co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046677: response to antibiotic	0.00E+00
2	GO:0015882: L-ascorbic acid transport	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
5	GO:0015979: photosynthesis	9.35E-10
6	GO:0010114: response to red light	1.37E-09
7	GO:0010218: response to far red light	2.77E-08
8	GO:0009768: photosynthesis, light harvesting in photosystem I	4.52E-08
9	GO:0009644: response to high light intensity	1.03E-07
10	GO:0009769: photosynthesis, light harvesting in photosystem II	1.23E-07
11	GO:0009645: response to low light intensity stimulus	1.23E-07
12	GO:0009416: response to light stimulus	5.44E-07
13	GO:0018298: protein-chromophore linkage	1.29E-06
14	GO:0009637: response to blue light	2.19E-06
15	GO:0009269: response to desiccation	5.25E-06
16	GO:0010189: vitamin E biosynthetic process	1.63E-05
17	GO:0009642: response to light intensity	2.95E-05
18	GO:0055114: oxidation-reduction process	3.79E-05
19	GO:0015995: chlorophyll biosynthetic process	4.20E-05
20	GO:0090333: regulation of stomatal closure	4.72E-05
21	GO:0051775: response to redox state	6.58E-05
22	GO:0071277: cellular response to calcium ion	6.58E-05
23	GO:0010028: xanthophyll cycle	6.58E-05
24	GO:0006094: gluconeogenesis	1.11E-04
25	GO:0010207: photosystem II assembly	1.27E-04
26	GO:0090351: seedling development	1.44E-04
27	GO:0042548: regulation of photosynthesis, light reaction	1.59E-04
28	GO:0010042: response to manganese ion	1.59E-04
29	GO:0050992: dimethylallyl diphosphate biosynthetic process	1.59E-04
30	GO:0016122: xanthophyll metabolic process	1.59E-04
31	GO:0006729: tetrahydrobiopterin biosynthetic process	1.59E-04
32	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.59E-04
33	GO:0042853: L-alanine catabolic process	1.59E-04
34	GO:0009915: phloem sucrose loading	1.59E-04
35	GO:1902448: positive regulation of shade avoidance	2.69E-04
36	GO:0006000: fructose metabolic process	2.69E-04
37	GO:0042989: sequestering of actin monomers	3.90E-04
38	GO:0042823: pyridoxal phosphate biosynthetic process	3.90E-04
39	GO:2001141: regulation of RNA biosynthetic process	3.90E-04
40	GO:0006107: oxaloacetate metabolic process	3.90E-04
41	GO:0019252: starch biosynthetic process	4.26E-04
42	GO:0030104: water homeostasis	5.20E-04
43	GO:0006021: inositol biosynthetic process	5.20E-04
44	GO:0071483: cellular response to blue light	5.20E-04
45	GO:0006734: NADH metabolic process	5.20E-04
46	GO:0009765: photosynthesis, light harvesting	5.20E-04
47	GO:0015994: chlorophyll metabolic process	5.20E-04
48	GO:0030041: actin filament polymerization	6.60E-04
49	GO:0016123: xanthophyll biosynthetic process	6.60E-04
50	GO:0009409: response to cold	6.74E-04
51	GO:0009643: photosynthetic acclimation	8.06E-04
52	GO:0050665: hydrogen peroxide biosynthetic process	8.06E-04
53	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	8.06E-04
54	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.06E-04
55	GO:0009658: chloroplast organization	9.04E-04
56	GO:0009854: oxidative photosynthetic carbon pathway	9.59E-04
57	GO:0009648: photoperiodism	9.59E-04
58	GO:0071470: cellular response to osmotic stress	9.59E-04
59	GO:0034599: cellular response to oxidative stress	1.10E-03
60	GO:0030026: cellular manganese ion homeostasis	1.12E-03
61	GO:0051510: regulation of unidimensional cell growth	1.12E-03
62	GO:0009704: de-etiolation	1.29E-03
63	GO:0042542: response to hydrogen peroxide	1.29E-03
64	GO:0010262: somatic embryogenesis	1.47E-03
65	GO:0006002: fructose 6-phosphate metabolic process	1.47E-03
66	GO:0071482: cellular response to light stimulus	1.47E-03
67	GO:0010206: photosystem II repair	1.65E-03
68	GO:0098656: anion transmembrane transport	1.65E-03
69	GO:0009245: lipid A biosynthetic process	1.65E-03
70	GO:0006098: pentose-phosphate shunt	1.65E-03
71	GO:0006995: cellular response to nitrogen starvation	2.05E-03
72	GO:0009688: abscisic acid biosynthetic process	2.05E-03
73	GO:0009641: shade avoidance	2.05E-03
74	GO:0009970: cellular response to sulfate starvation	2.05E-03
75	GO:0043085: positive regulation of catalytic activity	2.26E-03
76	GO:0006352: DNA-templated transcription, initiation	2.26E-03
77	GO:0009773: photosynthetic electron transport in photosystem I	2.26E-03
78	GO:0006108: malate metabolic process	2.70E-03
79	GO:0055046: microgametogenesis	2.70E-03
80	GO:0005986: sucrose biosynthetic process	2.70E-03
81	GO:0019253: reductive pentose-phosphate cycle	2.93E-03
82	GO:0010223: secondary shoot formation	2.93E-03
83	GO:0009266: response to temperature stimulus	2.93E-03
84	GO:0046688: response to copper ion	3.16E-03
85	GO:0009845: seed germination	3.41E-03
86	GO:0009735: response to cytokinin	3.53E-03
87	GO:0007010: cytoskeleton organization	3.65E-03
88	GO:0016036: cellular response to phosphate starvation	4.05E-03
89	GO:0007623: circadian rhythm	4.34E-03
90	GO:0019748: secondary metabolic process	4.43E-03
91	GO:0071215: cellular response to abscisic acid stimulus	4.70E-03
92	GO:0042335: cuticle development	5.55E-03
93	GO:0006606: protein import into nucleus	5.55E-03
94	GO:0006662: glycerol ether metabolic process	5.85E-03
95	GO:0010182: sugar mediated signaling pathway	5.85E-03
96	GO:0008654: phospholipid biosynthetic process	6.45E-03
97	GO:0009791: post-embryonic development	6.45E-03
98	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	6.76E-03
99	GO:0080167: response to karrikin	8.30E-03
100	GO:0051607: defense response to virus	8.40E-03
101	GO:0009627: systemic acquired resistance	9.44E-03
102	GO:0042742: defense response to bacterium	9.67E-03
103	GO:0006979: response to oxidative stress	9.76E-03
104	GO:0048573: photoperiodism, flowering	9.79E-03
105	GO:0045454: cell redox homeostasis	9.94E-03
106	GO:0016311: dephosphorylation	1.02E-02
107	GO:0008219: cell death	1.05E-02
108	GO:0006811: ion transport	1.13E-02
109	GO:0048527: lateral root development	1.17E-02
110	GO:0009408: response to heat	1.23E-02
111	GO:0016051: carbohydrate biosynthetic process	1.24E-02
112	GO:0009853: photorespiration	1.24E-02
113	GO:0006099: tricarboxylic acid cycle	1.28E-02
114	GO:0006631: fatty acid metabolic process	1.40E-02
115	GO:0009640: photomorphogenesis	1.49E-02
116	GO:0006810: transport	1.57E-02
117	GO:0005975: carbohydrate metabolic process	1.64E-02
118	GO:0031347: regulation of defense response	1.70E-02
119	GO:0006812: cation transport	1.75E-02
120	GO:0006364: rRNA processing	1.84E-02
121	GO:0009585: red, far-red light phototransduction	1.84E-02
122	GO:0006096: glycolytic process	2.07E-02
123	GO:0048316: seed development	2.12E-02
124	GO:0009624: response to nematode	2.36E-02
125	GO:0045893: positive regulation of transcription, DNA-templated	2.51E-02
126	GO:0009793: embryo development ending in seed dormancy	2.79E-02
127	GO:0009058: biosynthetic process	2.88E-02
128	GO:0042744: hydrogen peroxide catabolic process	3.04E-02
129	GO:0009790: embryo development	3.09E-02
130	GO:0006633: fatty acid biosynthetic process	3.26E-02
131	GO:0006413: translational initiation	3.32E-02
132	GO:0010228: vegetative to reproductive phase transition of meristem	3.60E-02
133	GO:0042254: ribosome biogenesis	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0009976: tocopherol cyclase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
4	GO:0045550: geranylgeranyl reductase activity	0.00E+00
5	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
6	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
7	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
8	GO:0010486: manganese:proton antiporter activity	0.00E+00
9	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
10	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
11	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
12	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
13	GO:0031409: pigment binding	2.76E-08
14	GO:0016168: chlorophyll binding	8.02E-07
15	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	6.58E-05
16	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	6.58E-05
17	GO:0008746: NAD(P)+ transhydrogenase activity	6.58E-05
18	GO:0035671: enone reductase activity	6.58E-05
19	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	6.58E-05
20	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	6.58E-05
21	GO:0004512: inositol-3-phosphate synthase activity	1.59E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.59E-04
23	GO:0004096: catalase activity	2.69E-04
24	GO:0004373: glycogen (starch) synthase activity	2.69E-04
25	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	3.90E-04
26	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	3.90E-04
27	GO:0016851: magnesium chelatase activity	3.90E-04
28	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	3.90E-04
29	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	3.90E-04
30	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	3.90E-04
31	GO:0016853: isomerase activity	3.97E-04
32	GO:0009011: starch synthase activity	5.20E-04
33	GO:0008891: glycolate oxidase activity	5.20E-04
34	GO:0001053: plastid sigma factor activity	5.20E-04
35	GO:0008453: alanine-glyoxylate transaminase activity	5.20E-04
36	GO:0016987: sigma factor activity	5.20E-04
37	GO:0003785: actin monomer binding	6.60E-04
38	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	6.60E-04
39	GO:0051538: 3 iron, 4 sulfur cluster binding	6.60E-04
40	GO:0000293: ferric-chelate reductase activity	8.06E-04
41	GO:0042578: phosphoric ester hydrolase activity	8.06E-04
42	GO:0031177: phosphopantetheine binding	8.06E-04
43	GO:0016615: malate dehydrogenase activity	8.06E-04
44	GO:0004332: fructose-bisphosphate aldolase activity	8.06E-04
45	GO:0030060: L-malate dehydrogenase activity	9.59E-04
46	GO:0000035: acyl binding	9.59E-04
47	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.29E-03
48	GO:0008135: translation factor activity, RNA binding	1.47E-03
49	GO:0071949: FAD binding	1.65E-03
50	GO:0005384: manganese ion transmembrane transporter activity	1.85E-03
51	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.85E-03
52	GO:0008047: enzyme activator activity	2.05E-03
53	GO:0046872: metal ion binding	2.18E-03
54	GO:0005315: inorganic phosphate transmembrane transporter activity	2.70E-03
55	GO:0004565: beta-galactosidase activity	2.70E-03
56	GO:0016491: oxidoreductase activity	3.02E-03
57	GO:0003712: transcription cofactor activity	3.16E-03
58	GO:0003954: NADH dehydrogenase activity	3.65E-03
59	GO:0008324: cation transmembrane transporter activity	3.90E-03
60	GO:0008514: organic anion transmembrane transporter activity	4.98E-03
61	GO:0047134: protein-disulfide reductase activity	5.26E-03
62	GO:0010181: FMN binding	6.15E-03
63	GO:0004791: thioredoxin-disulfide reductase activity	6.15E-03
64	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.40E-03
65	GO:0050897: cobalt ion binding	1.17E-02
66	GO:0003746: translation elongation factor activity	1.24E-02
67	GO:0003993: acid phosphatase activity	1.28E-02
68	GO:0004185: serine-type carboxypeptidase activity	1.49E-02
69	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.84E-02
70	GO:0016887: ATPase activity	1.91E-02
71	GO:0005515: protein binding	1.99E-02
72	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.12E-02
73	GO:0003779: actin binding	2.31E-02
74	GO:0015035: protein disulfide oxidoreductase activity	2.41E-02
75	GO:0030170: pyridoxal phosphate binding	2.99E-02
76	GO:0008565: protein transporter activity	3.15E-02
77	GO:0042802: identical protein binding	4.13E-02
78	GO:0005215: transporter activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.52E-22
2	GO:0009941: chloroplast envelope	2.87E-18
3	GO:0009535: chloroplast thylakoid membrane	1.61E-15
4	GO:0009579: thylakoid	3.52E-15
5	GO:0009534: chloroplast thylakoid	3.75E-15
6	GO:0010287: plastoglobule	7.47E-12
7	GO:0009570: chloroplast stroma	6.74E-11
8	GO:0009517: PSII associated light-harvesting complex II	9.18E-09
9	GO:0009522: photosystem I	2.18E-07
10	GO:0009523: photosystem II	2.57E-07
11	GO:0009706: chloroplast inner membrane	4.90E-07
12	GO:0030076: light-harvesting complex	2.52E-06
13	GO:0031977: thylakoid lumen	9.18E-05
14	GO:0031304: intrinsic component of mitochondrial inner membrane	1.59E-04
15	GO:0009569: chloroplast starch grain	1.59E-04
16	GO:0048046: apoplast	2.34E-04
17	GO:0010007: magnesium chelatase complex	2.69E-04
18	GO:0010319: stromule	5.82E-04
19	GO:0005777: peroxisome	8.49E-04
20	GO:0009514: glyoxysome	1.47E-03
21	GO:0005938: cell cortex	2.70E-03
22	GO:0016602: CCAAT-binding factor complex	2.70E-03
23	GO:0009543: chloroplast thylakoid lumen	3.15E-03
24	GO:0022626: cytosolic ribosome	3.73E-03
25	GO:0042651: thylakoid membrane	3.90E-03
26	GO:0009654: photosystem II oxygen evolving complex	3.90E-03
27	GO:0015629: actin cytoskeleton	4.70E-03
28	GO:0005770: late endosome	5.85E-03
29	GO:0019898: extrinsic component of membrane	6.45E-03
30	GO:0031969: chloroplast membrane	8.30E-03
31	GO:0031902: late endosome membrane	1.40E-02
32	GO:0005773: vacuole	2.47E-02
33	GO:0005623: cell	2.82E-02