co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006592: ornithine biosynthetic process	0.00E+00
2	GO:0007160: cell-matrix adhesion	0.00E+00
3	GO:0042430: indole-containing compound metabolic process	0.00E+00
4	GO:0010398: xylogalacturonan metabolic process	0.00E+00
5	GO:0046686: response to cadmium ion	2.21E-06
6	GO:0006097: glyoxylate cycle	1.55E-05
7	GO:0015991: ATP hydrolysis coupled proton transport	2.87E-05
8	GO:0006096: glycolytic process	3.41E-05
9	GO:0006102: isocitrate metabolic process	5.89E-05
10	GO:1990542: mitochondrial transmembrane transport	1.02E-04
11	GO:0042964: thioredoxin reduction	1.02E-04
12	GO:0010265: SCF complex assembly	1.02E-04
13	GO:0019605: butyrate metabolic process	1.02E-04
14	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.02E-04
15	GO:0006083: acetate metabolic process	1.02E-04
16	GO:0006820: anion transport	1.82E-04
17	GO:0006094: gluconeogenesis	2.09E-04
18	GO:0051788: response to misfolded protein	2.40E-04
19	GO:0006101: citrate metabolic process	2.40E-04
20	GO:1990069: stomatal opening	2.40E-04
21	GO:0009735: response to cytokinin	2.72E-04
22	GO:0061158: 3'-UTR-mediated mRNA destabilization	3.99E-04
23	GO:0015992: proton transport	4.03E-04
24	GO:0009647: skotomorphogenesis	5.73E-04
25	GO:0001676: long-chain fatty acid metabolic process	5.73E-04
26	GO:0015986: ATP synthesis coupled proton transport	7.02E-04
27	GO:0030163: protein catabolic process	9.07E-04
28	GO:0036065: fucosylation	9.62E-04
29	GO:0006564: L-serine biosynthetic process	9.62E-04
30	GO:0006979: response to oxidative stress	1.14E-03
31	GO:0043248: proteasome assembly	1.17E-03
32	GO:0042176: regulation of protein catabolic process	1.17E-03
33	GO:1901001: negative regulation of response to salt stress	1.40E-03
34	GO:0006694: steroid biosynthetic process	1.40E-03
35	GO:0009817: defense response to fungus, incompatible interaction	1.47E-03
36	GO:0010044: response to aluminum ion	1.65E-03
37	GO:0009610: response to symbiotic fungus	1.65E-03
38	GO:0048528: post-embryonic root development	1.65E-03
39	GO:0042773: ATP synthesis coupled electron transport	1.65E-03
40	GO:0009853: photorespiration	1.85E-03
41	GO:0031540: regulation of anthocyanin biosynthetic process	1.90E-03
42	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.90E-03
43	GO:0009819: drought recovery	1.90E-03
44	GO:0006099: tricarboxylic acid cycle	1.94E-03
45	GO:0019430: removal of superoxide radicals	2.17E-03
46	GO:0006526: arginine biosynthetic process	2.17E-03
47	GO:0006631: fatty acid metabolic process	2.19E-03
48	GO:0098656: anion transmembrane transport	2.45E-03
49	GO:0006098: pentose-phosphate shunt	2.45E-03
50	GO:0006754: ATP biosynthetic process	2.45E-03
51	GO:0006511: ubiquitin-dependent protein catabolic process	2.68E-03
52	GO:0009651: response to salt stress	2.74E-03
53	GO:0043067: regulation of programmed cell death	2.74E-03
54	GO:0055114: oxidation-reduction process	2.98E-03
55	GO:0051603: proteolysis involved in cellular protein catabolic process	3.30E-03
56	GO:0072593: reactive oxygen species metabolic process	3.36E-03
57	GO:0016485: protein processing	3.36E-03
58	GO:0048316: seed development	3.89E-03
59	GO:0002237: response to molecule of bacterial origin	4.37E-03
60	GO:0009969: xyloglucan biosynthetic process	4.72E-03
61	GO:0090351: seedling development	4.72E-03
62	GO:0034976: response to endoplasmic reticulum stress	5.09E-03
63	GO:0006487: protein N-linked glycosylation	5.46E-03
64	GO:0010073: meristem maintenance	5.85E-03
65	GO:0009695: jasmonic acid biosynthetic process	5.85E-03
66	GO:0031408: oxylipin biosynthetic process	6.24E-03
67	GO:0042744: hydrogen peroxide catabolic process	6.44E-03
68	GO:0030245: cellulose catabolic process	6.64E-03
69	GO:0006413: translational initiation	7.28E-03
70	GO:0010118: stomatal movement	8.35E-03
71	GO:0000413: protein peptidyl-prolyl isomerization	8.35E-03
72	GO:0010051: xylem and phloem pattern formation	8.35E-03
73	GO:0045489: pectin biosynthetic process	8.80E-03
74	GO:0010197: polar nucleus fusion	8.80E-03
75	GO:0009617: response to bacterium	9.32E-03
76	GO:0006623: protein targeting to vacuole	9.73E-03
77	GO:0048825: cotyledon development	9.73E-03
78	GO:0009749: response to glucose	9.73E-03
79	GO:0010193: response to ozone	1.02E-02
80	GO:0055085: transmembrane transport	1.13E-02
81	GO:0051607: defense response to virus	1.27E-02
82	GO:0016126: sterol biosynthetic process	1.32E-02
83	GO:0006950: response to stress	1.48E-02
84	GO:0009737: response to abscisic acid	1.54E-02
85	GO:0016049: cell growth	1.54E-02
86	GO:0016192: vesicle-mediated transport	1.58E-02
87	GO:0030244: cellulose biosynthetic process	1.60E-02
88	GO:0044550: secondary metabolite biosynthetic process	1.63E-02
89	GO:0009832: plant-type cell wall biogenesis	1.65E-02
90	GO:0006811: ion transport	1.71E-02
91	GO:0010043: response to zinc ion	1.77E-02
92	GO:0010119: regulation of stomatal movement	1.77E-02
93	GO:0045454: cell redox homeostasis	1.80E-02
94	GO:0006886: intracellular protein transport	1.86E-02
95	GO:0045087: innate immune response	1.89E-02
96	GO:0009414: response to water deprivation	1.99E-02
97	GO:0071555: cell wall organization	2.05E-02
98	GO:0009751: response to salicylic acid	2.19E-02
99	GO:0009408: response to heat	2.22E-02
100	GO:0051707: response to other organism	2.26E-02
101	GO:0006855: drug transmembrane transport	2.52E-02
102	GO:0009664: plant-type cell wall organization	2.66E-02
103	GO:0009846: pollen germination	2.66E-02
104	GO:0006486: protein glycosylation	2.80E-02
105	GO:0009736: cytokinin-activated signaling pathway	2.80E-02
106	GO:0009626: plant-type hypersensitive response	3.30E-02
107	GO:0009624: response to nematode	3.59E-02
108	GO:0051726: regulation of cell cycle	3.75E-02
109	GO:0009790: embryo development	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0033919: glucan 1,3-alpha-glucosidase activity	0.00E+00
4	GO:0015926: glucosidase activity	0.00E+00
5	GO:0008777: acetylornithine deacetylase activity	0.00E+00
6	GO:0015288: porin activity	5.89E-05
7	GO:0008308: voltage-gated anion channel activity	7.46E-05
8	GO:0004347: glucose-6-phosphate isomerase activity	1.02E-04
9	GO:0003987: acetate-CoA ligase activity	1.02E-04
10	GO:0047760: butyrate-CoA ligase activity	1.02E-04
11	GO:0004321: fatty-acyl-CoA synthase activity	1.02E-04
12	GO:0004618: phosphoglycerate kinase activity	2.40E-04
13	GO:0004617: phosphoglycerate dehydrogenase activity	2.40E-04
14	GO:0003994: aconitate hydratase activity	2.40E-04
15	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	2.40E-04
16	GO:0008517: folic acid transporter activity	2.40E-04
17	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	3.99E-04
18	GO:0004298: threonine-type endopeptidase activity	4.03E-04
19	GO:0017077: oxidative phosphorylation uncoupler activity	5.73E-04
20	GO:0004449: isocitrate dehydrogenase (NAD+) activity	5.73E-04
21	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	6.55E-04
22	GO:0004576: oligosaccharyl transferase activity	7.62E-04
23	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	9.62E-04
24	GO:0004040: amidase activity	9.62E-04
25	GO:0008237: metallopeptidase activity	1.02E-03
26	GO:0004332: fructose-bisphosphate aldolase activity	1.17E-03
27	GO:0031593: polyubiquitin binding	1.17E-03
28	GO:0016208: AMP binding	1.17E-03
29	GO:0035252: UDP-xylosyltransferase activity	1.17E-03
30	GO:0016887: ATPase activity	1.37E-03
31	GO:0102391: decanoate--CoA ligase activity	1.40E-03
32	GO:0004656: procollagen-proline 4-dioxygenase activity	1.40E-03
33	GO:0004222: metalloendopeptidase activity	1.62E-03
34	GO:0004467: long-chain fatty acid-CoA ligase activity	1.65E-03
35	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.65E-03
36	GO:0000287: magnesium ion binding	1.84E-03
37	GO:0051539: 4 iron, 4 sulfur cluster binding	2.11E-03
38	GO:0015078: hydrogen ion transmembrane transporter activity	2.17E-03
39	GO:0008233: peptidase activity	2.42E-03
40	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	2.45E-03
41	GO:0008417: fucosyltransferase activity	2.45E-03
42	GO:0016207: 4-coumarate-CoA ligase activity	2.45E-03
43	GO:0020037: heme binding	2.50E-03
44	GO:0030955: potassium ion binding	2.74E-03
45	GO:0004743: pyruvate kinase activity	2.74E-03
46	GO:0051287: NAD binding	2.87E-03
47	GO:0030234: enzyme regulator activity	3.05E-03
48	GO:0008559: xenobiotic-transporting ATPase activity	3.36E-03
49	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.36E-03
50	GO:0008266: poly(U) RNA binding	4.37E-03
51	GO:0005506: iron ion binding	4.79E-03
52	GO:0051536: iron-sulfur cluster binding	5.46E-03
53	GO:0031418: L-ascorbic acid binding	5.46E-03
54	GO:0003954: NADH dehydrogenase activity	5.46E-03
55	GO:0043130: ubiquitin binding	5.46E-03
56	GO:0005524: ATP binding	5.67E-03
57	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.81E-03
58	GO:0004176: ATP-dependent peptidase activity	6.24E-03
59	GO:0008810: cellulase activity	7.06E-03
60	GO:0003727: single-stranded RNA binding	7.48E-03
61	GO:0003756: protein disulfide isomerase activity	7.48E-03
62	GO:0005199: structural constituent of cell wall	8.80E-03
63	GO:0001085: RNA polymerase II transcription factor binding	8.80E-03
64	GO:0003743: translation initiation factor activity	9.12E-03
65	GO:0004791: thioredoxin-disulfide reductase activity	9.26E-03
66	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	9.93E-03
67	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.02E-02
68	GO:0004601: peroxidase activity	1.21E-02
69	GO:0016597: amino acid binding	1.27E-02
70	GO:0005507: copper ion binding	1.31E-02
71	GO:0019825: oxygen binding	1.31E-02
72	GO:0004497: monooxygenase activity	1.50E-02
73	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.77E-02
74	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.89E-02
75	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.95E-02
76	GO:0051537: 2 iron, 2 sulfur cluster binding	2.39E-02
77	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.52E-02
78	GO:0003729: mRNA binding	3.37E-02
79	GO:0016874: ligase activity	3.44E-02
80	GO:0000166: nucleotide binding	3.93E-02
81	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0008305: integrin complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0005774: vacuolar membrane	3.56E-13
4	GO:0009506: plasmodesma	4.35E-07
5	GO:0005794: Golgi apparatus	4.65E-07
6	GO:0005773: vacuole	9.09E-07
7	GO:0000502: proteasome complex	9.19E-07
8	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	9.35E-06
9	GO:0005829: cytosol	9.38E-06
10	GO:0005783: endoplasmic reticulum	2.14E-05
11	GO:0046930: pore complex	7.46E-05
12	GO:0000325: plant-type vacuole	1.46E-04
13	GO:0016020: membrane	1.99E-04
14	GO:0005886: plasma membrane	2.63E-04
15	GO:0005753: mitochondrial proton-transporting ATP synthase complex	2.67E-04
16	GO:0046861: glyoxysomal membrane	3.99E-04
17	GO:0030124: AP-4 adaptor complex	3.99E-04
18	GO:0009530: primary cell wall	3.99E-04
19	GO:0005839: proteasome core complex	4.03E-04
20	GO:0005741: mitochondrial outer membrane	4.03E-04
21	GO:0005802: trans-Golgi network	7.52E-04
22	GO:0033179: proton-transporting V-type ATPase, V0 domain	7.62E-04
23	GO:0008250: oligosaccharyltransferase complex	9.62E-04
24	GO:0005851: eukaryotic translation initiation factor 2B complex	1.17E-03
25	GO:0030131: clathrin adaptor complex	1.90E-03
26	GO:0005777: peroxisome	2.07E-03
27	GO:0000326: protein storage vacuole	2.17E-03
28	GO:0009514: glyoxysome	2.17E-03
29	GO:0008540: proteasome regulatory particle, base subcomplex	2.74E-03
30	GO:0017119: Golgi transport complex	3.05E-03
31	GO:0030125: clathrin vesicle coat	3.05E-03
32	GO:0008541: proteasome regulatory particle, lid subcomplex	3.36E-03
33	GO:0005747: mitochondrial respiratory chain complex I	3.89E-03
34	GO:0005768: endosome	4.18E-03
35	GO:0005750: mitochondrial respiratory chain complex III	4.37E-03
36	GO:0045271: respiratory chain complex I	5.85E-03
37	GO:0005905: clathrin-coated pit	6.24E-03
38	GO:0009536: plastid	6.69E-03
39	GO:0016021: integral component of membrane	8.03E-03
40	GO:0032580: Golgi cisterna membrane	1.17E-02
41	GO:0005788: endoplasmic reticulum lumen	1.38E-02
42	GO:0005667: transcription factor complex	1.43E-02
43	GO:0005739: mitochondrion	1.44E-02
44	GO:0009941: chloroplast envelope	1.67E-02
45	GO:0015934: large ribosomal subunit	1.77E-02
46	GO:0005743: mitochondrial inner membrane	2.07E-02
47	GO:0031966: mitochondrial membrane	2.66E-02
48	GO:0009507: chloroplast	3.17E-02
49	GO:0005789: endoplasmic reticulum membrane	3.48E-02
50	GO:0005618: cell wall	3.85E-02
51	GO:0010287: plastoglobule	4.06E-02
52	GO:0005759: mitochondrial matrix	4.95E-02