co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046085: adenosine metabolic process	0.00E+00
2	GO:0000740: nuclear membrane fusion	0.00E+00
3	GO:0046890: regulation of lipid biosynthetic process	0.00E+00
4	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
5	GO:0007530: sex determination	0.00E+00
6	GO:0010513: positive regulation of phosphatidylinositol biosynthetic process	0.00E+00
7	GO:0070918: production of small RNA involved in gene silencing by RNA	0.00E+00
8	GO:0006412: translation	2.15E-35
9	GO:0042254: ribosome biogenesis	5.52E-16
10	GO:0000027: ribosomal large subunit assembly	8.23E-06
11	GO:0000028: ribosomal small subunit assembly	1.41E-05
12	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.40E-04
13	GO:2001006: regulation of cellulose biosynthetic process	3.78E-04
14	GO:0031468: nuclear envelope reassembly	3.78E-04
15	GO:0045454: cell redox homeostasis	5.40E-04
16	GO:0098656: anion transmembrane transport	6.25E-04
17	GO:0000387: spliceosomal snRNP assembly	7.38E-04
18	GO:0006432: phenylalanyl-tRNA aminoacylation	8.22E-04
19	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	8.22E-04
20	GO:0071668: plant-type cell wall assembly	8.22E-04
21	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	8.22E-04
22	GO:0071712: ER-associated misfolded protein catabolic process	8.22E-04
23	GO:0055088: lipid homeostasis	8.22E-04
24	GO:0010198: synergid death	8.22E-04
25	GO:0006325: chromatin organization	8.60E-04
26	GO:0006820: anion transport	1.13E-03
27	GO:2000028: regulation of photoperiodism, flowering	1.28E-03
28	GO:0046417: chorismate metabolic process	1.33E-03
29	GO:0045793: positive regulation of cell size	1.33E-03
30	GO:0060145: viral gene silencing in virus induced gene silencing	1.33E-03
31	GO:0071494: cellular response to UV-C	1.33E-03
32	GO:0032786: positive regulation of DNA-templated transcription, elongation	1.33E-03
33	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	1.33E-03
34	GO:1902626: assembly of large subunit precursor of preribosome	1.33E-03
35	GO:0000398: mRNA splicing, via spliceosome	1.33E-03
36	GO:0009853: photorespiration	1.81E-03
37	GO:1902290: positive regulation of defense response to oomycetes	1.92E-03
38	GO:0009558: embryo sac cellularization	1.92E-03
39	GO:0032877: positive regulation of DNA endoreduplication	1.92E-03
40	GO:0051259: protein oligomerization	1.92E-03
41	GO:0070301: cellular response to hydrogen peroxide	1.92E-03
42	GO:0051085: chaperone mediated protein folding requiring cofactor	1.92E-03
43	GO:0006241: CTP biosynthetic process	1.92E-03
44	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.92E-03
45	GO:0035067: negative regulation of histone acetylation	1.92E-03
46	GO:0006165: nucleoside diphosphate phosphorylation	1.92E-03
47	GO:0006228: UTP biosynthetic process	1.92E-03
48	GO:0006487: protein N-linked glycosylation	1.99E-03
49	GO:0032366: intracellular sterol transport	2.58E-03
50	GO:0031507: heterochromatin assembly	2.58E-03
51	GO:0051781: positive regulation of cell division	2.58E-03
52	GO:0006183: GTP biosynthetic process	2.58E-03
53	GO:0006621: protein retention in ER lumen	2.58E-03
54	GO:0006749: glutathione metabolic process	2.58E-03
55	GO:0009793: embryo development ending in seed dormancy	3.09E-03
56	GO:0006544: glycine metabolic process	3.30E-03
57	GO:0006014: D-ribose metabolic process	4.08E-03
58	GO:0006563: L-serine metabolic process	4.08E-03
59	GO:0006555: methionine metabolic process	4.08E-03
60	GO:0043248: proteasome assembly	4.08E-03
61	GO:0006796: phosphate-containing compound metabolic process	4.08E-03
62	GO:0019509: L-methionine salvage from methylthioadenosine	4.92E-03
63	GO:0016569: covalent chromatin modification	5.31E-03
64	GO:0035196: production of miRNAs involved in gene silencing by miRNA	5.81E-03
65	GO:0032880: regulation of protein localization	5.81E-03
66	GO:0010286: heat acclimation	6.31E-03
67	GO:1900150: regulation of defense response to fungus	6.75E-03
68	GO:0009735: response to cytokinin	7.46E-03
69	GO:0010204: defense response signaling pathway, resistance gene-independent	7.75E-03
70	GO:0044030: regulation of DNA methylation	7.75E-03
71	GO:0009808: lignin metabolic process	7.75E-03
72	GO:0022900: electron transport chain	7.75E-03
73	GO:0048589: developmental growth	8.79E-03
74	GO:0009060: aerobic respiration	8.79E-03
75	GO:0046685: response to arsenic-containing substance	8.79E-03
76	GO:0009245: lipid A biosynthetic process	8.79E-03
77	GO:0035999: tetrahydrofolate interconversion	9.89E-03
78	GO:0010267: production of ta-siRNAs involved in RNA interference	9.89E-03
79	GO:0043069: negative regulation of programmed cell death	1.10E-02
80	GO:0016485: protein processing	1.22E-02
81	GO:0006378: mRNA polyadenylation	1.22E-02
82	GO:0072593: reactive oxygen species metabolic process	1.22E-02
83	GO:0009073: aromatic amino acid family biosynthetic process	1.22E-02
84	GO:0016925: protein sumoylation	1.34E-02
85	GO:0009617: response to bacterium	1.44E-02
86	GO:0010628: positive regulation of gene expression	1.47E-02
87	GO:0006626: protein targeting to mitochondrion	1.47E-02
88	GO:0010102: lateral root morphogenesis	1.47E-02
89	GO:0009926: auxin polar transport	1.52E-02
90	GO:0006446: regulation of translational initiation	1.60E-02
91	GO:0048467: gynoecium development	1.60E-02
92	GO:0010020: chloroplast fission	1.60E-02
93	GO:0009965: leaf morphogenesis	1.71E-02
94	GO:0006414: translational elongation	1.74E-02
95	GO:0007030: Golgi organization	1.74E-02
96	GO:0006071: glycerol metabolic process	1.88E-02
97	GO:0034976: response to endoplasmic reticulum stress	1.88E-02
98	GO:0009651: response to salt stress	1.90E-02
99	GO:0006406: mRNA export from nucleus	2.02E-02
100	GO:0006289: nucleotide-excision repair	2.02E-02
101	GO:0009863: salicylic acid mediated signaling pathway	2.02E-02
102	GO:0051302: regulation of cell division	2.17E-02
103	GO:0015992: proton transport	2.32E-02
104	GO:0010431: seed maturation	2.32E-02
105	GO:0019915: lipid storage	2.32E-02
106	GO:0006306: DNA methylation	2.32E-02
107	GO:0046686: response to cadmium ion	2.39E-02
108	GO:0007005: mitochondrion organization	2.48E-02
109	GO:0080092: regulation of pollen tube growth	2.48E-02
110	GO:0016226: iron-sulfur cluster assembly	2.48E-02
111	GO:0051726: regulation of cell cycle	3.10E-02
112	GO:0034220: ion transmembrane transport	3.13E-02
113	GO:0000413: protein peptidyl-prolyl isomerization	3.13E-02
114	GO:0015991: ATP hydrolysis coupled proton transport	3.13E-02
115	GO:0006662: glycerol ether metabolic process	3.30E-02
116	GO:0010197: polar nucleus fusion	3.30E-02
117	GO:0006342: chromatin silencing	3.30E-02
118	GO:0015986: ATP synthesis coupled proton transport	3.48E-02
119	GO:0061025: membrane fusion	3.48E-02
120	GO:0009791: post-embryonic development	3.66E-02
121	GO:0010183: pollen tube guidance	3.66E-02
122	GO:0080156: mitochondrial mRNA modification	3.83E-02
123	GO:0009630: gravitropism	4.02E-02
124	GO:0019761: glucosinolate biosynthetic process	4.02E-02
125	GO:0006457: protein folding	4.12E-02
126	GO:0010090: trichome morphogenesis	4.21E-02
127	GO:0009408: response to heat	4.26E-02
128	GO:0015031: protein transport	4.33E-02
129	GO:0006914: autophagy	4.40E-02
130	GO:0051607: defense response to virus	4.78E-02
131	GO:0000910: cytokinesis	4.78E-02
132	GO:0016126: sterol biosynthetic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0003735: structural constituent of ribosome	3.48E-46
2	GO:0003729: mRNA binding	9.21E-08
3	GO:0001055: RNA polymerase II activity	3.68E-05
4	GO:0004576: oligosaccharyl transferase activity	8.71E-05
5	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.36E-04
6	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.40E-04
7	GO:0030611: arsenate reductase activity	3.78E-04
8	GO:0035614: snRNA stem-loop binding	3.78E-04
9	GO:0030544: Hsp70 protein binding	3.78E-04
10	GO:0015288: porin activity	4.26E-04
11	GO:0035064: methylated histone binding	4.26E-04
12	GO:0008308: voltage-gated anion channel activity	5.22E-04
13	GO:0030619: U1 snRNA binding	8.22E-04
14	GO:0044390: ubiquitin-like protein conjugating enzyme binding	8.22E-04
15	GO:0047364: desulfoglucosinolate sulfotransferase activity	8.22E-04
16	GO:0004826: phenylalanine-tRNA ligase activity	8.22E-04
17	GO:1990585: hydroxyproline O-arabinosyltransferase activity	8.22E-04
18	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	8.22E-04
19	GO:0004106: chorismate mutase activity	8.22E-04
20	GO:0001054: RNA polymerase I activity	9.90E-04
21	GO:0004129: cytochrome-c oxidase activity	9.90E-04
22	GO:0008794: arsenate reductase (glutaredoxin) activity	9.90E-04
23	GO:0001056: RNA polymerase III activity	1.13E-03
24	GO:0004089: carbonate dehydratase activity	1.28E-03
25	GO:0008649: rRNA methyltransferase activity	1.33E-03
26	GO:0070180: large ribosomal subunit rRNA binding	1.33E-03
27	GO:0008430: selenium binding	1.33E-03
28	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.33E-03
29	GO:0005047: signal recognition particle binding	1.33E-03
30	GO:0004550: nucleoside diphosphate kinase activity	1.92E-03
31	GO:0008097: 5S rRNA binding	1.92E-03
32	GO:0000254: C-4 methylsterol oxidase activity	1.92E-03
33	GO:0004298: threonine-type endopeptidase activity	2.42E-03
34	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	2.58E-03
35	GO:0010011: auxin binding	2.58E-03
36	GO:0046923: ER retention sequence binding	2.58E-03
37	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.58E-03
38	GO:0000993: RNA polymerase II core binding	2.58E-03
39	GO:0031386: protein tag	3.30E-03
40	GO:0004372: glycine hydroxymethyltransferase activity	3.30E-03
41	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.65E-03
42	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.96E-03
43	GO:0031177: phosphopantetheine binding	4.08E-03
44	GO:0051117: ATPase binding	4.08E-03
45	GO:0004872: receptor activity	4.57E-03
46	GO:0051920: peroxiredoxin activity	4.92E-03
47	GO:0004747: ribokinase activity	4.92E-03
48	GO:0000035: acyl binding	4.92E-03
49	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.58E-03
50	GO:0008143: poly(A) binding	5.81E-03
51	GO:0008235: metalloexopeptidase activity	5.81E-03
52	GO:0042162: telomeric DNA binding	5.81E-03
53	GO:0004427: inorganic diphosphatase activity	5.81E-03
54	GO:0015035: protein disulfide oxidoreductase activity	5.95E-03
55	GO:0043022: ribosome binding	6.75E-03
56	GO:0016209: antioxidant activity	6.75E-03
57	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	6.75E-03
58	GO:0019843: rRNA binding	7.63E-03
59	GO:0008889: glycerophosphodiester phosphodiesterase activity	8.79E-03
60	GO:0047617: acyl-CoA hydrolase activity	9.89E-03
61	GO:0050897: cobalt ion binding	1.07E-02
62	GO:0008047: enzyme activator activity	1.10E-02
63	GO:0003746: translation elongation factor activity	1.18E-02
64	GO:0004177: aminopeptidase activity	1.22E-02
65	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.22E-02
66	GO:0000049: tRNA binding	1.34E-02
67	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.34E-02
68	GO:0003723: RNA binding	1.42E-02
69	GO:0031072: heat shock protein binding	1.47E-02
70	GO:0003725: double-stranded RNA binding	1.47E-02
71	GO:0043621: protein self-association	1.65E-02
72	GO:0008146: sulfotransferase activity	1.74E-02
73	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.78E-02
74	GO:0004725: protein tyrosine phosphatase activity	1.88E-02
75	GO:0051536: iron-sulfur cluster binding	2.02E-02
76	GO:0043130: ubiquitin binding	2.02E-02
77	GO:0043424: protein histidine kinase binding	2.17E-02
78	GO:0003727: single-stranded RNA binding	2.80E-02
79	GO:0003756: protein disulfide isomerase activity	2.80E-02
80	GO:0047134: protein-disulfide reductase activity	2.96E-02
81	GO:0005515: protein binding	3.05E-02
82	GO:0004791: thioredoxin-disulfide reductase activity	3.48E-02
83	GO:0009055: electron carrier activity	4.64E-02
84	GO:0015250: water channel activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
2	GO:0043186: P granule	0.00E+00
3	GO:0005675: holo TFIIH complex	0.00E+00
4	GO:0005840: ribosome	2.78E-39
5	GO:0022625: cytosolic large ribosomal subunit	7.45E-30
6	GO:0022626: cytosolic ribosome	1.46E-23
7	GO:0022627: cytosolic small ribosomal subunit	8.48E-14
8	GO:0005730: nucleolus	4.95E-10
9	GO:0005829: cytosol	1.93E-09
10	GO:0005774: vacuolar membrane	1.11E-07
11	GO:0005737: cytoplasm	1.73E-07
12	GO:0005750: mitochondrial respiratory chain complex III	3.92E-06
13	GO:0005753: mitochondrial proton-transporting ATP synthase complex	5.10E-06
14	GO:0000419: DNA-directed RNA polymerase V complex	6.53E-06
15	GO:0005747: mitochondrial respiratory chain complex I	1.31E-05
16	GO:0005732: small nucleolar ribonucleoprotein complex	2.55E-05
17	GO:0005773: vacuole	3.60E-05
18	GO:0005665: DNA-directed RNA polymerase II, core complex	7.50E-05
19	GO:0000502: proteasome complex	8.59E-05
20	GO:0008250: oligosaccharyltransferase complex	1.36E-04
21	GO:0045271: respiratory chain complex I	2.06E-04
22	GO:0015934: large ribosomal subunit	2.24E-04
23	GO:0009506: plasmodesma	3.73E-04
24	GO:0032044: DSIF complex	3.78E-04
25	GO:0005739: mitochondrion	4.36E-04
26	GO:0046930: pore complex	5.22E-04
27	GO:0005736: DNA-directed RNA polymerase I complex	6.25E-04
28	GO:0005685: U1 snRNP	6.25E-04
29	GO:0005666: DNA-directed RNA polymerase III complex	7.38E-04
30	GO:0071011: precatalytic spliceosome	7.38E-04
31	GO:0035145: exon-exon junction complex	8.22E-04
32	GO:0005697: telomerase holoenzyme complex	8.22E-04
33	GO:0000418: DNA-directed RNA polymerase IV complex	8.60E-04
34	GO:0071013: catalytic step 2 spliceosome	9.90E-04
35	GO:0019013: viral nucleocapsid	1.28E-03
36	GO:0034719: SMN-Sm protein complex	1.33E-03
37	GO:0005853: eukaryotic translation elongation factor 1 complex	1.33E-03
38	GO:0000439: core TFIIH complex	1.33E-03
39	GO:0016020: membrane	1.65E-03
40	GO:0009536: plastid	1.81E-03
41	GO:0005849: mRNA cleavage factor complex	1.92E-03
42	GO:0000323: lytic vacuole	1.92E-03
43	GO:0036513: Derlin-1 retrotranslocation complex	1.92E-03
44	GO:1990726: Lsm1-7-Pat1 complex	1.92E-03
45	GO:0005741: mitochondrial outer membrane	2.42E-03
46	GO:0005839: proteasome core complex	2.42E-03
47	GO:0016471: vacuolar proton-transporting V-type ATPase complex	2.58E-03
48	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	2.58E-03
49	GO:0005682: U5 snRNP	2.58E-03
50	GO:0005687: U4 snRNP	3.30E-03
51	GO:0097526: spliceosomal tri-snRNP complex	3.30E-03
52	GO:0005746: mitochondrial respiratory chain	3.30E-03
53	GO:0016591: DNA-directed RNA polymerase II, holoenzyme	3.30E-03
54	GO:0031966: mitochondrial membrane	3.34E-03
55	GO:0005681: spliceosomal complex	4.52E-03
56	GO:0005801: cis-Golgi network	4.92E-03
57	GO:0005689: U12-type spliceosomal complex	4.92E-03
58	GO:0071004: U2-type prespliceosome	6.75E-03
59	GO:0005688: U6 snRNP	6.75E-03
60	GO:0000421: autophagosome membrane	6.75E-03
61	GO:0019773: proteasome core complex, alpha-subunit complex	7.75E-03
62	GO:0046540: U4/U6 x U5 tri-snRNP complex	7.75E-03
63	GO:0005677: chromatin silencing complex	7.75E-03
64	GO:0005763: mitochondrial small ribosomal subunit	8.79E-03
65	GO:0005686: U2 snRNP	1.10E-02
66	GO:0005618: cell wall	1.20E-02
67	GO:0005852: eukaryotic translation initiation factor 3 complex	1.22E-02
68	GO:0008541: proteasome regulatory particle, lid subcomplex	1.22E-02
69	GO:0031307: integral component of mitochondrial outer membrane	1.34E-02
70	GO:0009508: plastid chromosome	1.47E-02
71	GO:0005758: mitochondrial intermembrane space	2.02E-02
72	GO:0070469: respiratory chain	2.17E-02
73	GO:0005783: endoplasmic reticulum	2.23E-02
74	GO:0015935: small ribosomal subunit	2.32E-02
75	GO:0031410: cytoplasmic vesicle	2.48E-02
76	GO:0016607: nuclear speck	2.51E-02
77	GO:0005654: nucleoplasm	3.57E-02
78	GO:0000785: chromatin	4.02E-02
79	GO:0005759: mitochondrial matrix	4.59E-02
80	GO:0009295: nucleoid	4.59E-02
81	GO:0000932: P-body	4.98E-02