Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G47940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:0000023: maltose metabolic process0.00E+00
3GO:1905421: regulation of plant organ morphogenesis0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0016553: base conversion or substitution editing0.00E+00
11GO:0090627: plant epidermal cell differentiation0.00E+00
12GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0032544: plastid translation1.83E-11
15GO:0009735: response to cytokinin2.81E-11
16GO:0015979: photosynthesis4.37E-11
17GO:0006412: translation2.28E-09
18GO:0010027: thylakoid membrane organization8.29E-09
19GO:0042254: ribosome biogenesis2.62E-08
20GO:0015995: chlorophyll biosynthetic process4.55E-07
21GO:0019464: glycine decarboxylation via glycine cleavage system7.77E-07
22GO:0009773: photosynthetic electron transport in photosystem I1.54E-06
23GO:0019252: starch biosynthetic process2.10E-06
24GO:0030388: fructose 1,6-bisphosphate metabolic process6.33E-06
25GO:0010196: nonphotochemical quenching9.21E-06
26GO:0006000: fructose metabolic process2.21E-05
27GO:0009409: response to cold6.10E-05
28GO:0005983: starch catabolic process7.38E-05
29GO:0010021: amylopectin biosynthetic process8.61E-05
30GO:0032543: mitochondrial translation1.34E-04
31GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.92E-04
32GO:0010190: cytochrome b6f complex assembly1.92E-04
33GO:0006418: tRNA aminoacylation for protein translation2.04E-04
34GO:0080093: regulation of photorespiration3.75E-04
35GO:0031998: regulation of fatty acid beta-oxidation3.75E-04
36GO:0010028: xanthophyll cycle3.75E-04
37GO:0071588: hydrogen peroxide mediated signaling pathway3.75E-04
38GO:0000025: maltose catabolic process3.75E-04
39GO:0005980: glycogen catabolic process3.75E-04
40GO:0006438: valyl-tRNA aminoacylation3.75E-04
41GO:0043489: RNA stabilization3.75E-04
42GO:0005978: glycogen biosynthetic process4.22E-04
43GO:0006002: fructose 6-phosphate metabolic process5.17E-04
44GO:0045454: cell redox homeostasis5.29E-04
45GO:0010206: photosystem II repair6.19E-04
46GO:0005982: starch metabolic process7.31E-04
47GO:0010205: photoinhibition7.31E-04
48GO:0031648: protein destabilization8.15E-04
49GO:0016122: xanthophyll metabolic process8.15E-04
50GO:0010270: photosystem II oxygen evolving complex assembly8.15E-04
51GO:0009629: response to gravity8.15E-04
52GO:0005976: polysaccharide metabolic process8.15E-04
53GO:0007154: cell communication8.15E-04
54GO:0090342: regulation of cell aging8.15E-04
55GO:0006782: protoporphyrinogen IX biosynthetic process8.52E-04
56GO:0009658: chloroplast organization1.08E-03
57GO:0042742: defense response to bacterium1.08E-03
58GO:0006094: gluconeogenesis1.27E-03
59GO:0005986: sucrose biosynthetic process1.27E-03
60GO:0016050: vesicle organization1.32E-03
61GO:2001295: malonyl-CoA biosynthetic process1.32E-03
62GO:0048281: inflorescence morphogenesis1.32E-03
63GO:0009817: defense response to fungus, incompatible interaction1.32E-03
64GO:0006518: peptide metabolic process1.32E-03
65GO:0010623: programmed cell death involved in cell development1.32E-03
66GO:0090153: regulation of sphingolipid biosynthetic process1.32E-03
67GO:0010020: chloroplast fission1.43E-03
68GO:0055114: oxidation-reduction process1.49E-03
69GO:0034599: cellular response to oxidative stress1.89E-03
70GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.91E-03
71GO:0006241: CTP biosynthetic process1.91E-03
72GO:0010731: protein glutathionylation1.91E-03
73GO:0006424: glutamyl-tRNA aminoacylation1.91E-03
74GO:0006165: nucleoside diphosphate phosphorylation1.91E-03
75GO:0006228: UTP biosynthetic process1.91E-03
76GO:0010148: transpiration1.91E-03
77GO:0006289: nucleotide-excision repair1.97E-03
78GO:0006633: fatty acid biosynthetic process2.10E-03
79GO:0006631: fatty acid metabolic process2.22E-03
80GO:0006808: regulation of nitrogen utilization2.56E-03
81GO:0015976: carbon utilization2.56E-03
82GO:0051322: anaphase2.56E-03
83GO:0006109: regulation of carbohydrate metabolic process2.56E-03
84GO:0006183: GTP biosynthetic process2.56E-03
85GO:0045727: positive regulation of translation2.56E-03
86GO:0015994: chlorophyll metabolic process2.56E-03
87GO:2000122: negative regulation of stomatal complex development2.56E-03
88GO:0015846: polyamine transport2.56E-03
89GO:0010600: regulation of auxin biosynthetic process2.56E-03
90GO:0006546: glycine catabolic process2.56E-03
91GO:0010508: positive regulation of autophagy2.56E-03
92GO:0051205: protein insertion into membrane2.56E-03
93GO:0010037: response to carbon dioxide2.56E-03
94GO:0006284: base-excision repair3.11E-03
95GO:0006097: glyoxylate cycle3.28E-03
96GO:0006461: protein complex assembly3.28E-03
97GO:0000304: response to singlet oxygen3.28E-03
98GO:0016120: carotene biosynthetic process3.28E-03
99GO:0006544: glycine metabolic process3.28E-03
100GO:0045038: protein import into chloroplast thylakoid membrane3.28E-03
101GO:0000413: protein peptidyl-prolyl isomerization3.64E-03
102GO:0008152: metabolic process3.72E-03
103GO:0010304: PSII associated light-harvesting complex II catabolic process4.05E-03
104GO:0042549: photosystem II stabilization4.05E-03
105GO:0000470: maturation of LSU-rRNA4.05E-03
106GO:0009913: epidermal cell differentiation4.05E-03
107GO:0006828: manganese ion transport4.05E-03
108GO:0006014: D-ribose metabolic process4.05E-03
109GO:0006563: L-serine metabolic process4.05E-03
110GO:0000302: response to reactive oxygen species4.84E-03
111GO:0010019: chloroplast-nucleus signaling pathway4.88E-03
112GO:0009955: adaxial/abaxial pattern specification4.88E-03
113GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.88E-03
114GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.88E-03
115GO:1901259: chloroplast rRNA processing4.88E-03
116GO:0030163: protein catabolic process5.52E-03
117GO:0010103: stomatal complex morphogenesis5.77E-03
118GO:0010161: red light signaling pathway5.77E-03
119GO:0070370: cellular heat acclimation5.77E-03
120GO:0048564: photosystem I assembly6.70E-03
121GO:0010928: regulation of auxin mediated signaling pathway6.70E-03
122GO:0008610: lipid biosynthetic process6.70E-03
123GO:0009704: de-etiolation6.70E-03
124GO:0017004: cytochrome complex assembly7.69E-03
125GO:0001558: regulation of cell growth7.69E-03
126GO:0009657: plastid organization7.69E-03
127GO:0051865: protein autoubiquitination8.73E-03
128GO:0006783: heme biosynthetic process8.73E-03
129GO:0006779: porphyrin-containing compound biosynthetic process9.82E-03
130GO:0035999: tetrahydrofolate interconversion9.82E-03
131GO:0009631: cold acclimation1.06E-02
132GO:0043069: negative regulation of programmed cell death1.10E-02
133GO:0009853: photorespiration1.17E-02
134GO:0006816: calcium ion transport1.21E-02
135GO:0072593: reactive oxygen species metabolic process1.21E-02
136GO:0043085: positive regulation of catalytic activity1.21E-02
137GO:0006415: translational termination1.21E-02
138GO:0009750: response to fructose1.21E-02
139GO:0016485: protein processing1.21E-02
140GO:0045037: protein import into chloroplast stroma1.34E-02
141GO:0009767: photosynthetic electron transport chain1.46E-02
142GO:0010102: lateral root morphogenesis1.46E-02
143GO:0006108: malate metabolic process1.46E-02
144GO:0006508: proteolysis1.52E-02
145GO:0009266: response to temperature stimulus1.59E-02
146GO:0010207: photosystem II assembly1.59E-02
147GO:0019253: reductive pentose-phosphate cycle1.59E-02
148GO:0005985: sucrose metabolic process1.73E-02
149GO:0010025: wax biosynthetic process1.87E-02
150GO:0006636: unsaturated fatty acid biosynthetic process1.87E-02
151GO:0009944: polarity specification of adaxial/abaxial axis2.01E-02
152GO:0000027: ribosomal large subunit assembly2.01E-02
153GO:0009585: red, far-red light phototransduction2.03E-02
154GO:0006810: transport2.09E-02
155GO:0051302: regulation of cell division2.15E-02
156GO:0007017: microtubule-based process2.15E-02
157GO:0031408: oxylipin biosynthetic process2.30E-02
158GO:0016114: terpenoid biosynthetic process2.30E-02
159GO:0003333: amino acid transmembrane transport2.30E-02
160GO:0010017: red or far-red light signaling pathway2.46E-02
161GO:0016226: iron-sulfur cluster assembly2.46E-02
162GO:2000022: regulation of jasmonic acid mediated signaling pathway2.46E-02
163GO:0035428: hexose transmembrane transport2.46E-02
164GO:0009686: gibberellin biosynthetic process2.62E-02
165GO:0009411: response to UV2.62E-02
166GO:0001944: vasculature development2.62E-02
167GO:0010089: xylem development2.78E-02
168GO:0009306: protein secretion2.78E-02
169GO:0006979: response to oxidative stress2.90E-02
170GO:0016117: carotenoid biosynthetic process2.94E-02
171GO:0042335: cuticle development3.11E-02
172GO:0048868: pollen tube development3.28E-02
173GO:0046323: glucose import3.28E-02
174GO:0006662: glycerol ether metabolic process3.28E-02
175GO:0048825: cotyledon development3.63E-02
176GO:0032259: methylation3.98E-02
177GO:0042744: hydrogen peroxide catabolic process4.12E-02
178GO:0009790: embryo development4.22E-02
179GO:0000910: cytokinesis4.75E-02
180GO:0009793: embryo development ending in seed dormancy4.82E-02
181GO:0007623: circadian rhythm4.98E-02
RankGO TermAdjusted P value
1GO:0009899: ent-kaurene synthase activity0.00E+00
2GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
3GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
4GO:0051738: xanthophyll binding0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
7GO:0005363: maltose transmembrane transporter activity0.00E+00
8GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
9GO:0046422: violaxanthin de-epoxidase activity0.00E+00
10GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
13GO:0016166: phytoene dehydrogenase activity0.00E+00
14GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
15GO:0004822: isoleucine-tRNA ligase activity0.00E+00
16GO:0004823: leucine-tRNA ligase activity0.00E+00
17GO:0019843: rRNA binding3.21E-17
18GO:0003735: structural constituent of ribosome2.41E-11
19GO:0005528: FK506 binding1.99E-07
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.48E-07
21GO:0008266: poly(U) RNA binding3.83E-06
22GO:0051920: peroxiredoxin activity5.79E-06
23GO:0033201: alpha-1,4-glucan synthase activity6.33E-06
24GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.33E-06
25GO:0016209: antioxidant activity1.38E-05
26GO:0004373: glycogen (starch) synthase activity2.21E-05
27GO:0002161: aminoacyl-tRNA editing activity2.21E-05
28GO:0004375: glycine dehydrogenase (decarboxylating) activity4.86E-05
29GO:0016851: magnesium chelatase activity4.86E-05
30GO:0009011: starch synthase activity8.61E-05
31GO:0004130: cytochrome-c peroxidase activity1.92E-04
32GO:0004222: metalloendopeptidase activity2.03E-04
33GO:0004812: aminoacyl-tRNA ligase activity3.71E-04
34GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.75E-04
35GO:0008184: glycogen phosphorylase activity3.75E-04
36GO:0004856: xylulokinase activity3.75E-04
37GO:0080132: fatty acid alpha-hydroxylase activity3.75E-04
38GO:0009496: plastoquinol--plastocyanin reductase activity3.75E-04
39GO:0004134: 4-alpha-glucanotransferase activity3.75E-04
40GO:0004645: phosphorylase activity3.75E-04
41GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.75E-04
42GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.75E-04
43GO:0008158: hedgehog receptor activity3.75E-04
44GO:0004853: uroporphyrinogen decarboxylase activity3.75E-04
45GO:0045485: omega-6 fatty acid desaturase activity3.75E-04
46GO:0004832: valine-tRNA ligase activity3.75E-04
47GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity3.75E-04
48GO:0016491: oxidoreductase activity7.03E-04
49GO:0010297: heteropolysaccharide binding8.15E-04
50GO:0018708: thiol S-methyltransferase activity8.15E-04
51GO:0003844: 1,4-alpha-glucan branching enzyme activity8.15E-04
52GO:0008967: phosphoglycolate phosphatase activity8.15E-04
53GO:0004324: ferredoxin-NADP+ reductase activity1.32E-03
54GO:0043169: cation binding1.32E-03
55GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.32E-03
56GO:0017150: tRNA dihydrouridine synthase activity1.32E-03
57GO:0005504: fatty acid binding1.32E-03
58GO:0004148: dihydrolipoyl dehydrogenase activity1.32E-03
59GO:0004075: biotin carboxylase activity1.32E-03
60GO:0045174: glutathione dehydrogenase (ascorbate) activity1.32E-03
61GO:0030267: glyoxylate reductase (NADP) activity1.32E-03
62GO:0043023: ribosomal large subunit binding1.91E-03
63GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.91E-03
64GO:0016149: translation release factor activity, codon specific1.91E-03
65GO:0015203: polyamine transmembrane transporter activity1.91E-03
66GO:0004550: nucleoside diphosphate kinase activity1.91E-03
67GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.56E-03
68GO:0019104: DNA N-glycosylase activity2.56E-03
69GO:0045430: chalcone isomerase activity2.56E-03
70GO:0019199: transmembrane receptor protein kinase activity2.56E-03
71GO:0008878: glucose-1-phosphate adenylyltransferase activity2.56E-03
72GO:0042277: peptide binding2.56E-03
73GO:0003989: acetyl-CoA carboxylase activity3.28E-03
74GO:0008725: DNA-3-methyladenine glycosylase activity3.28E-03
75GO:0004372: glycine hydroxymethyltransferase activity3.28E-03
76GO:0003959: NADPH dehydrogenase activity3.28E-03
77GO:0016773: phosphotransferase activity, alcohol group as acceptor3.28E-03
78GO:0004040: amidase activity3.28E-03
79GO:2001070: starch binding4.05E-03
80GO:0016688: L-ascorbate peroxidase activity4.05E-03
81GO:0016615: malate dehydrogenase activity4.05E-03
82GO:0050662: coenzyme binding4.22E-03
83GO:0004601: peroxidase activity4.72E-03
84GO:0048038: quinone binding4.84E-03
85GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.88E-03
86GO:0004747: ribokinase activity4.88E-03
87GO:0004602: glutathione peroxidase activity4.88E-03
88GO:0030060: L-malate dehydrogenase activity4.88E-03
89GO:0004620: phospholipase activity5.77E-03
90GO:0008237: metallopeptidase activity6.24E-03
91GO:0004033: aldo-keto reductase (NADP) activity6.70E-03
92GO:0008865: fructokinase activity6.70E-03
93GO:0004252: serine-type endopeptidase activity8.61E-03
94GO:0003747: translation release factor activity8.73E-03
95GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.17E-03
96GO:0015174: basic amino acid transmembrane transporter activity9.82E-03
97GO:0005384: manganese ion transmembrane transporter activity9.82E-03
98GO:0008047: enzyme activator activity1.10E-02
99GO:0047372: acylglycerol lipase activity1.21E-02
100GO:0015386: potassium:proton antiporter activity1.21E-02
101GO:0000049: tRNA binding1.34E-02
102GO:0004089: carbonate dehydratase activity1.46E-02
103GO:0015095: magnesium ion transmembrane transporter activity1.46E-02
104GO:0004022: alcohol dehydrogenase (NAD) activity1.46E-02
105GO:0043621: protein self-association1.63E-02
106GO:0005198: structural molecule activity1.69E-02
107GO:0016787: hydrolase activity1.71E-02
108GO:0004190: aspartic-type endopeptidase activity1.73E-02
109GO:0008168: methyltransferase activity1.89E-02
110GO:0051536: iron-sulfur cluster binding2.01E-02
111GO:0004857: enzyme inhibitor activity2.01E-02
112GO:0015079: potassium ion transmembrane transporter activity2.15E-02
113GO:0004176: ATP-dependent peptidase activity2.30E-02
114GO:0003964: RNA-directed DNA polymerase activity2.30E-02
115GO:0022891: substrate-specific transmembrane transporter activity2.62E-02
116GO:0047134: protein-disulfide reductase activity2.94E-02
117GO:0004791: thioredoxin-disulfide reductase activity3.45E-02
118GO:0005355: glucose transmembrane transporter activity3.45E-02
119GO:0030170: pyridoxal phosphate binding4.02E-02
120GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.17E-02
121GO:0003924: GTPase activity4.20E-02
122GO:0003684: damaged DNA binding4.36E-02
123GO:0005515: protein binding4.50E-02
124GO:0005200: structural constituent of cytoskeleton4.55E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
4GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
5GO:0044391: ribosomal subunit0.00E+00
6GO:0009507: chloroplast6.61E-90
7GO:0009570: chloroplast stroma3.33E-68
8GO:0009941: chloroplast envelope8.35E-59
9GO:0009534: chloroplast thylakoid1.12E-55
10GO:0009535: chloroplast thylakoid membrane5.75E-41
11GO:0009579: thylakoid1.37E-36
12GO:0009543: chloroplast thylakoid lumen2.22E-20
13GO:0031977: thylakoid lumen4.50E-17
14GO:0005840: ribosome1.00E-11
15GO:0010287: plastoglobule4.22E-10
16GO:0009706: chloroplast inner membrane8.34E-08
17GO:0010319: stromule1.83E-07
18GO:0030095: chloroplast photosystem II3.83E-06
19GO:0009501: amyloplast1.38E-05
20GO:0010007: magnesium chelatase complex2.21E-05
21GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.72E-05
22GO:0009536: plastid4.13E-05
23GO:0005960: glycine cleavage complex4.86E-05
24GO:0031969: chloroplast membrane6.55E-05
25GO:0009295: nucleoid8.58E-05
26GO:0009508: plastid chromosome9.04E-05
27GO:0016020: membrane2.26E-04
28GO:0009533: chloroplast stromal thylakoid3.37E-04
29GO:0009538: photosystem I reaction center4.22E-04
30GO:0030093: chloroplast photosystem I8.15E-04
31GO:0000311: plastid large ribosomal subunit1.12E-03
32GO:0009509: chromoplast1.32E-03
33GO:0048046: apoplast1.54E-03
34GO:0009654: photosystem II oxygen evolving complex2.18E-03
35GO:0042651: thylakoid membrane2.18E-03
36GO:0009517: PSII associated light-harvesting complex II2.56E-03
37GO:0055035: plastid thylakoid membrane3.28E-03
38GO:0009512: cytochrome b6f complex3.28E-03
39GO:0009523: photosystem II4.53E-03
40GO:0019898: extrinsic component of membrane4.53E-03
41GO:0009840: chloroplastic endopeptidase Clp complex4.88E-03
42GO:0005763: mitochondrial small ribosomal subunit8.73E-03
43GO:0042644: chloroplast nucleoid8.73E-03
44GO:0045298: tubulin complex8.73E-03
45GO:0015934: large ribosomal subunit1.06E-02
46GO:0009574: preprophase band1.46E-02
47GO:0000312: plastid small ribosomal subunit1.59E-02
48GO:0043234: protein complex1.87E-02
49GO:0015935: small ribosomal subunit2.30E-02
50GO:0009532: plastid stroma2.30E-02
51GO:0022626: cytosolic ribosome2.61E-02
52GO:0022625: cytosolic large ribosomal subunit2.76E-02
53GO:0005623: cell3.72E-02
54GO:0005759: mitochondrial matrix4.54E-02
55GO:0030529: intracellular ribonucleoprotein complex4.94E-02
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Gene type



Gene DE type