co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0036172: thiamine salvage	0.00E+00
2	GO:0006720: isoprenoid metabolic process	0.00E+00
3	GO:0033365: protein localization to organelle	1.42E-06
4	GO:0048438: floral whorl development	1.87E-05
5	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.87E-05
6	GO:0016487: farnesol metabolic process	1.87E-05
7	GO:0016031: tRNA import into mitochondrion	1.87E-05
8	GO:0010220: positive regulation of vernalization response	4.85E-05
9	GO:0006546: glycine catabolic process	1.78E-04
10	GO:0019464: glycine decarboxylation via glycine cleavage system	1.78E-04
11	GO:0009229: thiamine diphosphate biosynthetic process	2.30E-04
12	GO:0009228: thiamine biosynthetic process	2.85E-04
13	GO:0000060: protein import into nucleus, translocation	2.85E-04
14	GO:0010076: maintenance of floral meristem identity	3.42E-04
15	GO:0010077: maintenance of inflorescence meristem identity	3.42E-04
16	GO:0080036: regulation of cytokinin-activated signaling pathway	3.42E-04
17	GO:0010161: red light signaling pathway	4.02E-04
18	GO:0000028: ribosomal small subunit assembly	4.64E-04
19	GO:0019430: removal of superoxide radicals	5.27E-04
20	GO:0098656: anion transmembrane transport	5.93E-04
21	GO:0010582: floral meristem determinacy	8.75E-04
22	GO:0009785: blue light signaling pathway	9.49E-04
23	GO:0048440: carpel development	1.02E-03
24	GO:0016226: iron-sulfur cluster assembly	1.52E-03
25	GO:0007005: mitochondrion organization	1.52E-03
26	GO:0015031: protein transport	1.70E-03
27	GO:0008654: phospholipid biosynthetic process	2.19E-03
28	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.29E-03
29	GO:0016126: sterol biosynthetic process	2.94E-03
30	GO:0000160: phosphorelay signal transduction system	3.63E-03
31	GO:0010043: response to zinc ion	3.88E-03
32	GO:0016310: phosphorylation	3.89E-03
33	GO:0009853: photorespiration	4.13E-03
34	GO:0045893: positive regulation of transcription, DNA-templated	5.05E-03
35	GO:0000165: MAPK cascade	5.60E-03
36	GO:0009736: cytokinin-activated signaling pathway	6.02E-03
37	GO:0009809: lignin biosynthetic process	6.02E-03
38	GO:0055114: oxidation-reduction process	8.76E-03
39	GO:0009739: response to gibberellin	1.22E-02
40	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	1.45E-02
41	GO:0009658: chloroplast organization	1.54E-02
42	GO:0009793: embryo development ending in seed dormancy	2.07E-02
43	GO:0006869: lipid transport	2.17E-02
44	GO:0008152: metabolic process	2.53E-02
45	GO:0055085: transmembrane transport	4.21E-02
46	GO:0006457: protein folding	4.27E-02

Rank	GO Term	Adjusted P value
1	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
2	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
3	GO:0052670: geraniol kinase activity	0.00E+00
4	GO:0052668: farnesol kinase activity	0.00E+00
5	GO:0052671: geranylgeraniol kinase activity	0.00E+00
6	GO:0015266: protein channel activity	1.71E-05
7	GO:0000254: C-4 methylsterol oxidase activity	1.30E-04
8	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.30E-04
9	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.72E-04
10	GO:0005496: steroid binding	2.30E-04
11	GO:0004784: superoxide dismutase activity	2.85E-04
12	GO:0004605: phosphatidate cytidylyltransferase activity	2.85E-04
13	GO:0043621: protein self-association	3.11E-04
14	GO:0009927: histidine phosphotransfer kinase activity	3.42E-04
15	GO:0008143: poly(A) binding	4.02E-04
16	GO:0016621: cinnamoyl-CoA reductase activity	4.02E-04
17	GO:0005315: inorganic phosphate transmembrane transporter activity	9.49E-04
18	GO:0043424: protein histidine kinase binding	1.35E-03
19	GO:0008514: organic anion transmembrane transporter activity	1.70E-03
20	GO:0050662: coenzyme binding	2.09E-03
21	GO:0048038: quinone binding	2.29E-03
22	GO:0016597: amino acid binding	2.82E-03
23	GO:0051537: 2 iron, 2 sulfur cluster binding	5.18E-03
24	GO:0005198: structural molecule activity	5.32E-03
25	GO:0005506: iron ion binding	8.75E-03
26	GO:0003824: catalytic activity	9.76E-03
27	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	9.85E-03
28	GO:0015144: carbohydrate transmembrane transporter activity	1.02E-02
29	GO:0005351: sugar:proton symporter activity	1.11E-02
30	GO:0016491: oxidoreductase activity	1.17E-02
31	GO:0046982: protein heterodimerization activity	1.52E-02
32	GO:0003723: RNA binding	1.69E-02
33	GO:0016787: hydrolase activity	1.91E-02
34	GO:0042803: protein homodimerization activity	2.10E-02
35	GO:0003924: GTPase activity	2.36E-02
36	GO:0016887: ATPase activity	3.23E-02
37	GO:0005507: copper ion binding	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0005747: mitochondrial respiratory chain complex I	1.87E-05
2	GO:0005744: mitochondrial inner membrane presequence translocase complex	5.15E-05
3	GO:0005960: glycine cleavage complex	1.30E-04
4	GO:0009527: plastid outer membrane	1.78E-04
5	GO:0009507: chloroplast	4.18E-04
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.93E-04
7	GO:0005763: mitochondrial small ribosomal subunit	5.93E-04
8	GO:0045271: respiratory chain complex I	1.35E-03
9	GO:0009536: plastid	1.62E-03
10	GO:0031969: chloroplast membrane	1.71E-03
11	GO:0009535: chloroplast thylakoid membrane	3.47E-03
12	GO:0005643: nuclear pore	3.51E-03
13	GO:0031966: mitochondrial membrane	5.74E-03
14	GO:0016607: nuclear speck	6.91E-03
15	GO:0016020: membrane	7.26E-03
16	GO:0012505: endomembrane system	7.53E-03
17	GO:0005759: mitochondrial matrix	1.06E-02
18	GO:0009570: chloroplast stroma	1.36E-02
19	GO:0016021: integral component of membrane	2.17E-02
20	GO:0009941: chloroplast envelope	4.19E-02