GO Enrichment Analysis of Co-expressed Genes with
AT2G47990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0039694: viral RNA genome replication | 0.00E+00 |
| 2 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 3 | GO:0070476: rRNA (guanine-N7)-methylation | 0.00E+00 |
| 4 | GO:0006364: rRNA processing | 9.96E-12 |
| 5 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 9.07E-06 |
| 6 | GO:0000028: ribosomal small subunit assembly | 1.67E-05 |
| 7 | GO:0009451: RNA modification | 1.87E-05 |
| 8 | GO:0000469: cleavage involved in rRNA processing | 4.60E-05 |
| 9 | GO:0030490: maturation of SSU-rRNA | 4.60E-05 |
| 10 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 4.60E-05 |
| 11 | GO:1902182: shoot apical meristem development | 4.60E-05 |
| 12 | GO:2000232: regulation of rRNA processing | 4.60E-05 |
| 13 | GO:0043985: histone H4-R3 methylation | 4.60E-05 |
| 14 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.13E-04 |
| 15 | GO:0009553: embryo sac development | 1.30E-04 |
| 16 | GO:0042780: tRNA 3'-end processing | 1.95E-04 |
| 17 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 1.95E-04 |
| 18 | GO:0045604: regulation of epidermal cell differentiation | 1.95E-04 |
| 19 | GO:0010501: RNA secondary structure unwinding | 2.14E-04 |
| 20 | GO:0006479: protein methylation | 3.84E-04 |
| 21 | GO:0046345: abscisic acid catabolic process | 3.84E-04 |
| 22 | GO:0042254: ribosome biogenesis | 5.17E-04 |
| 23 | GO:0001731: formation of translation preinitiation complex | 5.98E-04 |
| 24 | GO:0000741: karyogamy | 5.98E-04 |
| 25 | GO:0030488: tRNA methylation | 7.13E-04 |
| 26 | GO:0048444: floral organ morphogenesis | 7.13E-04 |
| 27 | GO:0010077: maintenance of inflorescence meristem identity | 7.13E-04 |
| 28 | GO:0045995: regulation of embryonic development | 8.33E-04 |
| 29 | GO:0001522: pseudouridine synthesis | 9.57E-04 |
| 30 | GO:0019827: stem cell population maintenance | 9.57E-04 |
| 31 | GO:2000024: regulation of leaf development | 1.22E-03 |
| 32 | GO:0001708: cell fate specification | 1.22E-03 |
| 33 | GO:0006417: regulation of translation | 1.26E-03 |
| 34 | GO:0006349: regulation of gene expression by genetic imprinting | 1.36E-03 |
| 35 | GO:0006446: regulation of translational initiation | 2.14E-03 |
| 36 | GO:0010030: positive regulation of seed germination | 2.31E-03 |
| 37 | GO:0009790: embryo development | 2.32E-03 |
| 38 | GO:0010197: polar nucleus fusion | 4.25E-03 |
| 39 | GO:0006342: chromatin silencing | 4.25E-03 |
| 40 | GO:0009960: endosperm development | 4.25E-03 |
| 41 | GO:0010305: leaf vascular tissue pattern formation | 4.25E-03 |
| 42 | GO:0048825: cotyledon development | 4.68E-03 |
| 43 | GO:0009926: auxin polar transport | 1.07E-02 |
| 44 | GO:0009555: pollen development | 1.37E-02 |
| 45 | GO:0009909: regulation of flower development | 1.42E-02 |
| 46 | GO:0051301: cell division | 1.49E-02 |
| 47 | GO:0006396: RNA processing | 1.73E-02 |
| 48 | GO:0006413: translational initiation | 2.38E-02 |
| 49 | GO:0007166: cell surface receptor signaling pathway | 2.75E-02 |
| 50 | GO:0048366: leaf development | 3.84E-02 |
| 51 | GO:0045892: negative regulation of transcription, DNA-templated | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 2 | GO:0016435: rRNA (guanine) methyltransferase activity | 0.00E+00 |
| 3 | GO:0000166: nucleotide binding | 3.60E-12 |
| 4 | GO:0003723: RNA binding | 1.93E-07 |
| 5 | GO:0001054: RNA polymerase I activity | 4.81E-05 |
| 6 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.09E-05 |
| 7 | GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters | 1.13E-04 |
| 8 | GO:0008026: ATP-dependent helicase activity | 1.47E-04 |
| 9 | GO:0004519: endonuclease activity | 1.48E-04 |
| 10 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 1.95E-04 |
| 11 | GO:0070181: small ribosomal subunit rRNA binding | 1.95E-04 |
| 12 | GO:0048027: mRNA 5'-UTR binding | 2.85E-04 |
| 13 | GO:0004004: ATP-dependent RNA helicase activity | 4.87E-04 |
| 14 | GO:0030515: snoRNA binding | 8.33E-04 |
| 15 | GO:0004521: endoribonuclease activity | 1.81E-03 |
| 16 | GO:0001056: RNA polymerase III activity | 1.81E-03 |
| 17 | GO:0043130: ubiquitin binding | 2.67E-03 |
| 18 | GO:0018024: histone-lysine N-methyltransferase activity | 3.83E-03 |
| 19 | GO:0008168: methyltransferase activity | 4.05E-03 |
| 20 | GO:0003713: transcription coactivator activity | 4.25E-03 |
| 21 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 9.25E-03 |
| 22 | GO:0042393: histone binding | 9.82E-03 |
| 23 | GO:0004386: helicase activity | 1.80E-02 |
| 24 | GO:0003743: translation initiation factor activity | 2.80E-02 |
| 25 | GO:0003824: catalytic activity | 3.04E-02 |
| 26 | GO:0003676: nucleic acid binding | 3.18E-02 |
| 27 | GO:0003729: mRNA binding | 4.12E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034455: t-UTP complex | 0.00E+00 |
| 2 | GO:0030688: preribosome, small subunit precursor | 0.00E+00 |
| 3 | GO:0019034: viral replication complex | 0.00E+00 |
| 4 | GO:0005730: nucleolus | 3.35E-18 |
| 5 | GO:0005634: nucleus | 7.99E-09 |
| 6 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.42E-06 |
| 7 | GO:0005736: DNA-directed RNA polymerase I complex | 2.71E-05 |
| 8 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 4.60E-05 |
| 9 | GO:0070545: PeBoW complex | 1.13E-04 |
| 10 | GO:0005844: polysome | 3.84E-04 |
| 11 | GO:0016282: eukaryotic 43S preinitiation complex | 5.98E-04 |
| 12 | GO:0033290: eukaryotic 48S preinitiation complex | 7.13E-04 |
| 13 | GO:0005763: mitochondrial small ribosomal subunit | 1.22E-03 |
| 14 | GO:0005666: DNA-directed RNA polymerase III complex | 1.36E-03 |
| 15 | GO:0005834: heterotrimeric G-protein complex | 1.42E-03 |
| 16 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.66E-03 |
| 17 | GO:0032040: small-subunit processome | 1.81E-03 |
| 18 | GO:0043234: protein complex | 2.49E-03 |
| 19 | GO:0005694: chromosome | 5.13E-03 |
| 20 | GO:0019005: SCF ubiquitin ligase complex | 7.60E-03 |
| 21 | GO:0005654: nucleoplasm | 1.95E-02 |
| 22 | GO:0005759: mitochondrial matrix | 2.34E-02 |
| 23 | GO:0022627: cytosolic small ribosomal subunit | 3.06E-02 |
| 24 | GO:0005743: mitochondrial inner membrane | 4.98E-02 |