co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080052: response to histidine	0.00E+00
2	GO:0080053: response to phenylalanine	0.00E+00
3	GO:0033587: shikimate biosynthetic process	0.00E+00
4	GO:0045730: respiratory burst	0.00E+00
5	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
6	GO:0043201: response to leucine	0.00E+00
7	GO:0009423: chorismate biosynthetic process	1.91E-05
8	GO:0030198: extracellular matrix organization	7.23E-05
9	GO:0006007: glucose catabolic process	7.23E-05
10	GO:0009968: negative regulation of signal transduction	7.23E-05
11	GO:0009820: alkaloid metabolic process	7.23E-05
12	GO:0043547: positive regulation of GTPase activity	7.23E-05
13	GO:0019567: arabinose biosynthetic process	7.23E-05
14	GO:0009073: aromatic amino acid family biosynthetic process	9.43E-05
15	GO:0015706: nitrate transport	1.10E-04
16	GO:0009611: response to wounding	1.34E-04
17	GO:0015865: purine nucleotide transport	1.74E-04
18	GO:0042939: tripeptide transport	1.74E-04
19	GO:0030187: melatonin biosynthetic process	1.74E-04
20	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	1.74E-04
21	GO:1990069: stomatal opening	1.74E-04
22	GO:0015802: basic amino acid transport	1.74E-04
23	GO:0051262: protein tetramerization	1.74E-04
24	GO:0019632: shikimate metabolic process	1.74E-04
25	GO:0009809: lignin biosynthetic process	1.89E-04
26	GO:0055085: transmembrane transport	2.07E-04
27	GO:0006556: S-adenosylmethionine biosynthetic process	2.93E-04
28	GO:0006065: UDP-glucuronate biosynthetic process	2.93E-04
29	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	2.93E-04
30	GO:0052546: cell wall pectin metabolic process	2.93E-04
31	GO:0045017: glycerolipid biosynthetic process	4.23E-04
32	GO:0010116: positive regulation of abscisic acid biosynthetic process	4.23E-04
33	GO:0046902: regulation of mitochondrial membrane permeability	4.23E-04
34	GO:0033356: UDP-L-arabinose metabolic process	5.65E-04
35	GO:0030007: cellular potassium ion homeostasis	5.65E-04
36	GO:0042938: dipeptide transport	5.65E-04
37	GO:0080037: negative regulation of cytokinin-activated signaling pathway	5.65E-04
38	GO:0009164: nucleoside catabolic process	7.14E-04
39	GO:2000762: regulation of phenylpropanoid metabolic process	7.14E-04
40	GO:0006564: L-serine biosynthetic process	7.14E-04
41	GO:0042128: nitrate assimilation	8.15E-04
42	GO:0015977: carbon fixation	1.04E-03
43	GO:0071669: plant-type cell wall organization or biogenesis	1.21E-03
44	GO:1902074: response to salt	1.21E-03
45	GO:0098869: cellular oxidant detoxification	1.21E-03
46	GO:0043090: amino acid import	1.21E-03
47	GO:0006099: tricarboxylic acid cycle	1.23E-03
48	GO:0080167: response to karrikin	1.37E-03
49	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.40E-03
50	GO:0030162: regulation of proteolysis	1.40E-03
51	GO:0051707: response to other organism	1.51E-03
52	GO:0010497: plasmodesmata-mediated intercellular transport	1.59E-03
53	GO:0009808: lignin metabolic process	1.59E-03
54	GO:0006754: ATP biosynthetic process	1.80E-03
55	GO:0015780: nucleotide-sugar transport	1.80E-03
56	GO:0007338: single fertilization	1.80E-03
57	GO:0006098: pentose-phosphate shunt	1.80E-03
58	GO:0009664: plant-type cell wall organization	1.89E-03
59	GO:2000280: regulation of root development	2.01E-03
60	GO:0008202: steroid metabolic process	2.01E-03
61	GO:0006857: oligopeptide transport	2.16E-03
62	GO:0006032: chitin catabolic process	2.23E-03
63	GO:0051555: flavonol biosynthetic process	2.23E-03
64	GO:0000272: polysaccharide catabolic process	2.46E-03
65	GO:0008152: metabolic process	2.54E-03
66	GO:0010102: lateral root morphogenesis	2.94E-03
67	GO:0018107: peptidyl-threonine phosphorylation	2.94E-03
68	GO:0055046: microgametogenesis	2.94E-03
69	GO:0002237: response to molecule of bacterial origin	3.19E-03
70	GO:0009887: animal organ morphogenesis	3.19E-03
71	GO:0010167: response to nitrate	3.44E-03
72	GO:0080147: root hair cell development	3.98E-03
73	GO:0003333: amino acid transmembrane transport	4.54E-03
74	GO:0016998: cell wall macromolecule catabolic process	4.54E-03
75	GO:0048511: rhythmic process	4.54E-03
76	GO:0016036: cellular response to phosphate starvation	4.58E-03
77	GO:0046686: response to cadmium ion	4.72E-03
78	GO:0006730: one-carbon metabolic process	4.83E-03
79	GO:0009561: megagametogenesis	5.43E-03
80	GO:0042127: regulation of cell proliferation	5.43E-03
81	GO:0010118: stomatal movement	6.05E-03
82	GO:0015991: ATP hydrolysis coupled proton transport	6.05E-03
83	GO:0010182: sugar mediated signaling pathway	6.38E-03
84	GO:0046323: glucose import	6.38E-03
85	GO:0009741: response to brassinosteroid	6.38E-03
86	GO:0006814: sodium ion transport	6.70E-03
87	GO:0009749: response to glucose	7.04E-03
88	GO:0009737: response to abscisic acid	7.59E-03
89	GO:0009567: double fertilization forming a zygote and endosperm	8.43E-03
90	GO:0051607: defense response to virus	9.16E-03
91	GO:0042742: defense response to bacterium	1.13E-02
92	GO:0030244: cellulose biosynthetic process	1.15E-02
93	GO:0010311: lateral root formation	1.19E-02
94	GO:0009832: plant-type cell wall biogenesis	1.19E-02
95	GO:0009813: flavonoid biosynthetic process	1.19E-02
96	GO:0006865: amino acid transport	1.32E-02
97	GO:0009751: response to salicylic acid	1.37E-02
98	GO:0009753: response to jasmonic acid	1.50E-02
99	GO:0008283: cell proliferation	1.63E-02
100	GO:0009409: response to cold	1.67E-02
101	GO:0008643: carbohydrate transport	1.72E-02
102	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.86E-02
103	GO:0006812: cation transport	1.91E-02
104	GO:0042538: hyperosmotic salinity response	1.91E-02
105	GO:0005975: carbohydrate metabolic process	1.93E-02
106	GO:0006813: potassium ion transport	2.01E-02
107	GO:0006096: glycolytic process	2.26E-02
108	GO:0009626: plant-type hypersensitive response	2.37E-02
109	GO:0009620: response to fungus	2.42E-02
110	GO:0009555: pollen development	2.48E-02
111	GO:0042545: cell wall modification	2.53E-02
112	GO:0018105: peptidyl-serine phosphorylation	2.64E-02
113	GO:0009058: biosynthetic process	3.15E-02
114	GO:0042744: hydrogen peroxide catabolic process	3.32E-02
115	GO:0010150: leaf senescence	3.81E-02
116	GO:0045490: pectin catabolic process	3.81E-02
117	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.13E-02

Rank	GO Term	Adjusted P value
1	GO:0004107: chorismate synthase activity	0.00E+00
2	GO:0015575: mannitol transmembrane transporter activity	0.00E+00
3	GO:0030755: quercetin 3-O-methyltransferase activity	0.00E+00
4	GO:0030744: luteolin O-methyltransferase activity	0.00E+00
5	GO:0015591: D-ribose transmembrane transporter activity	0.00E+00
6	GO:0008281: sulfonylurea receptor activity	0.00E+00
7	GO:0015148: D-xylose transmembrane transporter activity	0.00E+00
8	GO:0003855: 3-dehydroquinate dehydratase activity	0.00E+00
9	GO:0005365: myo-inositol transmembrane transporter activity	0.00E+00
10	GO:0015576: sorbitol transmembrane transporter activity	0.00E+00
11	GO:0033799: myricetin 3'-O-methyltransferase activity	0.00E+00
12	GO:0005201: extracellular matrix structural constituent	0.00E+00
13	GO:0004764: shikimate 3-dehydrogenase (NADP+) activity	0.00E+00
14	GO:0047763: caffeate O-methyltransferase activity	0.00E+00
15	GO:0015112: nitrate transmembrane transporter activity	6.65E-05
16	GO:0015168: glycerol transmembrane transporter activity	7.23E-05
17	GO:0017096: acetylserotonin O-methyltransferase activity	7.23E-05
18	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	7.23E-05
19	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	7.23E-05
20	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	7.23E-05
21	GO:0032934: sterol binding	1.74E-04
22	GO:0052691: UDP-arabinopyranose mutase activity	1.74E-04
23	GO:0042937: tripeptide transporter activity	1.74E-04
24	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	1.74E-04
25	GO:0008964: phosphoenolpyruvate carboxylase activity	2.93E-04
26	GO:0003979: UDP-glucose 6-dehydrogenase activity	2.93E-04
27	GO:0004478: methionine adenosyltransferase activity	2.93E-04
28	GO:0005432: calcium:sodium antiporter activity	4.23E-04
29	GO:0005354: galactose transmembrane transporter activity	4.23E-04
30	GO:0016866: intramolecular transferase activity	5.65E-04
31	GO:0004930: G-protein coupled receptor activity	5.65E-04
32	GO:0042936: dipeptide transporter activity	5.65E-04
33	GO:0008194: UDP-glycosyltransferase activity	7.07E-04
34	GO:0005471: ATP:ADP antiporter activity	7.14E-04
35	GO:0015145: monosaccharide transmembrane transporter activity	7.14E-04
36	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.04E-03
37	GO:0004144: diacylglycerol O-acyltransferase activity	1.04E-03
38	GO:0004656: procollagen-proline 4-dioxygenase activity	1.04E-03
39	GO:0030145: manganese ion binding	1.08E-03
40	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.21E-03
41	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.21E-03
42	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.21E-03
43	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.40E-03
44	GO:0015491: cation:cation antiporter activity	1.40E-03
45	GO:0004564: beta-fructofuranosidase activity	1.40E-03
46	GO:0008142: oxysterol binding	1.59E-03
47	GO:0015293: symporter activity	1.69E-03
48	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.80E-03
49	GO:0016844: strictosidine synthase activity	2.01E-03
50	GO:0004575: sucrose alpha-glucosidase activity	2.01E-03
51	GO:0004568: chitinase activity	2.23E-03
52	GO:0015171: amino acid transmembrane transporter activity	2.24E-03
53	GO:0008559: xenobiotic-transporting ATPase activity	2.46E-03
54	GO:0015198: oligopeptide transporter activity	2.70E-03
55	GO:0004022: alcohol dehydrogenase (NAD) activity	2.94E-03
56	GO:0008083: growth factor activity	3.19E-03
57	GO:0008061: chitin binding	3.44E-03
58	GO:0004867: serine-type endopeptidase inhibitor activity	3.44E-03
59	GO:0016758: transferase activity, transferring hexosyl groups	3.48E-03
60	GO:0035251: UDP-glucosyltransferase activity	4.54E-03
61	GO:0005351: sugar:proton symporter activity	4.80E-03
62	GO:0005199: structural constituent of cell wall	6.38E-03
63	GO:0010181: FMN binding	6.70E-03
64	GO:0005355: glucose transmembrane transporter activity	6.70E-03
65	GO:0051213: dioxygenase activity	9.54E-03
66	GO:0005096: GTPase activator activity	1.19E-02
67	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.36E-02
68	GO:0050661: NADP binding	1.49E-02
69	GO:0051287: NAD binding	1.86E-02
70	GO:0031625: ubiquitin protein ligase binding	2.16E-02
71	GO:0045330: aspartyl esterase activity	2.16E-02
72	GO:0016887: ATPase activity	2.16E-02
73	GO:0045735: nutrient reservoir activity	2.26E-02
74	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.42E-02
75	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.42E-02
76	GO:0030599: pectinesterase activity	2.47E-02
77	GO:0022857: transmembrane transporter activity	2.47E-02
78	GO:0016746: transferase activity, transferring acyl groups	2.64E-02
79	GO:0004674: protein serine/threonine kinase activity	2.66E-02
80	GO:0015144: carbohydrate transmembrane transporter activity	3.44E-02
81	GO:0005507: copper ion binding	3.52E-02
82	GO:0046910: pectinesterase inhibitor activity	3.63E-02
83	GO:0015297: antiporter activity	3.69E-02
84	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.67E-06
2	GO:0045252: oxoglutarate dehydrogenase complex	7.23E-05
3	GO:0005740: mitochondrial envelope	7.98E-05
4	GO:0005618: cell wall	8.20E-05
5	GO:0016021: integral component of membrane	2.91E-04
6	GO:0030130: clathrin coat of trans-Golgi network vesicle	2.93E-04
7	GO:0030132: clathrin coat of coated pit	2.93E-04
8	GO:0009530: primary cell wall	2.93E-04
9	GO:0048046: apoplast	1.26E-03
10	GO:0005794: Golgi apparatus	1.29E-03
11	GO:0016020: membrane	1.44E-03
12	GO:0005576: extracellular region	1.52E-03
13	GO:0031307: integral component of mitochondrial outer membrane	2.70E-03
14	GO:0031012: extracellular matrix	2.94E-03
15	GO:0005829: cytosol	4.79E-03
16	GO:0009506: plasmodesma	5.47E-03
17	GO:0005770: late endosome	6.38E-03
18	GO:0046658: anchored component of plasma membrane	6.49E-03
19	GO:0031965: nuclear membrane	7.04E-03
20	GO:0071944: cell periphery	8.07E-03
21	GO:0005802: trans-Golgi network	8.42E-03
22	GO:0005768: endosome	9.92E-03
23	GO:0019005: SCF ubiquitin ligase complex	1.15E-02
24	GO:0000325: plant-type vacuole	1.27E-02
25	GO:0009570: chloroplast stroma	1.32E-02
26	GO:0009536: plastid	1.47E-02
27	GO:0005774: vacuolar membrane	1.58E-02
28	GO:0010008: endosome membrane	2.31E-02
29	GO:0031225: anchored component of membrane	3.86E-02
30	GO:0005622: intracellular	4.38E-02