GO Enrichment Analysis of Co-expressed Genes with
AT3G03060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 6 | GO:1902184: negative regulation of shoot apical meristem development | 0.00E+00 |
| 7 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 8 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 9 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 10 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 11 | GO:0080180: 2-methylguanosine metabolic process | 0.00E+00 |
| 12 | GO:0006364: rRNA processing | 4.65E-17 |
| 13 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.70E-09 |
| 14 | GO:0009553: embryo sac development | 8.64E-07 |
| 15 | GO:0042254: ribosome biogenesis | 1.32E-06 |
| 16 | GO:0010162: seed dormancy process | 8.71E-06 |
| 17 | GO:0042273: ribosomal large subunit biogenesis | 2.56E-05 |
| 18 | GO:0010501: RNA secondary structure unwinding | 9.90E-05 |
| 19 | GO:0000028: ribosomal small subunit assembly | 1.45E-04 |
| 20 | GO:0031120: snRNA pseudouridine synthesis | 1.84E-04 |
| 21 | GO:0000469: cleavage involved in rRNA processing | 1.84E-04 |
| 22 | GO:0031118: rRNA pseudouridine synthesis | 1.84E-04 |
| 23 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 1.84E-04 |
| 24 | GO:0030490: maturation of SSU-rRNA | 1.84E-04 |
| 25 | GO:2000232: regulation of rRNA processing | 1.84E-04 |
| 26 | GO:0043985: histone H4-R3 methylation | 1.84E-04 |
| 27 | GO:0080009: mRNA methylation | 4.15E-04 |
| 28 | GO:0045041: protein import into mitochondrial intermembrane space | 4.15E-04 |
| 29 | GO:0034470: ncRNA processing | 4.15E-04 |
| 30 | GO:0009451: RNA modification | 5.21E-04 |
| 31 | GO:0006412: translation | 5.59E-04 |
| 32 | GO:0045039: protein import into mitochondrial inner membrane | 6.76E-04 |
| 33 | GO:0045604: regulation of epidermal cell differentiation | 6.76E-04 |
| 34 | GO:0006421: asparaginyl-tRNA aminoacylation | 6.76E-04 |
| 35 | GO:0009944: polarity specification of adaxial/abaxial axis | 7.29E-04 |
| 36 | GO:0007005: mitochondrion organization | 9.58E-04 |
| 37 | GO:0007276: gamete generation | 9.65E-04 |
| 38 | GO:0009855: determination of bilateral symmetry | 9.65E-04 |
| 39 | GO:0051131: chaperone-mediated protein complex assembly | 9.65E-04 |
| 40 | GO:0009294: DNA mediated transformation | 1.04E-03 |
| 41 | GO:0009561: megagametogenesis | 1.13E-03 |
| 42 | GO:0006479: protein methylation | 1.28E-03 |
| 43 | GO:1900864: mitochondrial RNA modification | 1.28E-03 |
| 44 | GO:0046345: abscisic acid catabolic process | 1.28E-03 |
| 45 | GO:0042274: ribosomal small subunit biogenesis | 1.28E-03 |
| 46 | GO:0000460: maturation of 5.8S rRNA | 1.28E-03 |
| 47 | GO:0016569: covalent chromatin modification | 1.40E-03 |
| 48 | GO:0010197: polar nucleus fusion | 1.41E-03 |
| 49 | GO:0000380: alternative mRNA splicing, via spliceosome | 1.63E-03 |
| 50 | GO:0010375: stomatal complex patterning | 1.63E-03 |
| 51 | GO:0000470: maturation of LSU-rRNA | 2.01E-03 |
| 52 | GO:0016554: cytidine to uridine editing | 2.01E-03 |
| 53 | GO:0000741: karyogamy | 2.01E-03 |
| 54 | GO:0006458: 'de novo' protein folding | 2.41E-03 |
| 55 | GO:0048444: floral organ morphogenesis | 2.41E-03 |
| 56 | GO:0010077: maintenance of inflorescence meristem identity | 2.41E-03 |
| 57 | GO:0042026: protein refolding | 2.41E-03 |
| 58 | GO:0006400: tRNA modification | 2.83E-03 |
| 59 | GO:0010374: stomatal complex development | 2.83E-03 |
| 60 | GO:0045995: regulation of embryonic development | 2.83E-03 |
| 61 | GO:0080186: developmental vegetative growth | 2.83E-03 |
| 62 | GO:0042255: ribosome assembly | 3.28E-03 |
| 63 | GO:0009880: embryonic pattern specification | 3.75E-03 |
| 64 | GO:0006261: DNA-dependent DNA replication | 3.75E-03 |
| 65 | GO:2000024: regulation of leaf development | 4.25E-03 |
| 66 | GO:0006189: 'de novo' IMP biosynthetic process | 4.25E-03 |
| 67 | GO:0000387: spliceosomal snRNP assembly | 4.76E-03 |
| 68 | GO:1900865: chloroplast RNA modification | 4.76E-03 |
| 69 | GO:0030422: production of siRNA involved in RNA interference | 5.30E-03 |
| 70 | GO:0010582: floral meristem determinacy | 6.43E-03 |
| 71 | GO:0009793: embryo development ending in seed dormancy | 6.66E-03 |
| 72 | GO:0006626: protein targeting to mitochondrion | 7.03E-03 |
| 73 | GO:0010030: positive regulation of seed germination | 8.27E-03 |
| 74 | GO:0045892: negative regulation of transcription, DNA-templated | 8.88E-03 |
| 75 | GO:0006406: mRNA export from nucleus | 9.60E-03 |
| 76 | GO:0000027: ribosomal large subunit assembly | 9.60E-03 |
| 77 | GO:0030150: protein import into mitochondrial matrix | 9.60E-03 |
| 78 | GO:0046686: response to cadmium ion | 1.02E-02 |
| 79 | GO:0051302: regulation of cell division | 1.03E-02 |
| 80 | GO:0006396: RNA processing | 1.05E-02 |
| 81 | GO:0032259: methylation | 1.08E-02 |
| 82 | GO:0061077: chaperone-mediated protein folding | 1.10E-02 |
| 83 | GO:0000398: mRNA splicing, via spliceosome | 1.18E-02 |
| 84 | GO:0009693: ethylene biosynthetic process | 1.25E-02 |
| 85 | GO:0070417: cellular response to cold | 1.40E-02 |
| 86 | GO:0000413: protein peptidyl-prolyl isomerization | 1.48E-02 |
| 87 | GO:0009960: endosperm development | 1.56E-02 |
| 88 | GO:0048825: cotyledon development | 1.73E-02 |
| 89 | GO:0080156: mitochondrial mRNA modification | 1.81E-02 |
| 90 | GO:0009555: pollen development | 2.35E-02 |
| 91 | GO:0006974: cellular response to DNA damage stimulus | 2.55E-02 |
| 92 | GO:0016049: cell growth | 2.74E-02 |
| 93 | GO:0008219: cell death | 2.84E-02 |
| 94 | GO:0048527: lateral root development | 3.15E-02 |
| 95 | GO:0006457: protein folding | 3.24E-02 |
| 96 | GO:0006414: translational elongation | 3.86E-02 |
| 97 | GO:0000154: rRNA modification | 4.38E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 2 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 3 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 4 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 5 | GO:0034062: 5'-3' RNA polymerase activity | 0.00E+00 |
| 6 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 7 | GO:0003723: RNA binding | 4.43E-17 |
| 8 | GO:0000166: nucleotide binding | 5.47E-17 |
| 9 | GO:0030515: snoRNA binding | 9.28E-09 |
| 10 | GO:0004407: histone deacetylase activity | 8.48E-07 |
| 11 | GO:0008026: ATP-dependent helicase activity | 1.14E-06 |
| 12 | GO:0043021: ribonucleoprotein complex binding | 1.62E-06 |
| 13 | GO:0070181: small ribosomal subunit rRNA binding | 5.99E-06 |
| 14 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 7.47E-06 |
| 15 | GO:0004004: ATP-dependent RNA helicase activity | 2.03E-05 |
| 16 | GO:0003735: structural constituent of ribosome | 1.12E-04 |
| 17 | GO:0042134: rRNA primary transcript binding | 1.84E-04 |
| 18 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 1.84E-04 |
| 19 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.84E-04 |
| 20 | GO:0001054: RNA polymerase I activity | 3.60E-04 |
| 21 | GO:0044183: protein binding involved in protein folding | 3.60E-04 |
| 22 | GO:0003746: translation elongation factor activity | 4.90E-04 |
| 23 | GO:0004816: asparagine-tRNA ligase activity | 6.76E-04 |
| 24 | GO:0008168: methyltransferase activity | 9.20E-04 |
| 25 | GO:0048027: mRNA 5'-UTR binding | 9.65E-04 |
| 26 | GO:0003689: DNA clamp loader activity | 1.63E-03 |
| 27 | GO:0004519: endonuclease activity | 2.76E-03 |
| 28 | GO:0008173: RNA methyltransferase activity | 3.75E-03 |
| 29 | GO:0050897: cobalt ion binding | 3.76E-03 |
| 30 | GO:0001055: RNA polymerase II activity | 4.76E-03 |
| 31 | GO:0004521: endoribonuclease activity | 6.43E-03 |
| 32 | GO:0001056: RNA polymerase III activity | 6.43E-03 |
| 33 | GO:0009982: pseudouridine synthase activity | 7.03E-03 |
| 34 | GO:0003725: double-stranded RNA binding | 7.03E-03 |
| 35 | GO:0003676: nucleic acid binding | 7.34E-03 |
| 36 | GO:0051082: unfolded protein binding | 1.02E-02 |
| 37 | GO:0019843: rRNA binding | 1.28E-02 |
| 38 | GO:0004527: exonuclease activity | 1.56E-02 |
| 39 | GO:0003713: transcription coactivator activity | 1.56E-02 |
| 40 | GO:0016787: hydrolase activity | 1.77E-02 |
| 41 | GO:0016887: ATPase activity | 1.98E-02 |
| 42 | GO:0005524: ATP binding | 2.57E-02 |
| 43 | GO:0004721: phosphoprotein phosphatase activity | 2.64E-02 |
| 44 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.74E-02 |
| 45 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.84E-02 |
| 46 | GO:0003729: mRNA binding | 3.04E-02 |
| 47 | GO:0003697: single-stranded DNA binding | 3.36E-02 |
| 48 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.47E-02 |
| 49 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.50E-02 |
| 50 | GO:0003924: GTPase activity | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 0.00E+00 |
| 4 | GO:0036396: MIS complex | 0.00E+00 |
| 5 | GO:0070545: PeBoW complex | 0.00E+00 |
| 6 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 7 | GO:0005730: nucleolus | 3.70E-43 |
| 8 | GO:0032040: small-subunit processome | 8.40E-14 |
| 9 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 9.34E-12 |
| 10 | GO:0005634: nucleus | 1.61E-11 |
| 11 | GO:0005834: heterotrimeric G-protein complex | 2.42E-08 |
| 12 | GO:0030687: preribosome, large subunit precursor | 1.53E-06 |
| 13 | GO:0030688: preribosome, small subunit precursor | 1.84E-04 |
| 14 | GO:0005763: mitochondrial small ribosomal subunit | 2.21E-04 |
| 15 | GO:0005736: DNA-directed RNA polymerase I complex | 2.21E-04 |
| 16 | GO:0031429: box H/ACA snoRNP complex | 9.65E-04 |
| 17 | GO:0005663: DNA replication factor C complex | 1.28E-03 |
| 18 | GO:0005840: ribosome | 1.40E-03 |
| 19 | GO:0005654: nucleoplasm | 1.95E-03 |
| 20 | GO:0031428: box C/D snoRNP complex | 2.01E-03 |
| 21 | GO:0016363: nuclear matrix | 2.41E-03 |
| 22 | GO:0005759: mitochondrial matrix | 2.69E-03 |
| 23 | GO:0034399: nuclear periphery | 3.28E-03 |
| 24 | GO:0022627: cytosolic small ribosomal subunit | 4.32E-03 |
| 25 | GO:0005666: DNA-directed RNA polymerase III complex | 4.76E-03 |
| 26 | GO:0015030: Cajal body | 4.76E-03 |
| 27 | GO:0000418: DNA-directed RNA polymerase IV complex | 5.30E-03 |
| 28 | GO:0005665: DNA-directed RNA polymerase II, core complex | 6.43E-03 |
| 29 | GO:0019013: viral nucleocapsid | 7.03E-03 |
| 30 | GO:0009506: plasmodesma | 7.21E-03 |
| 31 | GO:0022625: cytosolic large ribosomal subunit | 7.38E-03 |
| 32 | GO:0005681: spliceosomal complex | 8.44E-03 |
| 33 | GO:0005747: mitochondrial respiratory chain complex I | 8.72E-03 |
| 34 | GO:0000419: DNA-directed RNA polymerase V complex | 8.93E-03 |
| 35 | GO:0005758: mitochondrial intermembrane space | 9.60E-03 |
| 36 | GO:0042651: thylakoid membrane | 1.03E-02 |
| 37 | GO:0005743: mitochondrial inner membrane | 1.04E-02 |
| 38 | GO:0015935: small ribosomal subunit | 1.10E-02 |
| 39 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.32E-02 |
| 40 | GO:0005618: cell wall | 1.88E-02 |
| 41 | GO:0005739: mitochondrion | 2.01E-02 |
| 42 | GO:0030529: intracellular ribonucleoprotein complex | 2.35E-02 |
| 43 | GO:0005829: cytosol | 2.82E-02 |
| 44 | GO:0015934: large ribosomal subunit | 3.15E-02 |
| 45 | GO:0005774: vacuolar membrane | 3.95E-02 |