.90E-04
35GO:0006970: response to osmotic stress5.33E-04
36GO:0010507: negative regulation of autophagy5.99E-04
37GO:0046939: nucleotide phosphorylation5.99E-04
38GO:0042754: negative regulation of circadian rhythm5.99E-04
39GO:0010372: positive regulation of gibberellin biosynthetic process5.99E-04
40GO:0006741: NADP biosynthetic process5.99E-04
41GO:2000030: regulation of response to red or far red light5.99E-04
42GO:0044419: interspecies interaction between organisms5.99E-04
43GO:0015893: drug transport5.99E-04
44GO:0080148: negative regulation of response to water deprivation5.99E-04
45GO:0080167: response to karrikin6.85E-04
46GO:0009409: response to cold7.06E-04
47GO:0006081: cellular aldehyde metabolic process9.72E-04
48GO:0019674: NAD metabolic process9.72E-04
49GO:0006011: UDP-glucose metabolic process9.72E-04
50GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'9.72E-04
51GO:0080168: abscisic acid transport9.72E-04
52GO:0006598: polyamine catabolic process9.72E-04
53GO:0009555: pollen development9.72E-04
54GO:0055074: calcium ion homeostasis9.72E-04
55GO:0046854: phosphatidylinositol phosphorylation1.01E-03
56GO:0009901: anther dehiscence1.01E-03
57GO:0006839: mitochondrial transport1.16E-03
58GO:0019363: pyridine nucleotide biosynthetic process1.39E-03
59GO:0009226: nucleotide-sugar biosynthetic process1.39E-03
60GO:0009399: nitrogen fixation1.39E-03
61GO:0080024: indolebutyric acid metabolic process1.39E-03
62GO:0031408: oxylipin biosynthetic process1.50E-03
63GO:0009693: ethylene biosynthetic process1.79E-03
64GO:0009686: gibberellin biosynthetic process1.79E-03
65GO:0040007: growth1.79E-03
66GO:0015743: malate transport1.86E-03
67GO:0006085: acetyl-CoA biosynthetic process1.86E-03
68GO:0045727: positive regulation of translation1.86E-03
69GO:0010107: potassium ion import1.86E-03
70GO:0033356: UDP-L-arabinose metabolic process1.86E-03
71GO:0006749: glutathione metabolic process1.86E-03
72GO:0015867: ATP transport1.86E-03
73GO:1902347: response to strigolactone1.86E-03
74GO:0009694: jasmonic acid metabolic process1.86E-03
75GO:0009873: ethylene-activated signaling pathway2.12E-03
76GO:0048653: anther development2.27E-03
77GO:0009247: glycolipid biosynthetic process2.37E-03
78GO:0030041: actin filament polymerization2.37E-03
79GO:0045487: gibberellin catabolic process2.37E-03
80GO:0048544: recognition of pollen2.63E-03
81GO:0009723: response to ethylene2.85E-03
82GO:0015866: ADP transport2.93E-03
83GO:0006777: Mo-molybdopterin cofactor biosynthetic process2.93E-03
84GO:0010256: endomembrane system organization2.93E-03
85GO:0048317: seed morphogenesis2.93E-03
86GO:0006796: phosphate-containing compound metabolic process2.93E-03
87GO:1900425: negative regulation of defense response to bacterium2.93E-03
88GO:0010337: regulation of salicylic acid metabolic process2.93E-03
89GO:0010193: response to ozone3.02E-03
90GO:0006952: defense response3.25E-03
91GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.52E-03
92GO:0010286: heat acclimation3.88E-03
93GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.15E-03
94GO:0006401: RNA catabolic process4.15E-03
95GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway4.15E-03
96GO:0015937: coenzyme A biosynthetic process4.15E-03
97GO:1900057: positive regulation of leaf senescence4.15E-03
98GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.61E-03
99GO:0006402: mRNA catabolic process4.82E-03
100GO:0009787: regulation of abscisic acid-activated signaling pathway4.82E-03
101GO:1900150: regulation of defense response to fungus4.82E-03
102GO:0019375: galactolipid biosynthetic process4.82E-03
103GO:0009415: response to water4.82E-03
104GO:0009704: de-etiolation4.82E-03
105GO:0015995: chlorophyll biosynthetic process5.13E-03
106GO:0009699: phenylpropanoid biosynthetic process5.52E-03
107GO:0009932: cell tip growth5.52E-03
108GO:0048193: Golgi vesicle transport5.52E-03
109GO:0010345: suberin biosynthetic process6.25E-03
110GO:0098656: anion transmembrane transport6.25E-03
111GO:0010119: regulation of stomatal movement6.57E-03
112GO:0006779: porphyrin-containing compound biosynthetic process7.03E-03
113GO:0009086: methionine biosynthetic process7.03E-03
114GO:0008202: steroid metabolic process7.03E-03
115GO:0048829: root cap development7.82E-03
116GO:0007064: mitotic sister chromatid cohesion7.82E-03
117GO:0006782: protoporphyrinogen IX biosynthetic process7.82E-03
118GO:0019538: protein metabolic process7.82E-03
119GO:0006468: protein phosphorylation7.98E-03
120GO:0030148: sphingolipid biosynthetic process8.66E-03
121GO:0010015: root morphogenesis8.66E-03
122GO:0072593: reactive oxygen species metabolic process8.66E-03
123GO:0009640: photomorphogenesis9.30E-03
124GO:0046686: response to cadmium ion9.32E-03
125GO:0071365: cellular response to auxin stimulus9.52E-03
126GO:0006820: anion transport9.52E-03
127GO:0010105: negative regulation of ethylene-activated signaling pathway9.52E-03
128GO:0009644: response to high light intensity1.01E-02
129GO:0018107: peptidyl-threonine phosphorylation1.04E-02
130GO:0055046: microgametogenesis1.04E-02
131GO:0009636: response to toxic substance1.05E-02
132GO:0034605: cellular response to heat1.13E-02
133GO:0002237: response to molecule of bacterial origin1.13E-02
134GO:0009414: response to water deprivation1.22E-02
135GO:0009969: xyloglucan biosynthetic process1.23E-02
136GO:0071732: cellular response to nitric oxide1.23E-02
137GO:0090351: seedling development1.23E-02
138GO:0070588: calcium ion transmembrane transport1.23E-02
139GO:0006979: response to oxidative stress1.28E-02
140GO:0009738: abscisic acid-activated signaling pathway1.30E-02
141GO:0010224: response to UV-B1.30E-02
142GO:2000377: regulation of reactive oxygen species metabolic process1.43E-02
143GO:0009863: salicylic acid mediated signaling pathway1.43E-02
144GO:0035556: intracellular signal transduction1.48E-02
145GO:0009620: response to fungus1.64E-02
146GO:0009269: response to desiccation1.64E-02
147GO:0016998: cell wall macromolecule catabolic process1.64E-02
148GO:0031348: negative regulation of defense response1.75E-02
149GO:0030245: cellulose catabolic process1.75E-02
150GO:0016226: iron-sulfur cluster assembly1.75E-02
151GO:0030433: ubiquitin-dependent ERAD pathway1.75E-02
152GO:0071369: cellular response to ethylene stimulus1.86E-02
153GO:0019722: calcium-mediated signaling1.97E-02
154GO:0009306: protein secretion1.97E-02
155GO:0000398: mRNA splicing, via spliceosome2.07E-02
156GO:0010118: stomatal movement2.21E-02
157GO:0016310: phosphorylation2.22E-02
158GO:0009408: response to heat2.32E-02
159GO:0009960: endosperm development2.33E-02
160GO:0071472: cellular response to salt stress2.33E-02
161GO:0006814: sodium ion transport2.45E-02
162GO:0009749: response to glucose2.58E-02
163GO:0009790: embryo development2.62E-02
164GO:0006635: fatty acid beta-oxidation2.71E-02
165GO:0031047: gene silencing by RNA2.84E-02
166GO:1901657: glycosyl compound metabolic process2.97E-02
167GO:0071281: cellular response to iron ion2.97E-02
168GO:0019760: glucosinolate metabolic process3.10E-02
169GO:0009639: response to red or far red light3.10E-02
170GO:0007623: circadian rhythm3.10E-02
171GO:0051607: defense response to virus3.38E-02
172GO:0009615: response to virus3.52E-02
173GO:0001666: response to hypoxia3.52E-02
174GO:0010027: thylakoid membrane organization3.52E-02
175GO:0009617: response to bacterium3.70E-02
176GO:0009627: systemic acquired resistance3.80E-02
177GO:0008219: cell death4.25E-02
178GO:0010311: lateral root formation4.40E-02
179GO:0009407: toxin catabolic process4.55E-02
180GO:0006811: ion transport4.55E-02
181GO:0048527: lateral root development4.71E-02
182GO:0009631: cold acclimation4.71E-02
183GO:0006865: amino acid transport4.86E-02
RankGO TermAdjusted P value
1GO:0061798: GTP 3',8'-cyclase activity0.00E+00
2GO:0080123: jasmonate-amino synthetase activity0.00E+00
3GO:0090416: nicotinate transporter activity0.00E+00
4GO:0015215: nucleotide transmembrane transporter activity0.00E+00
5GO:0010491: UTP:arabinose-1-phosphate uridylyltransferase activity0.00E+00
6GO:0070566: adenylyltransferase activity0.00E+00
7GO:0008419: RNA lariat debranching enzyme activity0.00E+00
8GO:0033721: aldehyde dehydrogenase (NADP+) activity0.00E+00
9GO:0005522: profilin binding0.00E+00
10GO:0017103: UTP:galactose-1-phosphate uridylyltransferase activity0.00E+00
11GO:0051748: UTP-monosaccharide-1-phosphate uridylyltransferase activity0.00E+00
12GO:0047338: UTP:xylose-1-phosphate uridylyltransferase activity0.00E+00
13GO:0047350: glucuronate-1-phosphate uridylyltransferase activity0.00E+00
14GO:0090417: N-methylnicotinate transporter activity0.00E+00
15GO:0016165: linoleate 13S-lipoxygenase activity1.22E-05
16GO:0005432: calcium:sodium antiporter activity2.76E-05
17GO:0102425: myricetin 3-O-glucosyltransferase activity2.07E-04
18GO:0102360: daphnetin 3-O-glucosyltransferase activity2.07E-04
19GO:0004722: protein serine/threonine phosphatase activity2.34E-04
20GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity2.62E-04
21GO:0047893: flavonol 3-O-glucosyltransferase activity2.62E-04
22GO:0042736: NADH kinase activity2.72E-04
23GO:0052894: norspermine:oxygen oxidoreductase activity2.72E-04
24GO:0090422: thiamine pyrophosphate transporter activity2.72E-04
25GO:0004348: glucosylceramidase activity2.72E-04
26GO:0047150: betaine-homocysteine S-methyltransferase activity2.72E-04
27GO:0004325: ferrochelatase activity2.72E-04
28GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity2.72E-04
29GO:0090440: abscisic acid transporter activity2.72E-04
30GO:0003951: NAD+ kinase activity3.23E-04
31GO:0004594: pantothenate kinase activity5.99E-04
32GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity5.99E-04
33GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity5.99E-04
34GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.99E-04
35GO:0016307: phosphatidylinositol phosphate kinase activity5.99E-04
36GO:0004103: choline kinase activity5.99E-04
37GO:0008883: glutamyl-tRNA reductase activity5.99E-04
38GO:0019888: protein phosphatase regulator activity8.06E-04
39GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity9.72E-04
40GO:0046592: polyamine oxidase activity9.72E-04
41GO:0004758: serine C-palmitoyltransferase activity9.72E-04
42GO:0046423: allene-oxide cyclase activity9.72E-04
43GO:0004383: guanylate cyclase activity9.72E-04
44GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity9.72E-04
45GO:0043565: sequence-specific DNA binding1.01E-03
46GO:0004712: protein serine/threonine/tyrosine kinase activity1.10E-03
47GO:0015297: antiporter activity1.10E-03
48GO:0019201: nucleotide kinase activity1.39E-03
49GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity1.39E-03
50GO:0001653: peptide receptor activity1.39E-03
51GO:0035250: UDP-galactosyltransferase activity1.39E-03
52GO:0004715: non-membrane spanning protein tyrosine kinase activity1.39E-03
53GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.39E-03
54GO:0035251: UDP-glucosyltransferase activity1.50E-03
55GO:0004659: prenyltransferase activity1.86E-03
56GO:0043015: gamma-tubulin binding1.86E-03
57GO:0005253: anion channel activity1.86E-03
58GO:0005524: ATP binding2.22E-03
59GO:0002020: protease binding2.37E-03
60GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.37E-03
61GO:0004356: glutamate-ammonia ligase activity2.37E-03
62GO:0008381: mechanically-gated ion channel activity2.37E-03
63GO:0009922: fatty acid elongase activity2.37E-03
64GO:0003785: actin monomer binding2.37E-03
65GO:0019901: protein kinase binding2.82E-03
66GO:0004029: aldehyde dehydrogenase (NAD) activity2.93E-03
67GO:0016301: kinase activity3.22E-03
68GO:0051015: actin filament binding3.43E-03
69GO:0019900: kinase binding3.52E-03
70GO:0015217: ADP transmembrane transporter activity3.52E-03
71GO:0004017: adenylate kinase activity3.52E-03
72GO:0003950: NAD+ ADP-ribosyltransferase activity3.52E-03
73GO:0005347: ATP transmembrane transporter activity3.52E-03
74GO:0044212: transcription regulatory region DNA binding3.91E-03
75GO:0004143: diacylglycerol kinase activity4.15E-03
76GO:0004427: inorganic diphosphatase activity4.15E-03
77GO:0016621: cinnamoyl-CoA reductase activity4.15E-03
78GO:0015140: malate transmembrane transporter activity4.15E-03
79GO:0019899: enzyme binding4.15E-03
80GO:0030170: pyridoxal phosphate binding4.69E-03
81GO:0015491: cation:cation antiporter activity4.82E-03
82GO:0004721: phosphoprotein phosphatase activity5.13E-03
83GO:0008142: oxysterol binding5.52E-03
84GO:0004430: 1-phosphatidylinositol 4-kinase activity5.52E-03
85GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors6.25E-03
86GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.03E-03
87GO:0047617: acyl-CoA hydrolase activity7.03E-03
88GO:0008194: UDP-glycosyltransferase activity7.13E-03
89GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity7.82E-03
90GO:0004864: protein phosphatase inhibitor activity7.82E-03
91GO:0004713: protein tyrosine kinase activity7.82E-03
92GO:0004672: protein kinase activity8.31E-03
93GO:0004860: protein kinase inhibitor activity8.66E-03
94GO:0005262: calcium channel activity1.04E-02
95GO:0000175: 3'-5'-exoribonuclease activity1.04E-02
96GO:0005315: inorganic phosphate transmembrane transporter activity1.04E-02
97GO:0008131: primary amine oxidase activity1.13E-02
98GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.13E-02
99GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.33E-02
100GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.33E-02
101GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.33E-02
102GO:0051087: chaperone binding1.53E-02
103GO:0019706: protein-cysteine S-palmitoyltransferase activity1.64E-02
104GO:0080043: quercetin 3-O-glucosyltransferase activity1.64E-02
105GO:0080044: quercetin 7-O-glucosyltransferase activity1.64E-02
106GO:0004540: ribonuclease activity1.64E-02
107GO:0003779: actin binding1.74E-02
108GO:0022891: substrate-specific transmembrane transporter activity1.86E-02
109GO:0008514: organic anion transmembrane transporter activity1.97E-02
110GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.07E-02
111GO:0016758: transferase activity, transferring hexosyl groups2.19E-02
112GO:0016853: isomerase activity2.45E-02
113GO:0050662: coenzyme binding2.45E-02
114GO:0015144: carbohydrate transmembrane transporter activity2.69E-02
115GO:0004518: nuclease activity2.84E-02
116GO:0005351: sugar:proton symporter activity3.03E-02
117GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.24E-02
118GO:0005509: calcium ion binding3.45E-02
119GO:0004674: protein serine/threonine kinase activity3.50E-02
120GO:0008375: acetylglucosaminyltransferase activity3.80E-02
121GO:0042802: identical protein binding3.93E-02
122GO:0102483: scopolin beta-glucosidase activity3.95E-02
123GO:0004806: triglyceride lipase activity3.95E-02
124GO:0004004: ATP-dependent RNA helicase activity3.95E-02
125GO:0003700: transcription factor activity, sequence-specific DNA binding4.29E-02
126GO:0015238: drug transmembrane transporter activity4.40E-02
127GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.71E-02
RankGO TermAdjusted P value
1GO:0016363: nuclear matrix1.58E-04
2GO:0019008: molybdopterin synthase complex2.72E-04
3GO:0005911: cell-cell junction2.72E-04
4GO:0016442: RISC complex2.72E-04
5GO:0008287: protein serine/threonine phosphatase complex9.72E-04
6GO:0005743: mitochondrial inner membrane1.19E-03
7GO:0005886: plasma membrane1.96E-03
8GO:0000178: exosome (RNase complex)2.37E-03
9GO:0030173: integral component of Golgi membrane3.52E-03
10GO:0005737: cytoplasm3.58E-03
11GO:0000932: P-body4.36E-03
12GO:0005779: integral component of peroxisomal membrane5.52E-03
13GO:0009536: plastid5.85E-03
14GO:0010494: cytoplasmic stress granule6.25E-03
15GO:0000159: protein phosphatase type 2A complex8.66E-03
16GO:0071013: catalytic step 2 spliceosome8.66E-03
17GO:0048471: perinuclear region of cytoplasm8.66E-03
18GO:0046658: anchored component of plasma membrane8.84E-03
19GO:0090406: pollen tube9.30E-03
20GO:0005829: cytosol1.01E-02
21GO:0005758: mitochondrial intermembrane space1.43E-02
22GO:0009706: chloroplast inner membrane1.79E-02
23GO:0030136: clathrin-coated vesicle2.09E-02
24GO:0005770: late endosome2.33E-02
25GO:0031225: anchored component of membrane2.65E-02
26GO:0016021: integral component of membrane3.07E-02
27GO:0032580: Golgi cisterna membrane3.10E-02
28GO:0005778: peroxisomal membrane3.24E-02
29GO:0019005: SCF ubiquitin ligase complex4.25E-02
30GO:0009707: chloroplast outer membrane4.25E-02
31GO:0000325: plant-type vacuole4.71E-02
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Gene type



Gene DE type