Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G01130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0001881: receptor recycling0.00E+00
2GO:0006592: ornithine biosynthetic process0.00E+00
3GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
4GO:0007530: sex determination0.00E+00
5GO:0019428: allantoin biosynthetic process0.00E+00
6GO:0006721: terpenoid metabolic process0.00E+00
7GO:0009236: cobalamin biosynthetic process0.00E+00
8GO:0006412: translation3.60E-57
9GO:0042254: ribosome biogenesis7.89E-26
10GO:0009853: photorespiration2.19E-10
11GO:0006511: ubiquitin-dependent protein catabolic process6.80E-09
12GO:0000027: ribosomal large subunit assembly8.41E-08
13GO:0006120: mitochondrial electron transport, NADH to ubiquinone4.86E-07
14GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c4.67E-05
15GO:0000028: ribosomal small subunit assembly6.75E-05
16GO:1902626: assembly of large subunit precursor of preribosome7.23E-05
17GO:0008333: endosome to lysosome transport7.23E-05
18GO:0015992: proton transport8.62E-05
19GO:0051603: proteolysis involved in cellular protein catabolic process1.10E-04
20GO:0006241: CTP biosynthetic process1.50E-04
21GO:0006165: nucleoside diphosphate phosphorylation1.50E-04
22GO:0006228: UTP biosynthetic process1.50E-04
23GO:0006183: GTP biosynthetic process2.53E-04
24GO:0043248: proteasome assembly5.26E-04
25GO:0009735: response to cytokinin5.93E-04
26GO:0001560: regulation of cell growth by extracellular stimulus7.25E-04
27GO:2001006: regulation of cellulose biosynthetic process7.25E-04
28GO:0019354: siroheme biosynthetic process7.25E-04
29GO:0019628: urate catabolic process7.25E-04
30GO:0016487: farnesol metabolic process7.25E-04
31GO:0031468: nuclear envelope reassembly7.25E-04
32GO:0010265: SCF complex assembly7.25E-04
33GO:0006144: purine nucleobase metabolic process7.25E-04
34GO:0046686: response to cadmium ion1.01E-03
35GO:0045454: cell redox homeostasis1.15E-03
36GO:0022900: electron transport chain1.34E-03
37GO:0015991: ATP hydrolysis coupled proton transport1.43E-03
38GO:0008154: actin polymerization or depolymerization1.56E-03
39GO:0045901: positive regulation of translational elongation1.56E-03
40GO:0006452: translational frameshifting1.56E-03
41GO:0051788: response to misfolded protein1.56E-03
42GO:0006432: phenylalanyl-tRNA aminoacylation1.56E-03
43GO:0045905: positive regulation of translational termination1.56E-03
44GO:0071668: plant-type cell wall assembly1.56E-03
45GO:0034243: regulation of transcription elongation from RNA polymerase II promoter1.56E-03
46GO:0006662: glycerol ether metabolic process1.58E-03
47GO:0098656: anion transmembrane transport1.61E-03
48GO:0009245: lipid A biosynthetic process1.61E-03
49GO:0015986: ATP synthesis coupled proton transport1.73E-03
50GO:0000387: spliceosomal snRNP assembly1.91E-03
51GO:0009651: response to salt stress2.28E-03
52GO:0034227: tRNA thio-modification2.58E-03
53GO:0051211: anisotropic cell growth2.58E-03
54GO:0032786: positive regulation of DNA-templated transcription, elongation2.58E-03
55GO:0009150: purine ribonucleotide metabolic process2.58E-03
56GO:0002181: cytoplasmic translation2.58E-03
57GO:0046417: chorismate metabolic process2.58E-03
58GO:0015940: pantothenate biosynthetic process2.58E-03
59GO:0045793: positive regulation of cell size2.58E-03
60GO:0006760: folic acid-containing compound metabolic process2.58E-03
61GO:0006820: anion transport2.97E-03
62GO:0016925: protein sumoylation2.97E-03
63GO:0006626: protein targeting to mitochondrion3.38E-03
64GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.55E-03
65GO:0006166: purine ribonucleoside salvage3.76E-03
66GO:0070301: cellular response to hydrogen peroxide3.76E-03
67GO:0006107: oxaloacetate metabolic process3.76E-03
68GO:0009647: skotomorphogenesis3.76E-03
69GO:1901332: negative regulation of lateral root development3.76E-03
70GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.76E-03
71GO:0042989: sequestering of actin monomers3.76E-03
72GO:0006168: adenine salvage3.76E-03
73GO:0051289: protein homotetramerization3.76E-03
74GO:0032877: positive regulation of DNA endoreduplication3.76E-03
75GO:0046836: glycolipid transport3.76E-03
76GO:0007030: Golgi organization4.29E-03
77GO:0051781: positive regulation of cell division5.08E-03
78GO:0010363: regulation of plant-type hypersensitive response5.08E-03
79GO:0006621: protein retention in ER lumen5.08E-03
80GO:0006221: pyrimidine nucleotide biosynthetic process5.08E-03
81GO:0044205: 'de novo' UMP biosynthetic process5.08E-03
82GO:0032366: intracellular sterol transport5.08E-03
83GO:0006487: protein N-linked glycosylation5.32E-03
84GO:0000398: mRNA splicing, via spliceosome6.02E-03
85GO:0010431: seed maturation6.47E-03
86GO:0061077: chaperone-mediated protein folding6.47E-03
87GO:0044209: AMP salvage6.54E-03
88GO:0034599: cellular response to oxidative stress6.73E-03
89GO:0006777: Mo-molybdopterin cofactor biosynthetic process8.12E-03
90GO:0006555: methionine metabolic process8.12E-03
91GO:0045040: protein import into mitochondrial outer membrane8.12E-03
92GO:0042147: retrograde transport, endosome to Golgi9.16E-03
93GO:0009955: adaxial/abaxial pattern specification9.83E-03
94GO:0019509: L-methionine salvage from methylthioadenosine9.83E-03
95GO:1901001: negative regulation of response to salt stress9.83E-03
96GO:0009612: response to mechanical stimulus9.83E-03
97GO:0000911: cytokinesis by cell plate formation9.83E-03
98GO:0000413: protein peptidyl-prolyl isomerization9.92E-03
99GO:0032880: regulation of protein localization1.17E-02
100GO:0048528: post-embryonic root development1.17E-02
101GO:1900056: negative regulation of leaf senescence1.17E-02
102GO:0022904: respiratory electron transport chain1.17E-02
103GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.17E-02
104GO:0006979: response to oxidative stress1.20E-02
105GO:0009231: riboflavin biosynthetic process1.36E-02
106GO:0009690: cytokinin metabolic process1.36E-02
107GO:0006506: GPI anchor biosynthetic process1.36E-02
108GO:0031540: regulation of anthocyanin biosynthetic process1.36E-02
109GO:0006414: translational elongation1.51E-02
110GO:0009808: lignin metabolic process1.56E-02
111GO:0001510: RNA methylation1.56E-02
112GO:0006526: arginine biosynthetic process1.56E-02
113GO:0010204: defense response signaling pathway, resistance gene-independent1.56E-02
114GO:0006914: autophagy1.61E-02
115GO:0009793: embryo development ending in seed dormancy1.72E-02
116GO:0046685: response to arsenic-containing substance1.78E-02
117GO:0006754: ATP biosynthetic process1.78E-02
118GO:0048589: developmental growth1.78E-02
119GO:0009060: aerobic respiration1.78E-02
120GO:0006325: chromatin organization2.24E-02
121GO:0000103: sulfate assimilation2.24E-02
122GO:0043069: negative regulation of programmed cell death2.24E-02
123GO:0072593: reactive oxygen species metabolic process2.48E-02
124GO:0009073: aromatic amino acid family biosynthetic process2.48E-02
125GO:0015770: sucrose transport2.48E-02
126GO:0008361: regulation of cell size2.73E-02
127GO:0006790: sulfur compound metabolic process2.73E-02
128GO:0010043: response to zinc ion2.92E-02
129GO:0010628: positive regulation of gene expression3.00E-02
130GO:0010102: lateral root morphogenesis3.00E-02
131GO:0006108: malate metabolic process3.00E-02
132GO:0006807: nitrogen compound metabolic process3.00E-02
133GO:0010229: inflorescence development3.00E-02
134GO:0016192: vesicle-mediated transport3.19E-02
135GO:0048467: gynoecium development3.27E-02
136GO:0007034: vacuolar transport3.27E-02
137GO:0006446: regulation of translational initiation3.27E-02
138GO:0006099: tricarboxylic acid cycle3.34E-02
139GO:0010039: response to iron ion3.54E-02
140GO:0006413: translational initiation3.68E-02
141GO:0006071: glycerol metabolic process3.83E-02
142GO:0009926: auxin polar transport4.12E-02
143GO:0009116: nucleoside metabolic process4.12E-02
144GO:0030150: protein import into mitochondrial matrix4.12E-02
145GO:0007010: cytoskeleton organization4.12E-02
146GO:0006406: mRNA export from nucleus4.12E-02
147GO:0006289: nucleotide-excision repair4.12E-02
148GO:0051302: regulation of cell division4.42E-02
149GO:0043622: cortical microtubule organization4.42E-02
150GO:0009644: response to high light intensity4.45E-02
151GO:0015031: protein transport4.59E-02
152GO:0009965: leaf morphogenesis4.62E-02
153GO:0051260: protein homooligomerization4.73E-02
154GO:0009617: response to bacterium4.98E-02
RankGO TermAdjusted P value
1GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity0.00E+00
2GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
3GO:0050152: omega-amidase activity0.00E+00
4GO:0051266: sirohydrochlorin ferrochelatase activity0.00E+00
5GO:0004746: riboflavin synthase activity0.00E+00
6GO:0061799: cyclic pyranopterin monophosphate synthase activity0.00E+00
7GO:0047886: farnesol dehydrogenase activity0.00E+00
8GO:0004151: dihydroorotase activity0.00E+00
9GO:0005212: structural constituent of eye lens0.00E+00
10GO:0008777: acetylornithine deacetylase activity0.00E+00
11GO:0016852: sirohydrochlorin cobaltochelatase activity0.00E+00
12GO:0033971: hydroxyisourate hydrolase activity0.00E+00
13GO:0003735: structural constituent of ribosome4.04E-74
14GO:0004298: threonine-type endopeptidase activity3.27E-20
15GO:0003729: mRNA binding1.18E-14
16GO:0008233: peptidase activity6.82E-10
17GO:0008121: ubiquinol-cytochrome-c reductase activity1.02E-08
18GO:0004129: cytochrome-c oxidase activity3.45E-07
19GO:0050897: cobalt ion binding1.84E-05
20GO:0008137: NADH dehydrogenase (ubiquinone) activity2.97E-05
21GO:0019843: rRNA binding6.85E-05
22GO:0004550: nucleoside diphosphate kinase activity1.50E-04
23GO:0004576: oligosaccharyl transferase activity2.53E-04
24GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity3.78E-04
25GO:0031386: protein tag3.78E-04
26GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.53E-04
27GO:0031177: phosphopantetheine binding5.26E-04
28GO:0000035: acyl binding6.96E-04
29GO:0004602: glutathione peroxidase activity6.96E-04
30GO:0035614: snRNA stem-loop binding7.25E-04
31GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity7.25E-04
32GO:0005080: protein kinase C binding7.25E-04
33GO:0019786: Atg8-specific protease activity7.25E-04
34GO:0030611: arsenate reductase activity7.25E-04
35GO:0015288: porin activity1.10E-03
36GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.10E-03
37GO:0043022: ribosome binding1.10E-03
38GO:0015035: protein disulfide oxidoreductase activity1.16E-03
39GO:0003746: translation elongation factor activity1.20E-03
40GO:0047134: protein-disulfide reductase activity1.29E-03
41GO:0008308: voltage-gated anion channel activity1.34E-03
42GO:0004106: chorismate mutase activity1.56E-03
43GO:0004826: phenylalanine-tRNA ligase activity1.56E-03
44GO:0019779: Atg8 activating enzyme activity1.56E-03
45GO:0030619: U1 snRNA binding1.56E-03
46GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.58E-03
47GO:0004791: thioredoxin-disulfide reductase activity1.73E-03
48GO:0001055: RNA polymerase II activity1.91E-03
49GO:0047617: acyl-CoA hydrolase activity1.91E-03
50GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.45E-03
51GO:0052692: raffinose alpha-galactosidase activity2.58E-03
52GO:0070180: large ribosomal subunit rRNA binding2.58E-03
53GO:0008430: selenium binding2.58E-03
54GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity2.58E-03
55GO:0005047: signal recognition particle binding2.58E-03
56GO:0070181: small ribosomal subunit rRNA binding2.58E-03
57GO:0004557: alpha-galactosidase activity2.58E-03
58GO:0046961: proton-transporting ATPase activity, rotational mechanism2.59E-03
59GO:0008794: arsenate reductase (glutaredoxin) activity2.59E-03
60GO:0001054: RNA polymerase I activity2.59E-03
61GO:0001056: RNA polymerase III activity2.97E-03
62GO:0004089: carbonate dehydratase activity3.38E-03
63GO:0008097: 5S rRNA binding3.76E-03
64GO:0017089: glycolipid transporter activity3.76E-03
65GO:0003999: adenine phosphoribosyltransferase activity3.76E-03
66GO:0047627: adenylylsulfatase activity3.76E-03
67GO:0010011: auxin binding5.08E-03
68GO:0051861: glycolipid binding5.08E-03
69GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds5.08E-03
70GO:0046923: ER retention sequence binding5.08E-03
71GO:0070628: proteasome binding5.08E-03
72GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances5.08E-03
73GO:0019776: Atg8 ligase activity5.08E-03
74GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor5.08E-03
75GO:0000993: RNA polymerase II core binding5.08E-03
76GO:0051536: iron-sulfur cluster binding5.32E-03
77GO:0043130: ubiquitin binding5.32E-03
78GO:0005528: FK506 binding5.32E-03
79GO:0016651: oxidoreductase activity, acting on NAD(P)H6.54E-03
80GO:0003785: actin monomer binding6.54E-03
81GO:0031593: polyubiquitin binding8.12E-03
82GO:0051117: ATPase binding8.12E-03
83GO:0051537: 2 iron, 2 sulfur cluster binding9.75E-03
84GO:0051920: peroxiredoxin activity9.83E-03
85GO:0042162: telomeric DNA binding1.17E-02
86GO:0008143: poly(A) binding1.17E-02
87GO:0008320: protein transmembrane transporter activity1.17E-02
88GO:0004872: receptor activity1.24E-02
89GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.29E-02
90GO:0016209: antioxidant activity1.36E-02
91GO:0035064: methylated histone binding1.36E-02
92GO:0008173: RNA methyltransferase activity1.56E-02
93GO:0008889: glycerophosphodiester phosphodiesterase activity1.78E-02
94GO:0003723: RNA binding1.92E-02
95GO:0008515: sucrose transmembrane transporter activity2.48E-02
96GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.52E-02
97GO:0000049: tRNA binding2.73E-02
98GO:0015266: protein channel activity3.00E-02
99GO:0003697: single-stranded DNA binding3.20E-02
100GO:0004175: endopeptidase activity3.27E-02
101GO:0003993: acid phosphatase activity3.34E-02
102GO:0003712: transcription cofactor activity3.54E-02
103GO:0051119: sugar transmembrane transporter activity3.54E-02
104GO:0051539: 4 iron, 4 sulfur cluster binding3.64E-02
105GO:0004725: protein tyrosine phosphatase activity3.83E-02
106GO:0043621: protein self-association4.45E-02
107GO:0003743: translation initiation factor activity4.85E-02
RankGO TermAdjusted P value
1GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0005840: ribosome3.98E-56
4GO:0022625: cytosolic large ribosomal subunit3.32E-52
5GO:0022626: cytosolic ribosome2.53E-49
6GO:0022627: cytosolic small ribosomal subunit7.44E-27
7GO:0005829: cytosol2.17E-22
8GO:0005839: proteasome core complex3.27E-20
9GO:0000502: proteasome complex4.94E-19
10GO:0005730: nucleolus1.05E-18
11GO:0005747: mitochondrial respiratory chain complex I3.07E-18
12GO:0005737: cytoplasm1.22E-15
13GO:0045271: respiratory chain complex I1.41E-14
14GO:0005774: vacuolar membrane1.93E-14
15GO:0005750: mitochondrial respiratory chain complex III7.14E-12
16GO:0019773: proteasome core complex, alpha-subunit complex4.61E-10
17GO:0005753: mitochondrial proton-transporting ATP synthase complex7.92E-10
18GO:0031966: mitochondrial membrane2.71E-09
19GO:0005773: vacuole3.01E-09
20GO:0016020: membrane4.95E-08
21GO:0015934: large ribosomal subunit7.18E-08
22GO:0009506: plasmodesma2.26E-06
23GO:0005739: mitochondrion1.13E-05
24GO:0005758: mitochondrial intermembrane space5.91E-05
25GO:0005783: endoplasmic reticulum1.82E-04
26GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)2.53E-04
27GO:0005732: small nucleolar ribonucleoprotein complex2.82E-04
28GO:0009507: chloroplast3.01E-04
29GO:0005665: DNA-directed RNA polymerase II, core complex3.03E-04
30GO:0008250: oligosaccharyltransferase complex3.78E-04
31GO:0005618: cell wall3.80E-04
32GO:0005771: multivesicular body5.26E-04
33GO:0030904: retromer complex5.26E-04
34GO:0000419: DNA-directed RNA polymerase V complex5.72E-04
35GO:0031234: extrinsic component of cytoplasmic side of plasma membrane7.25E-04
36GO:0032044: DSIF complex7.25E-04
37GO:0019774: proteasome core complex, beta-subunit complex7.25E-04
38GO:0045273: respiratory chain complex II1.10E-03
39GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.10E-03
40GO:0000421: autophagosome membrane1.10E-03
41GO:0009536: plastid1.23E-03
42GO:0046930: pore complex1.34E-03
43GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain1.56E-03
44GO:0035145: exon-exon junction complex1.56E-03
45GO:0005697: telomerase holoenzyme complex1.56E-03
46GO:0005736: DNA-directed RNA polymerase I complex1.61E-03
47GO:0005685: U1 snRNP1.61E-03
48GO:0005666: DNA-directed RNA polymerase III complex1.91E-03
49GO:0071011: precatalytic spliceosome1.91E-03
50GO:0005740: mitochondrial envelope2.24E-03
51GO:0005751: mitochondrial respiratory chain complex IV2.58E-03
52GO:0034719: SMN-Sm protein complex2.58E-03
53GO:0005853: eukaryotic translation elongation factor 1 complex2.58E-03
54GO:0071013: catalytic step 2 spliceosome2.59E-03
55GO:0008541: proteasome regulatory particle, lid subcomplex2.59E-03
56GO:0019013: viral nucleocapsid3.38E-03
57GO:0005788: endoplasmic reticulum lumen3.58E-03
58GO:0005775: vacuolar lumen3.76E-03
59GO:0033180: proton-transporting V-type ATPase, V1 domain3.76E-03
60GO:1990726: Lsm1-7-Pat1 complex3.76E-03
61GO:0005682: U5 snRNP5.08E-03
62GO:0005776: autophagosome5.08E-03
63GO:0016471: vacuolar proton-transporting V-type ATPase complex5.08E-03
64GO:0070469: respiratory chain5.88E-03
65GO:0015935: small ribosomal subunit6.47E-03
66GO:0005741: mitochondrial outer membrane6.47E-03
67GO:0097526: spliceosomal tri-snRNP complex6.54E-03
68GO:0005746: mitochondrial respiratory chain6.54E-03
69GO:0005687: U4 snRNP6.54E-03
70GO:0031410: cytoplasmic vesicle7.10E-03
71GO:0032588: trans-Golgi network membrane8.12E-03
72GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)8.12E-03
73GO:0005777: peroxisome8.65E-03
74GO:0005759: mitochondrial matrix9.66E-03
75GO:0010005: cortical microtubule, transverse to long axis9.83E-03
76GO:0005689: U12-type spliceosomal complex9.83E-03
77GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane1.17E-02
78GO:0005688: U6 snRNP1.36E-02
79GO:0071004: U2-type prespliceosome1.36E-02
80GO:0046540: U4/U6 x U5 tri-snRNP complex1.56E-02
81GO:0005742: mitochondrial outer membrane translocase complex1.56E-02
82GO:0005681: spliceosomal complex1.60E-02
83GO:0005763: mitochondrial small ribosomal subunit1.78E-02
84GO:0031090: organelle membrane1.78E-02
85GO:0005876: spindle microtubule2.00E-02
86GO:0000418: DNA-directed RNA polymerase IV complex2.24E-02
87GO:0055028: cortical microtubule2.24E-02
88GO:0005686: U2 snRNP2.24E-02
89GO:0005852: eukaryotic translation initiation factor 3 complex2.48E-02
90GO:0031307: integral component of mitochondrial outer membrane2.73E-02
91GO:0000325: plant-type vacuole2.92E-02
92GO:0009508: plastid chromosome3.00E-02
93GO:0009574: preprophase band3.00E-02
94GO:0005938: cell cortex3.00E-02
95GO:0005789: endoplasmic reticulum membrane3.05E-02
96GO:0031902: late endosome membrane3.80E-02
<
Gene type



Gene DE type