Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02720

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006114: glycerol biosynthetic process0.00E+00
2GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
3GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0009715: chalcone biosynthetic process0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0042820: vitamin B6 catabolic process0.00E+00
9GO:0015882: L-ascorbic acid transport0.00E+00
10GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
11GO:0015979: photosynthesis3.02E-12
12GO:0018298: protein-chromophore linkage1.21E-10
13GO:0090391: granum assembly2.56E-08
14GO:0009768: photosynthesis, light harvesting in photosystem I8.42E-08
15GO:0006021: inositol biosynthetic process3.62E-07
16GO:0042549: photosystem II stabilization1.59E-06
17GO:0010027: thylakoid membrane organization2.28E-06
18GO:0010196: nonphotochemical quenching4.46E-06
19GO:0009642: response to light intensity6.75E-06
20GO:0005977: glycogen metabolic process1.31E-05
21GO:0010114: response to red light1.60E-05
22GO:0009773: photosynthetic electron transport in photosystem I3.07E-05
23GO:0010021: amylopectin biosynthetic process5.29E-05
24GO:0009765: photosynthesis, light harvesting5.29E-05
25GO:0010207: photosystem II assembly5.78E-05
26GO:0046855: inositol phosphate dephosphorylation1.22E-04
27GO:0009637: response to blue light1.24E-04
28GO:0009645: response to low light intensity stimulus2.19E-04
29GO:0048564: photosystem I assembly2.76E-04
30GO:1904964: positive regulation of phytol biosynthetic process2.82E-04
31GO:0006474: N-terminal protein amino acid acetylation2.82E-04
32GO:0071277: cellular response to calcium ion2.82E-04
33GO:0017198: N-terminal peptidyl-serine acetylation2.82E-04
34GO:0065002: intracellular protein transmembrane transport2.82E-04
35GO:0043686: co-translational protein modification2.82E-04
36GO:0043007: maintenance of rDNA2.82E-04
37GO:0010028: xanthophyll cycle2.82E-04
38GO:0034337: RNA folding2.82E-04
39GO:0006419: alanyl-tRNA aminoacylation2.82E-04
40GO:0010362: negative regulation of anion channel activity by blue light2.82E-04
41GO:0000476: maturation of 4.5S rRNA2.82E-04
42GO:0009443: pyridoxal 5'-phosphate salvage2.82E-04
43GO:0018002: N-terminal peptidyl-glutamic acid acetylation2.82E-04
44GO:0000967: rRNA 5'-end processing2.82E-04
45GO:1904966: positive regulation of vitamin E biosynthetic process2.82E-04
46GO:0043953: protein transport by the Tat complex2.82E-04
47GO:0006475: internal protein amino acid acetylation2.82E-04
48GO:0033388: putrescine biosynthetic process from arginine2.82E-04
49GO:0000481: maturation of 5S rRNA2.82E-04
50GO:0009657: plastid organization3.40E-04
51GO:0010206: photosystem II repair4.10E-04
52GO:0055114: oxidation-reduction process4.20E-04
53GO:0010205: photoinhibition4.86E-04
54GO:0009446: putrescine biosynthetic process6.19E-04
55GO:0010155: regulation of proton transport6.19E-04
56GO:0006729: tetrahydrobiopterin biosynthetic process6.19E-04
57GO:0034470: ncRNA processing6.19E-04
58GO:0035304: regulation of protein dephosphorylation6.19E-04
59GO:0009629: response to gravity6.19E-04
60GO:1902326: positive regulation of chlorophyll biosynthetic process6.19E-04
61GO:0030187: melatonin biosynthetic process6.19E-04
62GO:0006432: phenylalanyl-tRNA aminoacylation6.19E-04
63GO:0018026: peptidyl-lysine monomethylation6.19E-04
64GO:0000256: allantoin catabolic process6.19E-04
65GO:0006435: threonyl-tRNA aminoacylation6.19E-04
66GO:0043085: positive regulation of catalytic activity6.54E-04
67GO:0016311: dephosphorylation7.33E-04
68GO:0006790: sulfur compound metabolic process7.47E-04
69GO:0010218: response to far red light8.83E-04
70GO:0009793: embryo development ending in seed dormancy9.91E-04
71GO:0010136: ureide catabolic process1.00E-03
72GO:0009405: pathogenesis1.00E-03
73GO:0046854: phosphatidylinositol phosphorylation1.06E-03
74GO:0019853: L-ascorbic acid biosynthetic process1.06E-03
75GO:0034599: cellular response to oxidative stress1.11E-03
76GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.44E-03
77GO:0006020: inositol metabolic process1.44E-03
78GO:0009052: pentose-phosphate shunt, non-oxidative branch1.44E-03
79GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.44E-03
80GO:0006145: purine nucleobase catabolic process1.44E-03
81GO:0046739: transport of virus in multicellular host1.44E-03
82GO:0051016: barbed-end actin filament capping1.44E-03
83GO:0042989: sequestering of actin monomers1.44E-03
84GO:0042823: pyridoxal phosphate biosynthetic process1.44E-03
85GO:0009644: response to high light intensity1.59E-03
86GO:0006012: galactose metabolic process1.88E-03
87GO:0006109: regulation of carbohydrate metabolic process1.92E-03
88GO:0015994: chlorophyll metabolic process1.92E-03
89GO:0006656: phosphatidylcholine biosynthetic process2.46E-03
90GO:0031365: N-terminal protein amino acid modification2.46E-03
91GO:0016123: xanthophyll biosynthetic process2.46E-03
92GO:0016558: protein import into peroxisome matrix2.46E-03
93GO:0030041: actin filament polymerization2.46E-03
94GO:0006564: L-serine biosynthetic process2.46E-03
95GO:0009904: chloroplast accumulation movement2.46E-03
96GO:0009658: chloroplast organization2.47E-03
97GO:0006662: glycerol ether metabolic process2.58E-03
98GO:0019252: starch biosynthetic process2.97E-03
99GO:0008654: phospholipid biosynthetic process2.97E-03
100GO:0050665: hydrogen peroxide biosynthetic process3.03E-03
101GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.03E-03
102GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.03E-03
103GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.03E-03
104GO:0042793: transcription from plastid promoter3.03E-03
105GO:0005975: carbohydrate metabolic process3.26E-03
106GO:0080167: response to karrikin3.42E-03
107GO:0006396: RNA processing3.42E-03
108GO:0010189: vitamin E biosynthetic process3.65E-03
109GO:0009854: oxidative photosynthetic carbon pathway3.65E-03
110GO:0071470: cellular response to osmotic stress3.65E-03
111GO:0009903: chloroplast avoidance movement3.65E-03
112GO:0030488: tRNA methylation3.65E-03
113GO:1900057: positive regulation of leaf senescence4.30E-03
114GO:0009769: photosynthesis, light harvesting in photosystem II4.30E-03
115GO:0006400: tRNA modification4.30E-03
116GO:0051510: regulation of unidimensional cell growth4.30E-03
117GO:0045454: cell redox homeostasis4.50E-03
118GO:0031540: regulation of anthocyanin biosynthetic process4.99E-03
119GO:0016559: peroxisome fission4.99E-03
120GO:0030091: protein repair4.99E-03
121GO:0009704: de-etiolation4.99E-03
122GO:0032508: DNA duplex unwinding4.99E-03
123GO:0015995: chlorophyll biosynthetic process5.40E-03
124GO:0017004: cytochrome complex assembly5.72E-03
125GO:0006413: translational initiation6.04E-03
126GO:0098656: anion transmembrane transport6.48E-03
127GO:0009821: alkaloid biosynthetic process6.48E-03
128GO:0090333: regulation of stomatal closure6.48E-03
129GO:0006754: ATP biosynthetic process6.48E-03
130GO:0009638: phototropism7.28E-03
131GO:0009688: abscisic acid biosynthetic process8.11E-03
132GO:0006949: syncytium formation8.11E-03
133GO:0006415: translational termination8.97E-03
134GO:0019684: photosynthesis, light reaction8.97E-03
135GO:0009698: phenylpropanoid metabolic process8.97E-03
136GO:0006810: transport9.19E-03
137GO:0006807: nitrogen compound metabolic process1.08E-02
138GO:0009785: blue light signaling pathway1.08E-02
139GO:0006006: glucose metabolic process1.08E-02
140GO:0019253: reductive pentose-phosphate cycle1.18E-02
141GO:0010020: chloroplast fission1.18E-02
142GO:0090351: seedling development1.28E-02
143GO:0010030: positive regulation of seed germination1.28E-02
144GO:0006863: purine nucleobase transport1.38E-02
145GO:0006833: water transport1.38E-02
146GO:0009863: salicylic acid mediated signaling pathway1.48E-02
147GO:0007010: cytoskeleton organization1.48E-02
148GO:0019953: sexual reproduction1.59E-02
149GO:0008299: isoprenoid biosynthetic process1.59E-02
150GO:0048511: rhythmic process1.70E-02
151GO:0019915: lipid storage1.70E-02
152GO:0009269: response to desiccation1.70E-02
153GO:0019748: secondary metabolic process1.81E-02
154GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.93E-02
155GO:0009561: megagametogenesis2.05E-02
156GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.17E-02
157GO:0034220: ion transmembrane transport2.29E-02
158GO:0042631: cellular response to water deprivation2.29E-02
159GO:0009409: response to cold2.32E-02
160GO:0010182: sugar mediated signaling pathway2.42E-02
161GO:0048868: pollen tube development2.42E-02
162GO:0009408: response to heat2.48E-02
163GO:0006814: sodium ion transport2.54E-02
164GO:0042752: regulation of circadian rhythm2.54E-02
165GO:0009845: seed germination2.56E-02
166GO:0009791: post-embryonic development2.67E-02
167GO:0006635: fatty acid beta-oxidation2.81E-02
168GO:0071554: cell wall organization or biogenesis2.81E-02
169GO:0016032: viral process2.94E-02
170GO:0046686: response to cadmium ion2.94E-02
171GO:1901657: glycosyl compound metabolic process3.08E-02
172GO:0009828: plant-type cell wall loosening3.22E-02
173GO:0009567: double fertilization forming a zygote and endosperm3.22E-02
174GO:0007623: circadian rhythm3.27E-02
175GO:0051607: defense response to virus3.50E-02
176GO:0009627: systemic acquired resistance3.95E-02
177GO:0042128: nitrate assimilation3.95E-02
178GO:0009817: defense response to fungus, incompatible interaction4.41E-02
179GO:0009735: response to cytokinin4.50E-02
180GO:0000160: phosphorelay signal transduction system4.56E-02
181GO:0009813: flavonoid biosynthetic process4.56E-02
182GO:0006811: ion transport4.72E-02
183GO:0007568: aging4.88E-02
184GO:0048527: lateral root development4.88E-02
185GO:0010119: regulation of stomatal movement4.88E-02
RankGO TermAdjusted P value
1GO:0050126: N-carbamoylputrescine amidase activity0.00E+00
2GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
5GO:0050281: serine-glyoxylate transaminase activity0.00E+00
6GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
7GO:0043136: glycerol-3-phosphatase activity0.00E+00
8GO:0000121: glycerol-1-phosphatase activity0.00E+00
9GO:0010349: L-galactose dehydrogenase activity0.00E+00
10GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
11GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
12GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
13GO:0016210: naringenin-chalcone synthase activity0.00E+00
14GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
15GO:0010276: phytol kinase activity0.00E+00
16GO:0015229: L-ascorbic acid transporter activity0.00E+00
17GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
18GO:0004760: serine-pyruvate transaminase activity0.00E+00
19GO:0042623: ATPase activity, coupled0.00E+00
20GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
21GO:0031409: pigment binding4.62E-08
22GO:0016168: chlorophyll binding8.53E-08
23GO:0052832: inositol monophosphate 3-phosphatase activity3.65E-06
24GO:0019156: isoamylase activity3.65E-06
25GO:0008934: inositol monophosphate 1-phosphatase activity3.65E-06
26GO:0052833: inositol monophosphate 4-phosphatase activity3.65E-06
27GO:0070402: NADPH binding1.31E-05
28GO:0031072: heat shock protein binding4.75E-05
29GO:0004556: alpha-amylase activity1.22E-04
30GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.67E-04
31GO:0004033: aldo-keto reductase (NADP) activity2.76E-04
32GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.82E-04
33GO:0010347: L-galactose-1-phosphate phosphatase activity2.82E-04
34GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.82E-04
35GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.82E-04
36GO:1990189: peptide-serine-N-acetyltransferase activity2.82E-04
37GO:0004813: alanine-tRNA ligase activity2.82E-04
38GO:0010242: oxygen evolving activity2.82E-04
39GO:1990190: peptide-glutamate-N-acetyltransferase activity2.82E-04
40GO:0042586: peptide deformylase activity2.82E-04
41GO:0042802: identical protein binding3.57E-04
42GO:0008047: enzyme activator activity5.67E-04
43GO:0047746: chlorophyllase activity6.19E-04
44GO:0009977: proton motive force dependent protein transmembrane transporter activity6.19E-04
45GO:0004617: phosphoglycerate dehydrogenase activity6.19E-04
46GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.19E-04
47GO:0004829: threonine-tRNA ligase activity6.19E-04
48GO:0004826: phenylalanine-tRNA ligase activity6.19E-04
49GO:0004512: inositol-3-phosphate synthase activity6.19E-04
50GO:0000234: phosphoethanolamine N-methyltransferase activity6.19E-04
51GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.19E-04
52GO:0000049: tRNA binding7.47E-04
53GO:0046872: metal ion binding9.23E-04
54GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.00E-03
55GO:0003913: DNA photolyase activity1.00E-03
56GO:0004751: ribose-5-phosphate isomerase activity1.00E-03
57GO:0009882: blue light photoreceptor activity1.44E-03
58GO:0008508: bile acid:sodium symporter activity1.44E-03
59GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.44E-03
60GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.44E-03
61GO:0004792: thiosulfate sulfurtransferase activity1.44E-03
62GO:0016149: translation release factor activity, codon specific1.44E-03
63GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.44E-03
64GO:0008891: glycolate oxidase activity1.92E-03
65GO:0016279: protein-lysine N-methyltransferase activity1.92E-03
66GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.92E-03
67GO:0008453: alanine-glyoxylate transaminase activity1.92E-03
68GO:0004045: aminoacyl-tRNA hydrolase activity1.92E-03
69GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.92E-03
70GO:0043495: protein anchor1.92E-03
71GO:0047134: protein-disulfide reductase activity2.21E-03
72GO:0003785: actin monomer binding2.46E-03
73GO:0008080: N-acetyltransferase activity2.58E-03
74GO:0004791: thioredoxin-disulfide reductase activity2.77E-03
75GO:0016853: isomerase activity2.77E-03
76GO:0010181: FMN binding2.77E-03
77GO:0004605: phosphatidate cytidylyltransferase activity3.03E-03
78GO:0004462: lactoylglutathione lyase activity3.03E-03
79GO:0000293: ferric-chelate reductase activity3.03E-03
80GO:0051082: unfolded protein binding3.29E-03
81GO:0015035: protein disulfide oxidoreductase activity3.42E-03
82GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.62E-03
83GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.65E-03
84GO:0009881: photoreceptor activity4.30E-03
85GO:0019899: enzyme binding4.30E-03
86GO:0016597: amino acid binding4.33E-03
87GO:0004034: aldose 1-epimerase activity4.99E-03
88GO:0008135: translation factor activity, RNA binding5.72E-03
89GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity5.72E-03
90GO:0103095: wax ester synthase activity5.72E-03
91GO:0008173: RNA methyltransferase activity5.72E-03
92GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.48E-03
93GO:0003747: translation release factor activity6.48E-03
94GO:0071949: FAD binding6.48E-03
95GO:0030145: manganese ion binding6.92E-03
96GO:0016844: strictosidine synthase activity7.28E-03
97GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.28E-03
98GO:0016491: oxidoreductase activity7.43E-03
99GO:0003993: acid phosphatase activity7.94E-03
100GO:0004185: serine-type carboxypeptidase activity9.80E-03
101GO:0000155: phosphorelay sensor kinase activity1.08E-02
102GO:0004565: beta-galactosidase activity1.08E-02
103GO:0008081: phosphoric diester hydrolase activity1.08E-02
104GO:0005315: inorganic phosphate transmembrane transporter activity1.08E-02
105GO:0005198: structural molecule activity1.10E-02
106GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.14E-02
107GO:0008266: poly(U) RNA binding1.18E-02
108GO:0051287: NAD binding1.19E-02
109GO:0004857: enzyme inhibitor activity1.48E-02
110GO:0005528: FK506 binding1.48E-02
111GO:0005345: purine nucleobase transmembrane transporter activity1.59E-02
112GO:0003779: actin binding1.83E-02
113GO:0022891: substrate-specific transmembrane transporter activity1.93E-02
114GO:0016746: transferase activity, transferring acyl groups1.95E-02
115GO:0003727: single-stranded RNA binding2.05E-02
116GO:0008514: organic anion transmembrane transporter activity2.05E-02
117GO:0003756: protein disulfide isomerase activity2.05E-02
118GO:0003924: GTPase activity2.48E-02
119GO:0009055: electron carrier activity2.70E-02
120GO:0048038: quinone binding2.81E-02
121GO:0016413: O-acetyltransferase activity3.50E-02
122GO:0015250: water channel activity3.65E-02
123GO:0005509: calcium ion binding3.72E-02
124GO:0003743: translation initiation factor activity3.81E-02
125GO:0102483: scopolin beta-glucosidase activity4.10E-02
126GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.25E-02
127GO:0016787: hydrolase activity4.94E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0010368: chloroplast isoamylase complex0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0009507: chloroplast8.32E-55
5GO:0009535: chloroplast thylakoid membrane3.51E-38
6GO:0009534: chloroplast thylakoid1.64E-33
7GO:0009570: chloroplast stroma1.70E-19
8GO:0009579: thylakoid1.25E-16
9GO:0009941: chloroplast envelope2.66E-15
10GO:0009543: chloroplast thylakoid lumen6.73E-11
11GO:0010287: plastoglobule1.33E-09
12GO:0031977: thylakoid lumen2.30E-08
13GO:0009523: photosystem II6.86E-07
14GO:0030095: chloroplast photosystem II1.52E-06
15GO:0009654: photosystem II oxygen evolving complex4.08E-06
16GO:0009538: photosystem I reaction center6.75E-06
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.36E-05
18GO:0009522: photosystem I1.74E-05
19GO:0019898: extrinsic component of membrane2.01E-05
20GO:0030076: light-harvesting complex6.92E-05
21GO:0031361: integral component of thylakoid membrane2.82E-04
22GO:0009782: photosystem I antenna complex2.82E-04
23GO:0009783: photosystem II antenna complex2.82E-04
24GO:0008290: F-actin capping protein complex6.19E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex6.19E-04
26GO:0031415: NatA complex6.19E-04
27GO:0009508: plastid chromosome8.46E-04
28GO:0033281: TAT protein transport complex1.00E-03
29GO:0009898: cytoplasmic side of plasma membrane1.92E-03
30GO:0009517: PSII associated light-harvesting complex II1.92E-03
31GO:0016020: membrane2.42E-03
32GO:0031969: chloroplast membrane3.42E-03
33GO:0009295: nucleoid4.08E-03
34GO:0009986: cell surface4.30E-03
35GO:0009533: chloroplast stromal thylakoid4.30E-03
36GO:0008180: COP9 signalosome6.48E-03
37GO:0012511: monolayer-surrounded lipid storage body8.97E-03
38GO:0032040: small-subunit processome9.88E-03
39GO:0005938: cell cortex1.08E-02
40GO:0042651: thylakoid membrane1.59E-02
41GO:0009706: chloroplast inner membrane1.89E-02
42GO:0016021: integral component of membrane1.89E-02
43GO:0015629: actin cytoskeleton1.93E-02
44GO:0005623: cell2.43E-02
45GO:0005778: peroxisomal membrane3.36E-02
46GO:0030529: intracellular ribonucleoprotein complex3.65E-02
47GO:0019005: SCF ubiquitin ligase complex4.41E-02
48GO:0009707: chloroplast outer membrane4.41E-02
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Gene type



Gene DE type