Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019685: photosynthesis, dark reaction0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0098586: cellular response to virus0.00E+00
4GO:0042304: regulation of fatty acid biosynthetic process0.00E+00
5GO:0033231: carbohydrate export0.00E+00
6GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
7GO:0090470: shoot organ boundary specification0.00E+00
8GO:0007037: vacuolar phosphate transport0.00E+00
9GO:0017009: protein-phycocyanobilin linkage0.00E+00
10GO:1901965: endoplasmic reticulum to chloroplast transport0.00E+00
11GO:0018316: peptide cross-linking via L-cystine0.00E+00
12GO:0009661: chromoplast organization0.00E+00
13GO:0005997: xylulose metabolic process0.00E+00
14GO:0051246: regulation of protein metabolic process0.00E+00
15GO:2000013: regulation of arginine biosynthetic process via ornithine0.00E+00
16GO:0009658: chloroplast organization6.25E-07
17GO:0016120: carotene biosynthetic process2.28E-06
18GO:0010190: cytochrome b6f complex assembly4.36E-06
19GO:0080005: photosystem stoichiometry adjustment7.70E-06
20GO:0000256: allantoin catabolic process7.70E-06
21GO:0048564: photosystem I assembly1.77E-05
22GO:0071482: cellular response to light stimulus2.53E-05
23GO:0010136: ureide catabolic process2.66E-05
24GO:0006013: mannose metabolic process2.66E-05
25GO:0006145: purine nucleobase catabolic process5.79E-05
26GO:2001141: regulation of RNA biosynthetic process5.79E-05
27GO:0009767: photosynthetic electron transport chain1.13E-04
28GO:0010027: thylakoid membrane organization1.39E-04
29GO:0080065: 4-alpha-methyl-delta7-sterol oxidation4.15E-04
30GO:1902334: fructose export from vacuole to cytoplasm4.15E-04
31GO:0010362: negative regulation of anion channel activity by blue light4.15E-04
32GO:0019343: cysteine biosynthetic process via cystathionine4.15E-04
33GO:0015755: fructose transport4.15E-04
34GO:0019646: aerobic electron transport chain4.15E-04
35GO:0031426: polycistronic mRNA processing4.15E-04
36GO:0071266: 'de novo' L-methionine biosynthetic process4.15E-04
37GO:0046900: tetrahydrofolylpolyglutamate metabolic process4.15E-04
38GO:1904966: positive regulation of vitamin E biosynthetic process4.15E-04
39GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.15E-04
40GO:1990052: ER to chloroplast lipid transport4.15E-04
41GO:0071806: protein transmembrane transport4.15E-04
42GO:0019346: transsulfuration4.15E-04
43GO:1904964: positive regulation of phytol biosynthetic process4.15E-04
44GO:0042371: vitamin K biosynthetic process4.15E-04
45GO:0071454: cellular response to anoxia4.15E-04
46GO:0071461: cellular response to redox state4.15E-04
47GO:0006436: tryptophanyl-tRNA aminoacylation4.15E-04
48GO:0006430: lysyl-tRNA aminoacylation4.15E-04
49GO:0016117: carotenoid biosynthetic process4.50E-04
50GO:0009657: plastid organization5.98E-04
51GO:1900426: positive regulation of defense response to bacterium8.44E-04
52GO:0080185: effector dependent induction by symbiont of host immune response8.99E-04
53GO:0010275: NAD(P)H dehydrogenase complex assembly8.99E-04
54GO:0010343: singlet oxygen-mediated programmed cell death8.99E-04
55GO:0046741: transport of virus in host, tissue to tissue8.99E-04
56GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole8.99E-04
57GO:0060359: response to ammonium ion8.99E-04
58GO:0048255: mRNA stabilization8.99E-04
59GO:0048314: embryo sac morphogenesis8.99E-04
60GO:1902326: positive regulation of chlorophyll biosynthetic process8.99E-04
61GO:0034755: iron ion transmembrane transport8.99E-04
62GO:0006435: threonyl-tRNA aminoacylation8.99E-04
63GO:1904143: positive regulation of carotenoid biosynthetic process8.99E-04
64GO:0080183: response to photooxidative stress8.99E-04
65GO:0080153: negative regulation of reductive pentose-phosphate cycle8.99E-04
66GO:0006352: DNA-templated transcription, initiation1.13E-03
67GO:0015995: chlorophyll biosynthetic process1.40E-03
68GO:0002230: positive regulation of defense response to virus by host1.46E-03
69GO:0009150: purine ribonucleotide metabolic process1.46E-03
70GO:1901672: positive regulation of systemic acquired resistance1.46E-03
71GO:0051604: protein maturation1.46E-03
72GO:0006696: ergosterol biosynthetic process1.46E-03
73GO:0071836: nectar secretion1.46E-03
74GO:0043157: response to cation stress1.46E-03
75GO:0005986: sucrose biosynthetic process1.47E-03
76GO:0018298: protein-chromophore linkage1.59E-03
77GO:0010207: photosystem II assembly1.65E-03
78GO:0090351: seedling development1.85E-03
79GO:0007568: aging1.92E-03
80GO:0071484: cellular response to light intensity2.11E-03
81GO:0010239: chloroplast mRNA processing2.11E-03
82GO:0033014: tetrapyrrole biosynthetic process2.11E-03
83GO:0090307: mitotic spindle assembly2.11E-03
84GO:0006809: nitric oxide biosynthetic process2.11E-03
85GO:0050482: arachidonic acid secretion2.11E-03
86GO:0043572: plastid fission2.11E-03
87GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.11E-03
88GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.11E-03
89GO:0010371: regulation of gibberellin biosynthetic process2.11E-03
90GO:0006418: tRNA aminoacylation for protein translation2.53E-03
91GO:0007017: microtubule-based process2.53E-03
92GO:0015743: malate transport2.84E-03
93GO:0042274: ribosomal small subunit biogenesis2.84E-03
94GO:0031935: regulation of chromatin silencing2.84E-03
95GO:0009765: photosynthesis, light harvesting2.84E-03
96GO:0031122: cytoplasmic microtubule organization2.84E-03
97GO:0006552: leucine catabolic process2.84E-03
98GO:0009902: chloroplast relocation2.84E-03
99GO:0010021: amylopectin biosynthetic process2.84E-03
100GO:0006808: regulation of nitrogen utilization2.84E-03
101GO:0055114: oxidation-reduction process2.97E-03
102GO:0009744: response to sucrose2.98E-03
103GO:0016226: iron-sulfur cluster assembly3.04E-03
104GO:0009644: response to high light intensity3.30E-03
105GO:0016123: xanthophyll biosynthetic process3.63E-03
106GO:0000304: response to singlet oxygen3.63E-03
107GO:0034052: positive regulation of plant-type hypersensitive response3.63E-03
108GO:0010117: photoprotection3.63E-03
109GO:0045038: protein import into chloroplast thylakoid membrane3.63E-03
110GO:0006282: regulation of DNA repair3.63E-03
111GO:0006508: proteolysis3.71E-03
112GO:0070417: cellular response to cold3.91E-03
113GO:0009959: negative gravitropism4.49E-03
114GO:0006555: methionine metabolic process4.49E-03
115GO:0009643: photosynthetic acclimation4.49E-03
116GO:0000741: karyogamy4.49E-03
117GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione4.49E-03
118GO:0010304: PSII associated light-harvesting complex II catabolic process4.49E-03
119GO:0009791: post-embryonic development5.26E-03
120GO:0019509: L-methionine salvage from methylthioadenosine5.42E-03
121GO:0042372: phylloquinone biosynthetic process5.42E-03
122GO:0010019: chloroplast-nucleus signaling pathway5.42E-03
123GO:0048528: post-embryonic root development6.41E-03
124GO:1900056: negative regulation of leaf senescence6.41E-03
125GO:0010038: response to metal ion6.41E-03
126GO:0006644: phospholipid metabolic process7.45E-03
127GO:0030091: protein repair7.45E-03
128GO:0006605: protein targeting7.45E-03
129GO:0042255: ribosome assembly7.45E-03
130GO:0009704: de-etiolation7.45E-03
131GO:0006353: DNA-templated transcription, termination7.45E-03
132GO:0050821: protein stabilization7.45E-03
133GO:0000105: histidine biosynthetic process7.45E-03
134GO:0006102: isocitrate metabolic process7.45E-03
135GO:0032544: plastid translation8.55E-03
136GO:0009816: defense response to bacterium, incompatible interaction8.64E-03
137GO:0009821: alkaloid biosynthetic process9.71E-03
138GO:0090305: nucleic acid phosphodiester bond hydrolysis9.71E-03
139GO:0048507: meristem development9.71E-03
140GO:0006783: heme biosynthetic process9.71E-03
141GO:0015979: photosynthesis1.01E-02
142GO:0048481: plant ovule development1.07E-02
143GO:0009638: phototropism1.09E-02
144GO:0006779: porphyrin-containing compound biosynthetic process1.09E-02
145GO:0010380: regulation of chlorophyll biosynthetic process1.09E-02
146GO:0009416: response to light stimulus1.12E-02
147GO:0006811: ion transport1.18E-02
148GO:0006259: DNA metabolic process1.22E-02
149GO:0051555: flavonol biosynthetic process1.22E-02
150GO:0006995: cellular response to nitrogen starvation1.22E-02
151GO:0045036: protein targeting to chloroplast1.22E-02
152GO:0006265: DNA topological change1.35E-02
153GO:0009773: photosynthetic electron transport in photosystem I1.35E-02
154GO:0043085: positive regulation of catalytic activity1.35E-02
155GO:0008285: negative regulation of cell proliferation1.35E-02
156GO:1903507: negative regulation of nucleic acid-templated transcription1.35E-02
157GO:0006879: cellular iron ion homeostasis1.35E-02
158GO:0009750: response to fructose1.35E-02
159GO:0007623: circadian rhythm1.38E-02
160GO:0006790: sulfur compound metabolic process1.49E-02
161GO:0006807: nitrogen compound metabolic process1.63E-02
162GO:0009718: anthocyanin-containing compound biosynthetic process1.63E-02
163GO:0009725: response to hormone1.63E-02
164GO:0055085: transmembrane transport1.68E-02
165GO:0034605: cellular response to heat1.77E-02
166GO:0006541: glutamine metabolic process1.77E-02
167GO:0010020: chloroplast fission1.77E-02
168GO:0019253: reductive pentose-phosphate cycle1.77E-02
169GO:0006071: glycerol metabolic process2.08E-02
170GO:0031347: regulation of defense response2.13E-02
171GO:0006364: rRNA processing2.37E-02
172GO:0051302: regulation of cell division2.40E-02
173GO:0010073: meristem maintenance2.40E-02
174GO:0051321: meiotic cell cycle2.57E-02
175GO:0006366: transcription from RNA polymerase II promoter2.57E-02
176GO:0016998: cell wall macromolecule catabolic process2.57E-02
177GO:0051260: protein homooligomerization2.57E-02
178GO:0006417: regulation of translation2.62E-02
179GO:2000022: regulation of jasmonic acid mediated signaling pathway2.74E-02
180GO:0080092: regulation of pollen tube growth2.74E-02
181GO:0009793: embryo development ending in seed dormancy2.75E-02
182GO:0010227: floral organ abscission2.91E-02
183GO:0006817: phosphate ion transport3.09E-02
184GO:0042335: cuticle development3.46E-02
185GO:0008033: tRNA processing3.46E-02
186GO:0010118: stomatal movement3.46E-02
187GO:0006662: glycerol ether metabolic process3.65E-02
188GO:0010197: polar nucleus fusion3.65E-02
189GO:0009646: response to absence of light3.85E-02
190GO:0006814: sodium ion transport3.85E-02
191GO:0007059: chromosome segregation3.85E-02
192GO:0019252: starch biosynthetic process4.04E-02
193GO:0000302: response to reactive oxygen species4.24E-02
194GO:0010193: response to ozone4.24E-02
195GO:0007264: small GTPase mediated signal transduction4.44E-02
196GO:0031047: gene silencing by RNA4.44E-02
197GO:0032502: developmental process4.44E-02
198GO:0009630: gravitropism4.44E-02
199GO:0030163: protein catabolic process4.65E-02
200GO:0006464: cellular protein modification process4.86E-02
RankGO TermAdjusted P value
1GO:0045436: lycopene beta cyclase activity0.00E+00
2GO:0010307: acetylglutamate kinase regulator activity0.00E+00
3GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
4GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
7GO:0046905: phytoene synthase activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0015284: fructose uniporter activity0.00E+00
10GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
11GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
12GO:0016491: oxidoreductase activity2.27E-05
13GO:0004180: carboxypeptidase activity2.66E-05
14GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.66E-05
15GO:0004848: ureidoglycolate hydrolase activity2.66E-05
16GO:0016851: magnesium chelatase activity5.79E-05
17GO:0016987: sigma factor activity1.02E-04
18GO:0001053: plastid sigma factor activity1.02E-04
19GO:0004176: ATP-dependent peptidase activity2.85E-04
20GO:0004559: alpha-mannosidase activity3.03E-04
21GO:0019899: enzyme binding3.92E-04
22GO:0046906: tetrapyrrole binding4.15E-04
23GO:0004824: lysine-tRNA ligase activity4.15E-04
24GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity4.15E-04
25GO:0004856: xylulokinase activity4.15E-04
26GO:0016783: sulfurtransferase activity4.15E-04
27GO:0008242: omega peptidase activity4.15E-04
28GO:0004325: ferrochelatase activity4.15E-04
29GO:0004121: cystathionine beta-lyase activity4.15E-04
30GO:0051996: squalene synthase activity4.15E-04
31GO:0004830: tryptophan-tRNA ligase activity4.15E-04
32GO:0003879: ATP phosphoribosyltransferase activity4.15E-04
33GO:0030941: chloroplast targeting sequence binding4.15E-04
34GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.15E-04
35GO:0004485: methylcrotonoyl-CoA carboxylase activity4.15E-04
36GO:0004123: cystathionine gamma-lyase activity4.15E-04
37GO:0035671: enone reductase activity4.15E-04
38GO:0048038: quinone binding7.18E-04
39GO:0004047: aminomethyltransferase activity8.99E-04
40GO:0033201: alpha-1,4-glucan synthase activity8.99E-04
41GO:0004829: threonine-tRNA ligase activity8.99E-04
42GO:0005353: fructose transmembrane transporter activity8.99E-04
43GO:0034722: gamma-glutamyl-peptidase activity8.99E-04
44GO:0004046: aminoacylase activity8.99E-04
45GO:0004450: isocitrate dehydrogenase (NADP+) activity8.99E-04
46GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.99E-04
47GO:0015367: oxoglutarate:malate antiporter activity8.99E-04
48GO:0008237: metallopeptidase activity9.86E-04
49GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.46E-03
50GO:0010277: chlorophyllide a oxygenase [overall] activity1.46E-03
51GO:0046524: sucrose-phosphate synthase activity1.46E-03
52GO:0004373: glycogen (starch) synthase activity1.46E-03
53GO:0003962: cystathionine gamma-synthase activity1.46E-03
54GO:0003913: DNA photolyase activity1.46E-03
55GO:0032947: protein complex scaffold1.46E-03
56GO:0050307: sucrose-phosphate phosphatase activity1.46E-03
57GO:0004148: dihydrolipoyl dehydrogenase activity1.46E-03
58GO:0004075: biotin carboxylase activity1.46E-03
59GO:0008236: serine-type peptidase activity1.50E-03
60GO:0004222: metalloendopeptidase activity1.81E-03
61GO:0000254: C-4 methylsterol oxidase activity2.11E-03
62GO:0048027: mRNA 5'-UTR binding2.11E-03
63GO:0004792: thiosulfate sulfurtransferase activity2.11E-03
64GO:0004416: hydroxyacylglutathione hydrolase activity2.11E-03
65GO:0009882: blue light photoreceptor activity2.11E-03
66GO:0047627: adenylylsulfatase activity2.11E-03
67GO:0051861: glycolipid binding2.84E-03
68GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.84E-03
69GO:0043015: gamma-tubulin binding2.84E-03
70GO:0009011: starch synthase activity2.84E-03
71GO:0043495: protein anchor2.84E-03
72GO:0005319: lipid transporter activity2.84E-03
73GO:0022891: substrate-specific transmembrane transporter activity3.32E-03
74GO:0003727: single-stranded RNA binding3.61E-03
75GO:0051011: microtubule minus-end binding3.63E-03
76GO:0004623: phospholipase A2 activity3.63E-03
77GO:0016773: phosphotransferase activity, alcohol group as acceptor3.63E-03
78GO:0004812: aminoacyl-tRNA ligase activity3.91E-03
79GO:0000293: ferric-chelate reductase activity4.49E-03
80GO:0008080: N-acetyltransferase activity4.56E-03
81GO:0010181: FMN binding4.90E-03
82GO:0015631: tubulin binding5.42E-03
83GO:0016157: sucrose synthase activity5.42E-03
84GO:0000287: magnesium ion binding5.78E-03
85GO:0016621: cinnamoyl-CoA reductase activity6.41E-03
86GO:0008233: peptidase activity8.04E-03
87GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.55E-03
88GO:0016168: chlorophyll binding8.64E-03
89GO:0016887: ATPase activity8.81E-03
90GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen9.45E-03
91GO:0008889: glycerophosphodiester phosphodiesterase activity9.71E-03
92GO:0071949: FAD binding9.71E-03
93GO:0005381: iron ion transmembrane transporter activity1.09E-02
94GO:0045309: protein phosphorylated amino acid binding1.09E-02
95GO:0016844: strictosidine synthase activity1.09E-02
96GO:0050897: cobalt ion binding1.24E-02
97GO:0005089: Rho guanyl-nucleotide exchange factor activity1.35E-02
98GO:0019904: protein domain specific binding1.35E-02
99GO:0003924: GTPase activity1.49E-02
100GO:0005315: inorganic phosphate transmembrane transporter activity1.63E-02
101GO:0031072: heat shock protein binding1.63E-02
102GO:0000155: phosphorelay sensor kinase activity1.63E-02
103GO:0042802: identical protein binding1.87E-02
104GO:0051537: 2 iron, 2 sulfur cluster binding1.90E-02
105GO:0051119: sugar transmembrane transporter activity1.92E-02
106GO:0003954: NADH dehydrogenase activity2.24E-02
107GO:0001046: core promoter sequence-specific DNA binding2.24E-02
108GO:0003714: transcription corepressor activity2.24E-02
109GO:0051536: iron-sulfur cluster binding2.24E-02
110GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.37E-02
111GO:0005515: protein binding2.41E-02
112GO:0003777: microtubule motor activity2.62E-02
113GO:0047134: protein-disulfide reductase activity3.28E-02
114GO:0004791: thioredoxin-disulfide reductase activity3.85E-02
115GO:0050662: coenzyme binding3.85E-02
116GO:0004872: receptor activity4.04E-02
117GO:0019843: rRNA binding4.21E-02
118GO:0004518: nuclease activity4.44E-02
119GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.65E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast9.89E-37
2GO:0009535: chloroplast thylakoid membrane5.38E-15
3GO:0031969: chloroplast membrane1.37E-07
4GO:0042651: thylakoid membrane3.98E-07
5GO:0009941: chloroplast envelope5.57E-07
6GO:0009570: chloroplast stroma5.74E-06
7GO:0030286: dynein complex1.02E-04
8GO:0009534: chloroplast thylakoid1.12E-04
9GO:0055035: plastid thylakoid membrane1.58E-04
10GO:0009536: plastid2.79E-04
11GO:0031972: chloroplast intermembrane space4.15E-04
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.15E-04
13GO:0008274: gamma-tubulin ring complex8.99E-04
14GO:0031304: intrinsic component of mitochondrial inner membrane8.99E-04
15GO:0080085: signal recognition particle, chloroplast targeting8.99E-04
16GO:0009528: plastid inner membrane1.46E-03
17GO:0010007: magnesium chelatase complex1.46E-03
18GO:0005875: microtubule associated complex2.06E-03
19GO:0000923: equatorial microtubule organizing center2.11E-03
20GO:0031977: thylakoid lumen2.69E-03
21GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.84E-03
22GO:0009526: plastid envelope2.84E-03
23GO:0009523: photosystem II5.26E-03
24GO:0031359: integral component of chloroplast outer membrane6.41E-03
25GO:0009706: chloroplast inner membrane6.85E-03
26GO:0009295: nucleoid7.26E-03
27GO:0009501: amyloplast7.45E-03
28GO:0010287: plastoglobule8.53E-03
29GO:0009539: photosystem II reaction center8.55E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.55E-03
31GO:0046930: pore complex8.55E-03
32GO:0009543: chloroplast thylakoid lumen9.14E-03
33GO:0005623: cell9.45E-03
34GO:0000922: spindle pole9.71E-03
35GO:0042644: chloroplast nucleoid9.71E-03
36GO:0009707: chloroplast outer membrane1.07E-02
37GO:0016324: apical plasma membrane1.22E-02
38GO:0009508: plastid chromosome1.63E-02
39GO:0043234: protein complex2.08E-02
40GO:0031966: mitochondrial membrane2.21E-02
41GO:0009654: photosystem II oxygen evolving complex2.40E-02
42GO:0045271: respiratory chain complex I2.40E-02
43GO:0005739: mitochondrion2.62E-02
44GO:0005747: mitochondrial respiratory chain complex I2.89E-02
45GO:0005773: vacuole3.40E-02
46GO:0009579: thylakoid4.50E-02
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Gene type



Gene DE type