co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
2	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
3	GO:0072321: chaperone-mediated protein transport	0.00E+00
4	GO:0044843: cell cycle G1/S phase transition	0.00E+00
5	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
6	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
7	GO:0034050: host programmed cell death induced by symbiont	0.00E+00
8	GO:1904874: positive regulation of telomerase RNA localization to Cajal body	0.00E+00
9	GO:0071731: response to nitric oxide	0.00E+00
10	GO:0006412: translation	2.09E-133
11	GO:0042254: ribosome biogenesis	2.29E-52
12	GO:0000027: ribosomal large subunit assembly	2.00E-14
13	GO:0006626: protein targeting to mitochondrion	1.86E-13
14	GO:0048569: post-embryonic animal organ development	8.98E-06
15	GO:0009967: positive regulation of signal transduction	8.98E-06
16	GO:0009955: adaxial/abaxial pattern specification	9.21E-06
17	GO:0006364: rRNA processing	1.54E-05
18	GO:0000028: ribosomal small subunit assembly	2.17E-05
19	GO:0002181: cytoplasmic translation	3.09E-05
20	GO:0045039: protein import into mitochondrial inner membrane	3.09E-05
21	GO:0010162: seed dormancy process	7.12E-05
22	GO:0042274: ribosomal small subunit biogenesis	1.17E-04
23	GO:0006413: translational initiation	1.33E-04
24	GO:0045040: protein import into mitochondrial outer membrane	2.55E-04
25	GO:0030150: protein import into mitochondrial matrix	2.57E-04
26	GO:0009735: response to cytokinin	3.00E-04
27	GO:0007005: mitochondrion organization	3.78E-04
28	GO:0019877: diaminopimelate biosynthetic process	4.51E-04
29	GO:1990258: histone glutamine methylation	4.51E-04
30	GO:1901430: positive regulation of syringal lignin biosynthetic process	4.51E-04
31	GO:0006407: rRNA export from nucleus	4.51E-04
32	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	4.51E-04
33	GO:0031120: snRNA pseudouridine synthesis	4.51E-04
34	GO:0000469: cleavage involved in rRNA processing	4.51E-04
35	GO:0031118: rRNA pseudouridine synthesis	4.51E-04
36	GO:0035266: meristem growth	4.51E-04
37	GO:0030490: maturation of SSU-rRNA	4.51E-04
38	GO:0006434: seryl-tRNA aminoacylation	4.51E-04
39	GO:0000494: box C/D snoRNA 3'-end processing	4.51E-04
40	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.51E-04
41	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.51E-04
42	GO:0010197: polar nucleus fusion	6.40E-04
43	GO:0015786: UDP-glucose transport	9.73E-04
44	GO:0045859: regulation of protein kinase activity	9.73E-04
45	GO:0045905: positive regulation of translational termination	9.73E-04
46	GO:0009156: ribonucleoside monophosphate biosynthetic process	9.73E-04
47	GO:2000072: regulation of defense response to fungus, incompatible interaction	9.73E-04
48	GO:0045901: positive regulation of translational elongation	9.73E-04
49	GO:0006452: translational frameshifting	9.73E-04
50	GO:0006913: nucleocytoplasmic transport	1.27E-03
51	GO:1902626: assembly of large subunit precursor of preribosome	1.58E-03
52	GO:0009150: purine ribonucleotide metabolic process	1.58E-03
53	GO:0015783: GDP-fucose transport	1.58E-03
54	GO:0010476: gibberellin mediated signaling pathway	1.58E-03
55	GO:0042256: mature ribosome assembly	1.58E-03
56	GO:0006165: nucleoside diphosphate phosphorylation	2.29E-03
57	GO:0006228: UTP biosynthetic process	2.29E-03
58	GO:0006164: purine nucleotide biosynthetic process	2.29E-03
59	GO:0009855: determination of bilateral symmetry	2.29E-03
60	GO:0046513: ceramide biosynthetic process	2.29E-03
61	GO:0007004: telomere maintenance via telomerase	2.29E-03
62	GO:0070301: cellular response to hydrogen peroxide	2.29E-03
63	GO:0006241: CTP biosynthetic process	2.29E-03
64	GO:0072334: UDP-galactose transmembrane transport	2.29E-03
65	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	2.29E-03
66	GO:0009944: polarity specification of adaxial/abaxial axis	2.58E-03
67	GO:0051205: protein insertion into membrane	3.08E-03
68	GO:0009165: nucleotide biosynthetic process	3.08E-03
69	GO:0051781: positive regulation of cell division	3.08E-03
70	GO:0006183: GTP biosynthetic process	3.08E-03
71	GO:0042273: ribosomal large subunit biogenesis	3.08E-03
72	GO:0015031: protein transport	3.71E-03
73	GO:0009294: DNA mediated transformation	3.75E-03
74	GO:0040007: growth	3.75E-03
75	GO:0071215: cellular response to abscisic acid stimulus	3.75E-03
76	GO:0097428: protein maturation by iron-sulfur cluster transfer	3.95E-03
77	GO:0006461: protein complex assembly	3.95E-03
78	GO:1902183: regulation of shoot apical meristem development	3.95E-03
79	GO:0031167: rRNA methylation	3.95E-03
80	GO:0008033: tRNA processing	4.78E-03
81	GO:0006606: protein import into nucleus	4.78E-03
82	GO:0000741: karyogamy	4.89E-03
83	GO:0016070: RNA metabolic process	4.89E-03
84	GO:0000470: maturation of LSU-rRNA	4.89E-03
85	GO:0000054: ribosomal subunit export from nucleus	5.90E-03
86	GO:0006458: 'de novo' protein folding	5.90E-03
87	GO:0000245: spliceosomal complex assembly	5.90E-03
88	GO:0080186: developmental vegetative growth	6.98E-03
89	GO:0001522: pseudouridine synthesis	8.12E-03
90	GO:0006605: protein targeting	8.12E-03
91	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	8.12E-03
92	GO:0001558: regulation of cell growth	9.33E-03
93	GO:0010204: defense response signaling pathway, resistance gene-independent	9.33E-03
94	GO:0043562: cellular response to nitrogen levels	9.33E-03
95	GO:0022900: electron transport chain	9.33E-03
96	GO:0001510: RNA methylation	9.33E-03
97	GO:0006414: translational elongation	9.45E-03
98	GO:0000398: mRNA splicing, via spliceosome	9.63E-03
99	GO:0048507: meristem development	1.06E-02
100	GO:0006189: 'de novo' IMP biosynthetic process	1.06E-02
101	GO:0015780: nucleotide-sugar transport	1.06E-02
102	GO:0007338: single fertilization	1.06E-02
103	GO:0042761: very long-chain fatty acid biosynthetic process	1.19E-02
104	GO:0010449: root meristem growth	1.19E-02
105	GO:0016573: histone acetylation	1.19E-02
106	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.33E-02
107	GO:0030422: production of siRNA involved in RNA interference	1.33E-02
108	GO:0009089: lysine biosynthetic process via diaminopimelate	1.47E-02
109	GO:0006879: cellular iron ion homeostasis	1.47E-02
110	GO:0010015: root morphogenesis	1.47E-02
111	GO:0009682: induced systemic resistance	1.47E-02
112	GO:0009793: embryo development ending in seed dormancy	1.50E-02
113	GO:0046686: response to cadmium ion	1.57E-02
114	GO:0006790: sulfur compound metabolic process	1.62E-02
115	GO:0012501: programmed cell death	1.62E-02
116	GO:0006820: anion transport	1.62E-02
117	GO:0010102: lateral root morphogenesis	1.78E-02
118	GO:2000012: regulation of auxin polar transport	1.78E-02
119	GO:0006446: regulation of translational initiation	1.94E-02
120	GO:0008283: cell proliferation	1.99E-02
121	GO:0009644: response to high light intensity	2.15E-02
122	GO:0009965: leaf morphogenesis	2.23E-02
123	GO:0009116: nucleoside metabolic process	2.44E-02
124	GO:0010073: meristem maintenance	2.62E-02
125	GO:0051302: regulation of cell division	2.62E-02
126	GO:0015992: proton transport	2.81E-02
127	GO:0061077: chaperone-mediated protein folding	2.81E-02
128	GO:0016226: iron-sulfur cluster assembly	2.99E-02
129	GO:0009409: response to cold	3.01E-02
130	GO:0010089: xylem development	3.38E-02
131	GO:0010584: pollen exine formation	3.38E-02
132	GO:0016569: covalent chromatin modification	3.59E-02
133	GO:0009553: embryo sac development	3.70E-02
134	GO:0000413: protein peptidyl-prolyl isomerization	3.78E-02
135	GO:0010305: leaf vascular tissue pattern formation	3.99E-02
136	GO:0009960: endosperm development	3.99E-02
137	GO:0009749: response to glucose	4.41E-02
138	GO:0010183: pollen tube guidance	4.41E-02
139	GO:0032502: developmental process	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0034513: box H/ACA snoRNA binding	0.00E+00
2	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
3	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
4	GO:0003735: structural constituent of ribosome	4.40E-161
5	GO:0003729: mRNA binding	2.38E-25
6	GO:0019843: rRNA binding	2.43E-16
7	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.11E-09
8	GO:0003746: translation elongation factor activity	3.03E-06
9	GO:0003723: RNA binding	3.14E-06
10	GO:0005078: MAP-kinase scaffold activity	8.98E-06
11	GO:0030515: snoRNA binding	1.46E-05
12	GO:0001055: RNA polymerase II activity	5.54E-05
13	GO:0008097: 5S rRNA binding	6.67E-05
14	GO:0001054: RNA polymerase I activity	8.96E-05
15	GO:0001056: RNA polymerase III activity	1.11E-04
16	GO:0003743: translation initiation factor activity	2.24E-04
17	GO:0004407: histone deacetylase activity	2.57E-04
18	GO:0047326: inositol tetrakisphosphate 5-kinase activity	4.51E-04
19	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	4.51E-04
20	GO:0048037: cofactor binding	4.51E-04
21	GO:0005080: protein kinase C binding	4.51E-04
22	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	4.51E-04
23	GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H	4.51E-04
24	GO:1990259: histone-glutamine methyltransferase activity	4.51E-04
25	GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase	4.51E-04
26	GO:0000824: inositol tetrakisphosphate 3-kinase activity	4.51E-04
27	GO:0004828: serine-tRNA ligase activity	4.51E-04
28	GO:0004679: AMP-activated protein kinase activity	4.51E-04
29	GO:0043022: ribosome binding	5.51E-04
30	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	9.73E-04
31	GO:0004776: succinate-CoA ligase (GDP-forming) activity	9.73E-04
32	GO:0036455: iron-sulfur transferase activity	9.73E-04
33	GO:0050291: sphingosine N-acyltransferase activity	9.73E-04
34	GO:0070034: telomerase RNA binding	9.73E-04
35	GO:0004750: ribulose-phosphate 3-epimerase activity	9.73E-04
36	GO:0004775: succinate-CoA ligase (ADP-forming) activity	9.73E-04
37	GO:0044183: protein binding involved in protein folding	1.27E-03
38	GO:0000166: nucleotide binding	1.30E-03
39	GO:0008649: rRNA methyltransferase activity	1.58E-03
40	GO:0005457: GDP-fucose transmembrane transporter activity	1.58E-03
41	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.58E-03
42	GO:0032947: protein complex scaffold	1.58E-03
43	GO:0015266: protein channel activity	1.65E-03
44	GO:0005460: UDP-glucose transmembrane transporter activity	2.29E-03
45	GO:0004550: nucleoside diphosphate kinase activity	2.29E-03
46	GO:0047627: adenylylsulfatase activity	2.29E-03
47	GO:0004749: ribose phosphate diphosphokinase activity	2.29E-03
48	GO:0008198: ferrous iron binding	3.95E-03
49	GO:0004040: amidase activity	3.95E-03
50	GO:0005459: UDP-galactose transmembrane transporter activity	3.95E-03
51	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	5.11E-03
52	GO:0019887: protein kinase regulator activity	5.90E-03
53	GO:0004656: procollagen-proline 4-dioxygenase activity	5.90E-03
54	GO:0005338: nucleotide-sugar transmembrane transporter activity	6.98E-03
55	GO:0008235: metalloexopeptidase activity	6.98E-03
56	GO:0015288: porin activity	8.12E-03
57	GO:0008135: translation factor activity, RNA binding	9.33E-03
58	GO:0008308: voltage-gated anion channel activity	9.33E-03
59	GO:0000049: tRNA binding	1.62E-02
60	GO:0051539: 4 iron, 4 sulfur cluster binding	1.75E-02
61	GO:0031418: L-ascorbic acid binding	2.44E-02
62	GO:0051087: chaperone binding	2.62E-02
63	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	2.81E-02
64	GO:0008514: organic anion transmembrane transporter activity	3.38E-02
65	GO:0051082: unfolded protein binding	3.81E-02
66	GO:0008536: Ran GTPase binding	3.99E-02
67	GO:0008026: ATP-dependent helicase activity	4.04E-02
68	GO:0010181: FMN binding	4.20E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0072589: box H/ACA scaRNP complex	0.00E+00
3	GO:0005832: chaperonin-containing T-complex	0.00E+00
4	GO:0090661: box H/ACA telomerase RNP complex	0.00E+00
5	GO:0022625: cytosolic large ribosomal subunit	1.00E-115
6	GO:0005840: ribosome	8.91E-108
7	GO:0022626: cytosolic ribosome	1.96E-93
8	GO:0022627: cytosolic small ribosomal subunit	7.31E-62
9	GO:0005730: nucleolus	1.30E-43
10	GO:0005737: cytoplasm	9.57E-33
11	GO:0005829: cytosol	3.31E-31
12	GO:0009506: plasmodesma	3.51E-25
13	GO:0015934: large ribosomal subunit	7.16E-19
14	GO:0005774: vacuolar membrane	4.77E-15
15	GO:0015935: small ribosomal subunit	4.71E-12
16	GO:0005773: vacuole	3.09E-11
17	GO:0016020: membrane	5.57E-10
18	GO:0005618: cell wall	2.47E-09
19	GO:0005742: mitochondrial outer membrane translocase complex	5.57E-07
20	GO:0005758: mitochondrial intermembrane space	1.42E-05
21	GO:0005853: eukaryotic translation elongation factor 1 complex	3.09E-05
22	GO:0005886: plasma membrane	3.84E-05
23	GO:0005736: DNA-directed RNA polymerase I complex	4.19E-05
24	GO:0005666: DNA-directed RNA polymerase III complex	5.54E-05
25	GO:0015030: Cajal body	5.54E-05
26	GO:0005743: mitochondrial inner membrane	6.07E-05
27	GO:0000418: DNA-directed RNA polymerase IV complex	7.12E-05
28	GO:0005665: DNA-directed RNA polymerase II, core complex	1.11E-04
29	GO:0031428: box C/D snoRNP complex	2.55E-04
30	GO:0009507: chloroplast	3.05E-04
31	GO:0005741: mitochondrial outer membrane	3.35E-04
32	GO:0030686: 90S preribosome	4.51E-04
33	GO:0035267: NuA4 histone acetyltransferase complex	9.73E-04
34	GO:0005852: eukaryotic translation initiation factor 3 complex	1.27E-03
35	GO:0032040: small-subunit processome	1.45E-03
36	GO:0005622: intracellular	1.53E-03
37	GO:0031429: box H/ACA snoRNP complex	2.29E-03
38	GO:0000419: DNA-directed RNA polymerase V complex	2.33E-03
39	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.08E-03
40	GO:0000974: Prp19 complex	4.89E-03
41	GO:0016272: prefoldin complex	5.90E-03
42	GO:0005747: mitochondrial respiratory chain complex I	6.59E-03
43	GO:0005834: heterotrimeric G-protein complex	6.86E-03
44	GO:0031359: integral component of chloroplast outer membrane	6.98E-03
45	GO:0005688: U6 snRNP	8.12E-03
46	GO:0030529: intracellular ribonucleoprotein complex	9.24E-03
47	GO:0046930: pore complex	9.33E-03
48	GO:0046540: U4/U6 x U5 tri-snRNP complex	9.33E-03
49	GO:0005763: mitochondrial small ribosomal subunit	1.06E-02
50	GO:0071011: precatalytic spliceosome	1.19E-02
51	GO:0005759: mitochondrial matrix	1.43E-02
52	GO:0071013: catalytic step 2 spliceosome	1.47E-02
53	GO:0048471: perinuclear region of cytoplasm	1.47E-02
54	GO:0031307: integral component of mitochondrial outer membrane	1.62E-02
55	GO:0019013: viral nucleocapsid	1.78E-02
56	GO:0005635: nuclear envelope	2.87E-02
57	GO:0005681: spliceosomal complex	3.17E-02
58	GO:0005732: small nucleolar ribonucleoprotein complex	4.15E-02
59	GO:0005783: endoplasmic reticulum	4.32E-02
60	GO:0016592: mediator complex	4.85E-02
61	GO:0005623: cell	4.88E-02