co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
5	GO:0090279: regulation of calcium ion import	0.00E+00
6	GO:0071474: cellular hyperosmotic response	0.00E+00
7	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
8	GO:0002184: cytoplasmic translational termination	0.00E+00
9	GO:0030155: regulation of cell adhesion	0.00E+00
10	GO:0015979: photosynthesis	1.59E-15
11	GO:0006412: translation	6.00E-14
12	GO:0032544: plastid translation	5.59E-13
13	GO:0042254: ribosome biogenesis	1.36E-10
14	GO:0010027: thylakoid membrane organization	9.12E-09
15	GO:0009773: photosynthetic electron transport in photosystem I	1.39E-07
16	GO:0009735: response to cytokinin	3.50E-07
17	GO:0015995: chlorophyll biosynthetic process	6.47E-07
18	GO:0009658: chloroplast organization	1.56E-05
19	GO:0009768: photosynthesis, light harvesting in photosystem I	4.22E-05
20	GO:0009409: response to cold	1.47E-04
21	GO:0006438: valyl-tRNA aminoacylation	1.80E-04
22	GO:0043953: protein transport by the Tat complex	1.80E-04
23	GO:0065002: intracellular protein transmembrane transport	1.80E-04
24	GO:0080093: regulation of photorespiration	1.80E-04
25	GO:0031998: regulation of fatty acid beta-oxidation	1.80E-04
26	GO:1902458: positive regulation of stomatal opening	1.80E-04
27	GO:0010206: photosystem II repair	2.13E-04
28	GO:0018298: protein-chromophore linkage	3.44E-04
29	GO:0045037: protein import into chloroplast stroma	4.00E-04
30	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.05E-04
31	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.05E-04
32	GO:0010270: photosystem II oxygen evolving complex assembly	4.05E-04
33	GO:0051262: protein tetramerization	4.05E-04
34	GO:0006000: fructose metabolic process	6.61E-04
35	GO:0006518: peptide metabolic process	6.61E-04
36	GO:0016050: vesicle organization	6.61E-04
37	GO:0048281: inflorescence morphogenesis	6.61E-04
38	GO:0006418: tRNA aminoacylation for protein translation	7.77E-04
39	GO:0061077: chaperone-mediated protein folding	8.51E-04
40	GO:0010148: transpiration	9.45E-04
41	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.45E-04
42	GO:0051085: chaperone mediated protein folding requiring cofactor	9.45E-04
43	GO:0042742: defense response to bacterium	1.19E-03
44	GO:0006546: glycine catabolic process	1.25E-03
45	GO:0010021: amylopectin biosynthetic process	1.25E-03
46	GO:0006808: regulation of nitrogen utilization	1.25E-03
47	GO:0015976: carbon utilization	1.25E-03
48	GO:0051322: anaphase	1.25E-03
49	GO:0019464: glycine decarboxylation via glycine cleavage system	1.25E-03
50	GO:0045727: positive regulation of translation	1.25E-03
51	GO:0016120: carotene biosynthetic process	1.59E-03
52	GO:0000304: response to singlet oxygen	1.59E-03
53	GO:0045038: protein import into chloroplast thylakoid membrane	1.59E-03
54	GO:0006097: glyoxylate cycle	1.59E-03
55	GO:0006461: protein complex assembly	1.59E-03
56	GO:0006828: manganese ion transport	1.96E-03
57	GO:0010190: cytochrome b6f complex assembly	1.96E-03
58	GO:0042549: photosystem II stabilization	1.96E-03
59	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.96E-03
60	GO:0000470: maturation of LSU-rRNA	1.96E-03
61	GO:0042026: protein refolding	2.35E-03
62	GO:1901259: chloroplast rRNA processing	2.35E-03
63	GO:0009790: embryo development	2.35E-03
64	GO:0009955: adaxial/abaxial pattern specification	2.35E-03
65	GO:0010196: nonphotochemical quenching	2.77E-03
66	GO:0070370: cellular heat acclimation	2.77E-03
67	GO:0009645: response to low light intensity stimulus	2.77E-03
68	GO:0010103: stomatal complex morphogenesis	2.77E-03
69	GO:0005978: glycogen biosynthetic process	3.21E-03
70	GO:2000070: regulation of response to water deprivation	3.21E-03
71	GO:0007186: G-protein coupled receptor signaling pathway	3.67E-03
72	GO:0009657: plastid organization	3.67E-03
73	GO:0001558: regulation of cell growth	3.67E-03
74	GO:0006002: fructose 6-phosphate metabolic process	3.67E-03
75	GO:0015996: chlorophyll catabolic process	3.67E-03
76	GO:0005982: starch metabolic process	4.65E-03
77	GO:0010205: photoinhibition	4.65E-03
78	GO:0006779: porphyrin-containing compound biosynthetic process	4.65E-03
79	GO:0006782: protoporphyrinogen IX biosynthetic process	5.18E-03
80	GO:0006415: translational termination	5.72E-03
81	GO:0019684: photosynthesis, light reaction	5.72E-03
82	GO:0009073: aromatic amino acid family biosynthetic process	5.72E-03
83	GO:0000272: polysaccharide catabolic process	5.72E-03
84	GO:0018119: peptidyl-cysteine S-nitrosylation	5.72E-03
85	GO:0006816: calcium ion transport	5.72E-03
86	GO:0009793: embryo development ending in seed dormancy	6.22E-03
87	GO:0010102: lateral root morphogenesis	6.86E-03
88	GO:0006108: malate metabolic process	6.86E-03
89	GO:0030036: actin cytoskeleton organization	6.86E-03
90	GO:0006094: gluconeogenesis	6.86E-03
91	GO:0005986: sucrose biosynthetic process	6.86E-03
92	GO:0006364: rRNA processing	6.90E-03
93	GO:0019253: reductive pentose-phosphate cycle	7.46E-03
94	GO:0010207: photosystem II assembly	7.46E-03
95	GO:0005985: sucrose metabolic process	8.08E-03
96	GO:0006810: transport	8.71E-03
97	GO:0006636: unsaturated fatty acid biosynthetic process	8.71E-03
98	GO:0000027: ribosomal large subunit assembly	9.37E-03
99	GO:0009944: polarity specification of adaxial/abaxial axis	9.37E-03
100	GO:0051302: regulation of cell division	1.00E-02
101	GO:0031408: oxylipin biosynthetic process	1.07E-02
102	GO:0016114: terpenoid biosynthetic process	1.07E-02
103	GO:0007005: mitochondrion organization	1.14E-02
104	GO:0001944: vasculature development	1.22E-02
105	GO:0016117: carotenoid biosynthetic process	1.37E-02
106	GO:0042631: cellular response to water deprivation	1.44E-02
107	GO:0010182: sugar mediated signaling pathway	1.52E-02
108	GO:0019252: starch biosynthetic process	1.68E-02
109	GO:0071554: cell wall organization or biogenesis	1.77E-02
110	GO:0010583: response to cyclopentenone	1.85E-02
111	GO:0030163: protein catabolic process	1.94E-02
112	GO:0009567: double fertilization forming a zygote and endosperm	2.03E-02
113	GO:0000910: cytokinesis	2.20E-02
114	GO:0009627: systemic acquired resistance	2.48E-02
115	GO:0009817: defense response to fungus, incompatible interaction	2.77E-02
116	GO:0048481: plant ovule development	2.77E-02
117	GO:0008219: cell death	2.77E-02
118	GO:0006499: N-terminal protein myristoylation	2.97E-02
119	GO:0010218: response to far red light	2.97E-02
120	GO:0009637: response to blue light	3.28E-02
121	GO:0006099: tricarboxylic acid cycle	3.39E-02
122	GO:0010114: response to red light	3.93E-02
123	GO:0009644: response to high light intensity	4.16E-02
124	GO:0009965: leaf morphogenesis	4.27E-02
125	GO:0009664: plant-type cell wall organization	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
2	GO:0016166: phytoene dehydrogenase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
8	GO:0019843: rRNA binding	9.83E-21
9	GO:0003735: structural constituent of ribosome	1.07E-15
10	GO:0016851: magnesium chelatase activity	1.33E-05
11	GO:0031409: pigment binding	3.03E-05
12	GO:0005528: FK506 binding	3.60E-05
13	GO:0045485: omega-6 fatty acid desaturase activity	1.80E-04
14	GO:0004832: valine-tRNA ligase activity	1.80E-04
15	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.80E-04
16	GO:0005227: calcium activated cation channel activity	1.80E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.80E-04
18	GO:0016168: chlorophyll binding	2.60E-04
19	GO:0008967: phosphoglycolate phosphatase activity	4.05E-04
20	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.05E-04
21	GO:0010297: heteropolysaccharide binding	4.05E-04
22	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.05E-04
23	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.05E-04
24	GO:0017150: tRNA dihydrouridine synthase activity	6.61E-04
25	GO:0002161: aminoacyl-tRNA editing activity	6.61E-04
26	GO:0043169: cation binding	6.61E-04
27	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.84E-04
28	GO:0016149: translation release factor activity, codon specific	9.45E-04
29	GO:0043023: ribosomal large subunit binding	9.45E-04
30	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	9.45E-04
31	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.45E-04
32	GO:0004812: aminoacyl-tRNA ligase activity	1.18E-03
33	GO:0019199: transmembrane receptor protein kinase activity	1.25E-03
34	GO:0042277: peptide binding	1.25E-03
35	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.25E-03
36	GO:0004040: amidase activity	1.59E-03
37	GO:0016615: malate dehydrogenase activity	1.96E-03
38	GO:0030060: L-malate dehydrogenase activity	2.35E-03
39	GO:0005261: cation channel activity	2.35E-03
40	GO:0051920: peroxiredoxin activity	2.35E-03
41	GO:0004033: aldo-keto reductase (NADP) activity	3.21E-03
42	GO:0016209: antioxidant activity	3.21E-03
43	GO:0004222: metalloendopeptidase activity	3.47E-03
44	GO:0003747: translation release factor activity	4.15E-03
45	GO:0005384: manganese ion transmembrane transporter activity	4.65E-03
46	GO:0044183: protein binding involved in protein folding	5.72E-03
47	GO:0000049: tRNA binding	6.28E-03
48	GO:0004089: carbonate dehydratase activity	6.86E-03
49	GO:0015095: magnesium ion transmembrane transporter activity	6.86E-03
50	GO:0031072: heat shock protein binding	6.86E-03
51	GO:0016491: oxidoreductase activity	7.20E-03
52	GO:0008266: poly(U) RNA binding	7.46E-03
53	GO:0051082: unfolded protein binding	9.83E-03
54	GO:0003964: RNA-directed DNA polymerase activity	1.07E-02
55	GO:0003756: protein disulfide isomerase activity	1.29E-02
56	GO:0005509: calcium ion binding	1.42E-02
57	GO:0050662: coenzyme binding	1.60E-02
58	GO:0048038: quinone binding	1.77E-02
59	GO:0008483: transaminase activity	2.11E-02
60	GO:0008237: metallopeptidase activity	2.11E-02
61	GO:0005200: structural constituent of cytoskeleton	2.11E-02
62	GO:0016413: O-acetyltransferase activity	2.20E-02
63	GO:0000287: magnesium ion binding	2.59E-02
64	GO:0008236: serine-type peptidase activity	2.68E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0042579: microbody	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0009507: chloroplast	4.81E-65
6	GO:0009941: chloroplast envelope	2.64E-45
7	GO:0009570: chloroplast stroma	8.97E-41
8	GO:0009535: chloroplast thylakoid membrane	1.21E-39
9	GO:0009534: chloroplast thylakoid	1.14E-34
10	GO:0009579: thylakoid	3.67E-22
11	GO:0005840: ribosome	5.41E-17
12	GO:0009543: chloroplast thylakoid lumen	2.57E-12
13	GO:0031977: thylakoid lumen	2.20E-09
14	GO:0010287: plastoglobule	2.24E-09
15	GO:0030095: chloroplast photosystem II	3.99E-09
16	GO:0010319: stromule	2.98E-07
17	GO:0009654: photosystem II oxygen evolving complex	9.93E-07
18	GO:0009538: photosystem I reaction center	2.20E-06
19	GO:0019898: extrinsic component of membrane	5.27E-06
20	GO:0010007: magnesium chelatase complex	5.74E-06
21	GO:0009706: chloroplast inner membrane	1.65E-05
22	GO:0009533: chloroplast stromal thylakoid	1.09E-04
23	GO:0009522: photosystem I	1.17E-04
24	GO:0048046: apoplast	1.69E-04
25	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.80E-04
26	GO:0009783: photosystem II antenna complex	1.80E-04
27	GO:0031361: integral component of thylakoid membrane	1.80E-04
28	GO:0009782: photosystem I antenna complex	1.80E-04
29	GO:0009295: nucleoid	2.05E-04
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.13E-04
31	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.05E-04
32	GO:0015934: large ribosomal subunit	4.17E-04
33	GO:0009508: plastid chromosome	4.55E-04
34	GO:0016020: membrane	5.16E-04
35	GO:0030076: light-harvesting complex	5.74E-04
36	GO:0009509: chromoplast	6.61E-04
37	GO:0033281: TAT protein transport complex	6.61E-04
38	GO:0009528: plastid inner membrane	6.61E-04
39	GO:0015935: small ribosomal subunit	8.51E-04
40	GO:0005960: glycine cleavage complex	9.45E-04
41	GO:0009527: plastid outer membrane	1.25E-03
42	GO:0031969: chloroplast membrane	1.28E-03
43	GO:0009536: plastid	1.78E-03
44	GO:0009501: amyloplast	3.21E-03
45	GO:0005763: mitochondrial small ribosomal subunit	4.15E-03
46	GO:0022626: cytosolic ribosome	5.15E-03
47	GO:0009574: preprophase band	6.86E-03
48	GO:0022625: cytosolic large ribosomal subunit	7.07E-03
49	GO:0043234: protein complex	8.71E-03
50	GO:0042651: thylakoid membrane	1.00E-02
51	GO:0009532: plastid stroma	1.07E-02
52	GO:0009523: photosystem II	1.68E-02
53	GO:0009707: chloroplast outer membrane	2.77E-02
54	GO:0005856: cytoskeleton	4.27E-02