co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:0010412: mannan metabolic process	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0006461: protein complex assembly	5.28E-05
6	GO:0009913: epidermal cell differentiation	7.77E-05
7	GO:0008610: lipid biosynthetic process	1.82E-04
8	GO:0097298: regulation of nucleus size	2.13E-04
9	GO:0031338: regulation of vesicle fusion	2.13E-04
10	GO:0060627: regulation of vesicle-mediated transport	2.13E-04
11	GO:0009409: response to cold	2.88E-04
12	GO:0015786: UDP-glucose transport	4.76E-04
13	GO:0010270: photosystem II oxygen evolving complex assembly	4.76E-04
14	GO:0009631: cold acclimation	5.67E-04
15	GO:0044210: 'de novo' CTP biosynthetic process	7.74E-04
16	GO:0010623: programmed cell death involved in cell development	7.74E-04
17	GO:0090630: activation of GTPase activity	7.74E-04
18	GO:0015783: GDP-fucose transport	7.74E-04
19	GO:0010025: wax biosynthetic process	8.05E-04
20	GO:0009833: plant-type primary cell wall biogenesis	8.05E-04
21	GO:0030100: regulation of endocytosis	1.10E-03
22	GO:0006424: glutamyl-tRNA aminoacylation	1.10E-03
23	GO:1901000: regulation of response to salt stress	1.10E-03
24	GO:0072334: UDP-galactose transmembrane transport	1.10E-03
25	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.10E-03
26	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.27E-03
27	GO:0010508: positive regulation of autophagy	1.47E-03
28	GO:0071585: detoxification of cadmium ion	1.47E-03
29	GO:2000122: negative regulation of stomatal complex development	1.47E-03
30	GO:0010037: response to carbon dioxide	1.47E-03
31	GO:0015976: carbon utilization	1.47E-03
32	GO:0046345: abscisic acid catabolic process	1.47E-03
33	GO:0015689: molybdate ion transport	1.47E-03
34	GO:0019464: glycine decarboxylation via glycine cleavage system	1.47E-03
35	GO:0045727: positive regulation of translation	1.47E-03
36	GO:0046355: mannan catabolic process	1.47E-03
37	GO:0022622: root system development	1.47E-03
38	GO:0070417: cellular response to cold	1.49E-03
39	GO:0042335: cuticle development	1.61E-03
40	GO:0042631: cellular response to water deprivation	1.61E-03
41	GO:0009823: cytokinin catabolic process	1.87E-03
42	GO:0006544: glycine metabolic process	1.87E-03
43	GO:0006656: phosphatidylcholine biosynthetic process	1.87E-03
44	GO:0032543: mitochondrial translation	1.87E-03
45	GO:0071555: cell wall organization	1.94E-03
46	GO:0000302: response to reactive oxygen species	2.13E-03
47	GO:0015979: photosynthesis	2.26E-03
48	GO:0006828: manganese ion transport	2.31E-03
49	GO:0047484: regulation of response to osmotic stress	2.31E-03
50	GO:0006563: L-serine metabolic process	2.31E-03
51	GO:0000470: maturation of LSU-rRNA	2.31E-03
52	GO:0009828: plant-type cell wall loosening	2.58E-03
53	GO:0045926: negative regulation of growth	2.77E-03
54	GO:0071470: cellular response to osmotic stress	2.77E-03
55	GO:0050829: defense response to Gram-negative bacterium	3.26E-03
56	GO:0010103: stomatal complex morphogenesis	3.26E-03
57	GO:0032880: regulation of protein localization	3.26E-03
58	GO:0009819: drought recovery	3.78E-03
59	GO:0009690: cytokinin metabolic process	3.78E-03
60	GO:0009704: de-etiolation	3.78E-03
61	GO:0005978: glycogen biosynthetic process	3.78E-03
62	GO:0035265: organ growth	3.78E-03
63	GO:0045490: pectin catabolic process	3.95E-03
64	GO:0009817: defense response to fungus, incompatible interaction	4.00E-03
65	GO:0009657: plastid organization	4.33E-03
66	GO:0006997: nucleus organization	4.33E-03
67	GO:0032544: plastid translation	4.33E-03
68	GO:0009827: plant-type cell wall modification	4.33E-03
69	GO:0010206: photosystem II repair	4.90E-03
70	GO:0016051: carbohydrate biosynthetic process	5.07E-03
71	GO:0042761: very long-chain fatty acid biosynthetic process	5.50E-03
72	GO:0035999: tetrahydrofolate interconversion	5.50E-03
73	GO:0009641: shade avoidance	6.12E-03
74	GO:0006949: syncytium formation	6.12E-03
75	GO:0048765: root hair cell differentiation	6.77E-03
76	GO:0000038: very long-chain fatty acid metabolic process	6.77E-03
77	GO:0006816: calcium ion transport	6.77E-03
78	GO:0042546: cell wall biogenesis	6.79E-03
79	GO:0009735: response to cytokinin	6.98E-03
80	GO:0045037: protein import into chloroplast stroma	7.44E-03
81	GO:0015706: nitrate transport	7.44E-03
82	GO:0010102: lateral root morphogenesis	8.13E-03
83	GO:2000012: regulation of auxin polar transport	8.13E-03
84	GO:0009664: plant-type cell wall organization	8.20E-03
85	GO:0042538: hyperosmotic salinity response	8.20E-03
86	GO:0043086: negative regulation of catalytic activity	1.04E-02
87	GO:0000027: ribosomal large subunit assembly	1.11E-02
88	GO:0030150: protein import into mitochondrial matrix	1.11E-02
89	GO:0006289: nucleotide-excision repair	1.11E-02
90	GO:0016310: phosphorylation	1.13E-02
91	GO:0007017: microtubule-based process	1.19E-02
92	GO:0042545: cell wall modification	1.22E-02
93	GO:0009624: response to nematode	1.26E-02
94	GO:0016998: cell wall macromolecule catabolic process	1.27E-02
95	GO:0030245: cellulose catabolic process	1.36E-02
96	GO:0001944: vasculature development	1.45E-02
97	GO:0006012: galactose metabolic process	1.45E-02
98	GO:0006284: base-excision repair	1.53E-02
99	GO:0010089: xylem development	1.53E-02
100	GO:0008284: positive regulation of cell proliferation	1.62E-02
101	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.62E-02
102	GO:0008152: metabolic process	1.68E-02
103	GO:0000226: microtubule cytoskeleton organization	1.72E-02
104	GO:0045489: pectin biosynthetic process	1.81E-02
105	GO:0009958: positive gravitropism	1.81E-02
106	GO:0010268: brassinosteroid homeostasis	1.81E-02
107	GO:0048825: cotyledon development	2.00E-02
108	GO:0009749: response to glucose	2.00E-02
109	GO:0019252: starch biosynthetic process	2.00E-02
110	GO:0016132: brassinosteroid biosynthetic process	2.10E-02
111	GO:0007623: circadian rhythm	2.18E-02
112	GO:0010583: response to cyclopentenone	2.20E-02
113	GO:1901657: glycosyl compound metabolic process	2.31E-02
114	GO:0030163: protein catabolic process	2.31E-02
115	GO:0006979: response to oxidative stress	2.33E-02
116	GO:0009639: response to red or far red light	2.41E-02
117	GO:0006310: DNA recombination	2.41E-02
118	GO:0016125: sterol metabolic process	2.41E-02
119	GO:0019760: glucosinolate metabolic process	2.41E-02
120	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.44E-02
121	GO:0009739: response to gibberellin	2.44E-02
122	GO:0006470: protein dephosphorylation	2.49E-02
123	GO:0009737: response to abscisic acid	2.51E-02
124	GO:0010468: regulation of gene expression	2.60E-02
125	GO:0030154: cell differentiation	2.62E-02
126	GO:0009911: positive regulation of flower development	2.73E-02
127	GO:0042128: nitrate assimilation	2.95E-02
128	GO:0009416: response to light stimulus	3.05E-02
129	GO:0015995: chlorophyll biosynthetic process	3.07E-02
130	GO:0010411: xyloglucan metabolic process	3.07E-02
131	GO:0009826: unidimensional cell growth	3.24E-02
132	GO:0015031: protein transport	3.28E-02
133	GO:0030244: cellulose biosynthetic process	3.30E-02
134	GO:0009832: plant-type cell wall biogenesis	3.42E-02
135	GO:0042254: ribosome biogenesis	3.43E-02
136	GO:0048527: lateral root development	3.66E-02
137	GO:0010119: regulation of stomatal movement	3.66E-02
138	GO:0007568: aging	3.66E-02
139	GO:0009637: response to blue light	3.91E-02
140	GO:0009853: photorespiration	3.91E-02
141	GO:0034599: cellular response to oxidative stress	4.03E-02
142	GO:0080167: response to karrikin	4.17E-02
143	GO:0005975: carbohydrate metabolic process	4.24E-02
144	GO:0006631: fatty acid metabolic process	4.41E-02
145	GO:0006508: proteolysis	4.58E-02
146	GO:0008283: cell proliferation	4.68E-02
147	GO:0009640: photomorphogenesis	4.68E-02
148	GO:0010114: response to red light	4.68E-02
149	GO:0009744: response to sucrose	4.68E-02
150	GO:0009644: response to high light intensity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0003883: CTP synthase activity	1.79E-05
5	GO:0008266: poly(U) RNA binding	3.08E-05
6	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	2.13E-04
7	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.13E-04
8	GO:0004105: choline-phosphate cytidylyltransferase activity	2.13E-04
9	GO:0019843: rRNA binding	4.21E-04
10	GO:0048531: beta-1,3-galactosyltransferase activity	4.76E-04
11	GO:0047216: inositol 3-alpha-galactosyltransferase activity	4.76E-04
12	GO:0046910: pectinesterase inhibitor activity	6.22E-04
13	GO:0008083: growth factor activity	6.47E-04
14	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	7.74E-04
15	GO:0017108: 5'-flap endonuclease activity	7.74E-04
16	GO:0005457: GDP-fucose transmembrane transporter activity	7.74E-04
17	GO:0004324: ferredoxin-NADP+ reductase activity	7.74E-04
18	GO:0016851: magnesium chelatase activity	1.10E-03
19	GO:0005460: UDP-glucose transmembrane transporter activity	1.10E-03
20	GO:0015098: molybdate ion transmembrane transporter activity	1.47E-03
21	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.47E-03
22	GO:0016985: mannan endo-1,4-beta-mannosidase activity	1.47E-03
23	GO:0019104: DNA N-glycosylase activity	1.47E-03
24	GO:0017137: Rab GTPase binding	1.87E-03
25	GO:0004372: glycine hydroxymethyltransferase activity	1.87E-03
26	GO:0003959: NADPH dehydrogenase activity	1.87E-03
27	GO:0005459: UDP-galactose transmembrane transporter activity	1.87E-03
28	GO:0019139: cytokinin dehydrogenase activity	1.87E-03
29	GO:0004130: cytochrome-c peroxidase activity	2.31E-03
30	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.23E-03
31	GO:0004620: phospholipase activity	3.26E-03
32	GO:0003924: GTPase activity	3.34E-03
33	GO:0015288: porin activity	3.78E-03
34	GO:0016209: antioxidant activity	3.78E-03
35	GO:0004034: aldose 1-epimerase activity	3.78E-03
36	GO:0004222: metalloendopeptidase activity	4.41E-03
37	GO:0005384: manganese ion transmembrane transporter activity	5.50E-03
38	GO:0015112: nitrate transmembrane transporter activity	5.50E-03
39	GO:0015020: glucuronosyltransferase activity	6.12E-03
40	GO:0015386: potassium:proton antiporter activity	6.77E-03
41	GO:0043565: sequence-specific DNA binding	7.07E-03
42	GO:0015266: protein channel activity	8.13E-03
43	GO:0004022: alcohol dehydrogenase (NAD) activity	8.13E-03
44	GO:0004089: carbonate dehydratase activity	8.13E-03
45	GO:0015095: magnesium ion transmembrane transporter activity	8.13E-03
46	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.84E-03
47	GO:0045330: aspartyl esterase activity	9.75E-03
48	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.03E-02
49	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.03E-02
50	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.03E-02
51	GO:0005528: FK506 binding	1.11E-02
52	GO:0030599: pectinesterase activity	1.18E-02
53	GO:0015079: potassium ion transmembrane transporter activity	1.19E-02
54	GO:0004707: MAP kinase activity	1.27E-02
55	GO:0030570: pectate lyase activity	1.45E-02
56	GO:0008810: cellulase activity	1.45E-02
57	GO:0016760: cellulose synthase (UDP-forming) activity	1.45E-02
58	GO:0005525: GTP binding	1.69E-02
59	GO:0004252: serine-type endopeptidase activity	1.75E-02
60	GO:0050662: coenzyme binding	1.91E-02
61	GO:0016853: isomerase activity	1.91E-02
62	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.10E-02
63	GO:0004518: nuclease activity	2.20E-02
64	GO:0016759: cellulose synthase activity	2.41E-02
65	GO:0003684: damaged DNA binding	2.41E-02
66	GO:0008237: metallopeptidase activity	2.52E-02
67	GO:0005200: structural constituent of cytoskeleton	2.52E-02
68	GO:0008375: acetylglucosaminyltransferase activity	2.95E-02
69	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.07E-02
70	GO:0102483: scopolin beta-glucosidase activity	3.07E-02
71	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.18E-02
72	GO:0008236: serine-type peptidase activity	3.18E-02
73	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.30E-02
74	GO:0005096: GTPase activator activity	3.42E-02
75	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.66E-02
76	GO:0003993: acid phosphatase activity	4.03E-02
77	GO:0008422: beta-glucosidase activity	4.16E-02
78	GO:0061630: ubiquitin protein ligase activity	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0033557: Slx1-Slx4 complex	0.00E+00
2	GO:0034426: etioplast membrane	0.00E+00
3	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
4	GO:0009941: chloroplast envelope	1.22E-08
5	GO:0009570: chloroplast stroma	1.28E-07
6	GO:0009534: chloroplast thylakoid	3.03E-07
7	GO:0009535: chloroplast thylakoid membrane	3.40E-07
8	GO:0031357: integral component of chloroplast inner membrane	2.14E-06
9	GO:0009533: chloroplast stromal thylakoid	1.42E-04
10	GO:0009579: thylakoid	1.51E-04
11	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.13E-04
12	GO:0009507: chloroplast	5.98E-04
13	GO:0005652: nuclear lamina	7.74E-04
14	GO:0010007: magnesium chelatase complex	7.74E-04
15	GO:0031977: thylakoid lumen	7.90E-04
16	GO:0005886: plasma membrane	9.47E-04
17	GO:0009527: plastid outer membrane	1.47E-03
18	GO:0016020: membrane	1.52E-03
19	GO:0005798: Golgi-associated vesicle	2.31E-03
20	GO:0010287: plastoglobule	2.45E-03
21	GO:0009543: chloroplast thylakoid lumen	2.62E-03
22	GO:0010319: stromule	2.74E-03
23	GO:0048046: apoplast	3.17E-03
24	GO:0034399: nuclear periphery	3.78E-03
25	GO:0031305: integral component of mitochondrial inner membrane	3.78E-03
26	GO:0005618: cell wall	3.89E-03
27	GO:0046930: pore complex	4.33E-03
28	GO:0042644: chloroplast nucleoid	4.90E-03
29	GO:0045298: tubulin complex	4.90E-03
30	GO:0009508: plastid chromosome	8.13E-03
31	GO:0031012: extracellular matrix	8.13E-03
32	GO:0030095: chloroplast photosystem II	8.84E-03
33	GO:0031969: chloroplast membrane	9.04E-03
34	GO:0005769: early endosome	1.03E-02
35	GO:0005654: nucleoplasm	1.53E-02
36	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.53E-02
37	GO:0005622: intracellular	1.90E-02
38	GO:0031965: nuclear membrane	2.00E-02
39	GO:0009523: photosystem II	2.00E-02
40	GO:0071944: cell periphery	2.31E-02
41	GO:0005615: extracellular space	2.44E-02
42	GO:0005840: ribosome	2.47E-02
43	GO:0009295: nucleoid	2.52E-02
44	GO:0046658: anchored component of plasma membrane	2.88E-02
45	GO:0009505: plant-type cell wall	3.21E-02
46	GO:0009707: chloroplast outer membrane	3.30E-02
47	GO:0000139: Golgi membrane	3.60E-02
48	GO:0022625: cytosolic large ribosomal subunit	4.38E-02