Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006044: N-acetylglucosamine metabolic process0.00E+00
2GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA0.00E+00
3GO:0034398: telomere tethering at nuclear periphery9.72E-05
4GO:0044419: interspecies interaction between organisms9.72E-05
5GO:0009653: anatomical structure morphogenesis1.68E-04
6GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.68E-04
7GO:0010476: gibberellin mediated signaling pathway1.68E-04
8GO:0010325: raffinose family oligosaccharide biosynthetic process1.68E-04
9GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.68E-04
10GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery2.48E-04
11GO:0032502: developmental process2.48E-04
12GO:0009939: positive regulation of gibberellic acid mediated signaling pathway3.33E-04
13GO:0006749: glutathione metabolic process3.33E-04
14GO:0009117: nucleotide metabolic process5.22E-04
15GO:0051568: histone H3-K4 methylation5.22E-04
16GO:0045962: positive regulation of development, heterochronic5.22E-04
17GO:0000741: karyogamy5.22E-04
18GO:0048444: floral organ morphogenesis6.22E-04
19GO:0010555: response to mannitol6.22E-04
20GO:2000067: regulation of root morphogenesis6.22E-04
21GO:0032259: methylation7.81E-04
22GO:0009965: leaf morphogenesis7.89E-04
23GO:0042255: ribosome assembly8.37E-04
24GO:0010100: negative regulation of photomorphogenesis9.50E-04
25GO:0006526: arginine biosynthetic process9.50E-04
26GO:0007186: G-protein coupled receptor signaling pathway9.50E-04
27GO:0009056: catabolic process1.07E-03
28GO:0048507: meristem development1.07E-03
29GO:0009870: defense response signaling pathway, resistance gene-dependent1.31E-03
30GO:0072593: reactive oxygen species metabolic process1.44E-03
31GO:0009750: response to fructose1.44E-03
32GO:0080188: RNA-directed DNA methylation2.01E-03
33GO:0034976: response to endoplasmic reticulum stress2.16E-03
34GO:0006406: mRNA export from nucleus2.32E-03
35GO:0016575: histone deacetylation2.48E-03
36GO:0006874: cellular calcium ion homeostasis2.48E-03
37GO:0006306: DNA methylation2.64E-03
38GO:0016226: iron-sulfur cluster assembly2.80E-03
39GO:0051028: mRNA transport3.32E-03
40GO:0080022: primary root development3.50E-03
41GO:0006606: protein import into nucleus3.50E-03
42GO:0010197: polar nucleus fusion3.69E-03
43GO:0009749: response to glucose4.06E-03
44GO:0031047: gene silencing by RNA4.45E-03
45GO:0010090: trichome morphogenesis4.65E-03
46GO:0045454: cell redox homeostasis5.05E-03
47GO:0006974: cellular response to DNA damage stimulus5.91E-03
48GO:0006281: DNA repair6.23E-03
49GO:0048364: root development6.50E-03
50GO:0006499: N-terminal protein myristoylation7.04E-03
51GO:0009407: toxin catabolic process7.04E-03
52GO:0009910: negative regulation of flower development7.27E-03
53GO:0009926: auxin polar transport9.25E-03
54GO:0009744: response to sucrose9.25E-03
55GO:0009636: response to toxic substance1.00E-02
56GO:0009585: red, far-red light phototransduction1.14E-02
57GO:0010224: response to UV-B1.17E-02
58GO:0009909: regulation of flower development1.23E-02
59GO:0016569: covalent chromatin modification1.40E-02
60GO:0006396: RNA processing1.49E-02
61GO:0051726: regulation of cell cycle1.52E-02
62GO:0040008: regulation of growth2.09E-02
63GO:0009451: RNA modification2.19E-02
64GO:0009739: response to gibberellin2.34E-02
65GO:0030154: cell differentiation2.45E-02
66GO:0008380: RNA splicing2.45E-02
67GO:0009733: response to auxin2.52E-02
68GO:0009826: unidimensional cell growth2.86E-02
69GO:0009658: chloroplast organization2.94E-02
70GO:0042254: ribosome biogenesis2.98E-02
71GO:0006970: response to osmotic stress3.10E-02
72GO:0048366: leaf development3.31E-02
73GO:0080167: response to karrikin3.43E-02
74GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.51E-02
75GO:0009408: response to heat4.53E-02
76GO:0009737: response to abscisic acid4.76E-02
77GO:0008152: metabolic process4.85E-02
RankGO TermAdjusted P value
1GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity0.00E+00
2GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity0.00E+00
3GO:0010331: gibberellin binding9.72E-05
4GO:0015929: hexosaminidase activity9.72E-05
5GO:0004563: beta-N-acetylhexosaminidase activity9.72E-05
6GO:0001664: G-protein coupled receptor binding1.68E-04
7GO:0031683: G-protein beta/gamma-subunit complex binding1.68E-04
8GO:0035529: NADH pyrophosphatase activity2.48E-04
9GO:0008168: methyltransferase activity3.67E-04
10GO:0004525: ribonuclease III activity8.37E-04
11GO:0017056: structural constituent of nuclear pore8.37E-04
12GO:0015288: porin activity8.37E-04
13GO:0005487: nucleocytoplasmic transporter activity1.19E-03
14GO:0008047: enzyme activator activity1.31E-03
15GO:0019843: rRNA binding1.63E-03
16GO:0008139: nuclear localization sequence binding1.72E-03
17GO:0008131: primary amine oxidase activity1.86E-03
18GO:0004970: ionotropic glutamate receptor activity2.01E-03
19GO:0005217: intracellular ligand-gated ion channel activity2.01E-03
20GO:0033612: receptor serine/threonine kinase binding2.64E-03
21GO:0035251: UDP-glucosyltransferase activity2.64E-03
22GO:0003756: protein disulfide isomerase activity3.15E-03
23GO:0003727: single-stranded RNA binding3.15E-03
24GO:0008080: N-acetyltransferase activity3.69E-03
25GO:0008375: acetylglucosaminyltransferase activity5.91E-03
26GO:0003746: translation elongation factor activity7.75E-03
27GO:0004364: glutathione transferase activity8.99E-03
28GO:0051537: 2 iron, 2 sulfur cluster binding9.77E-03
29GO:0008234: cysteine-type peptidase activity1.23E-02
30GO:0015035: protein disulfide oxidoreductase activity1.49E-02
31GO:0004386: helicase activity1.56E-02
32GO:0030170: pyridoxal phosphate binding1.85E-02
33GO:0042802: identical protein binding2.56E-02
34GO:0043531: ADP binding3.14E-02
35GO:0042803: protein homodimerization activity4.03E-02
36GO:0004871: signal transducer activity4.03E-02
37GO:0003924: GTPase activity4.53E-02
38GO:0009055: electron carrier activity4.76E-02
39GO:0016787: hydrolase activity4.79E-02
40GO:0004519: endonuclease activity4.80E-02
RankGO TermAdjusted P value
1GO:0044614: nuclear pore cytoplasmic filaments1.68E-04
2GO:0000419: DNA-directed RNA polymerase V complex2.16E-03
3GO:0031965: nuclear membrane4.06E-03
4GO:0005635: nuclear envelope1.20E-02
5GO:0005834: heterotrimeric G-protein complex1.34E-02
6GO:0080008: Cul4-RING E3 ubiquitin ligase complex3.14E-02
7GO:0005773: vacuole3.35E-02
8GO:0043231: intracellular membrane-bounded organelle4.85E-02
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Gene type



Gene DE type