co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0046294: formaldehyde catabolic process	0.00E+00
4	GO:0097164: ammonium ion metabolic process	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0046460: neutral lipid biosynthetic process	0.00E+00
7	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
8	GO:0019685: photosynthesis, dark reaction	0.00E+00
9	GO:0010343: singlet oxygen-mediated programmed cell death	2.86E-06
10	GO:2001141: regulation of RNA biosynthetic process	2.34E-05
11	GO:0009902: chloroplast relocation	4.26E-05
12	GO:0010207: photosystem II assembly	4.33E-05
13	GO:0009658: chloroplast organization	5.33E-05
14	GO:0010118: stomatal movement	1.82E-04
15	GO:0048564: photosystem I assembly	2.28E-04
16	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.28E-04
17	GO:0034970: histone H3-R2 methylation	2.48E-04
18	GO:0010362: negative regulation of anion channel activity by blue light	2.48E-04
19	GO:0034972: histone H3-R26 methylation	2.48E-04
20	GO:1902265: abscisic acid homeostasis	2.48E-04
21	GO:0034971: histone H3-R17 methylation	2.48E-04
22	GO:0072387: flavin adenine dinucleotide metabolic process	2.48E-04
23	GO:0042371: vitamin K biosynthetic process	2.48E-04
24	GO:0071454: cellular response to anoxia	2.48E-04
25	GO:0071461: cellular response to redox state	2.48E-04
26	GO:0071482: cellular response to light stimulus	2.82E-04
27	GO:0009638: phototropism	4.05E-04
28	GO:0009098: leucine biosynthetic process	4.05E-04
29	GO:0006352: DNA-templated transcription, initiation	5.47E-04
30	GO:1901529: positive regulation of anion channel activity	5.49E-04
31	GO:0060359: response to ammonium ion	5.49E-04
32	GO:0048255: mRNA stabilization	5.49E-04
33	GO:0080005: photosystem stoichiometry adjustment	5.49E-04
34	GO:2000071: regulation of defense response by callose deposition	5.49E-04
35	GO:0010617: circadian regulation of calcium ion oscillation	5.49E-04
36	GO:0070981: L-asparagine biosynthetic process	5.49E-04
37	GO:0007154: cell communication	5.49E-04
38	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.49E-04
39	GO:0099402: plant organ development	5.49E-04
40	GO:0006529: asparagine biosynthetic process	5.49E-04
41	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	5.49E-04
42	GO:0080153: negative regulation of reductive pentose-phosphate cycle	5.49E-04
43	GO:0009767: photosynthetic electron transport chain	7.09E-04
44	GO:0009637: response to blue light	8.35E-04
45	GO:0055114: oxidation-reduction process	8.38E-04
46	GO:0031022: nuclear migration along microfilament	8.92E-04
47	GO:1902448: positive regulation of shade avoidance	8.92E-04
48	GO:1901672: positive regulation of systemic acquired resistance	8.92E-04
49	GO:0009150: purine ribonucleotide metabolic process	8.92E-04
50	GO:0006696: ergosterol biosynthetic process	8.92E-04
51	GO:0044375: regulation of peroxisome size	8.92E-04
52	GO:0043157: response to cation stress	8.92E-04
53	GO:0007623: circadian rhythm	9.61E-04
54	GO:0006071: glycerol metabolic process	9.89E-04
55	GO:0090307: mitotic spindle assembly	1.27E-03
56	GO:0033014: tetrapyrrole biosynthetic process	1.27E-03
57	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.27E-03
58	GO:1901332: negative regulation of lateral root development	1.27E-03
59	GO:0006882: cellular zinc ion homeostasis	1.27E-03
60	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.27E-03
61	GO:0010371: regulation of gibberellin biosynthetic process	1.27E-03
62	GO:0006552: leucine catabolic process	1.70E-03
63	GO:0031122: cytoplasmic microtubule organization	1.70E-03
64	GO:1902347: response to strigolactone	1.70E-03
65	GO:0034613: cellular protein localization	1.70E-03
66	GO:0042274: ribosomal small subunit biogenesis	1.70E-03
67	GO:0016117: carotenoid biosynthetic process	1.84E-03
68	GO:0000304: response to singlet oxygen	2.17E-03
69	GO:0016120: carotene biosynthetic process	2.17E-03
70	GO:0010117: photoprotection	2.17E-03
71	GO:0046283: anthocyanin-containing compound metabolic process	2.17E-03
72	GO:0035434: copper ion transmembrane transport	2.17E-03
73	GO:0009646: response to absence of light	2.31E-03
74	GO:0006555: methionine metabolic process	2.67E-03
75	GO:1901371: regulation of leaf morphogenesis	2.67E-03
76	GO:0060918: auxin transport	2.67E-03
77	GO:0010190: cytochrome b6f complex assembly	2.67E-03
78	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.67E-03
79	GO:0009959: negative gravitropism	2.67E-03
80	GO:0019509: L-methionine salvage from methylthioadenosine	3.21E-03
81	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.21E-03
82	GO:0034389: lipid particle organization	3.21E-03
83	GO:0009903: chloroplast avoidance movement	3.21E-03
84	GO:0010019: chloroplast-nucleus signaling pathway	3.21E-03
85	GO:0010310: regulation of hydrogen peroxide metabolic process	3.21E-03
86	GO:1900056: negative regulation of leaf senescence	3.79E-03
87	GO:0030026: cellular manganese ion homeostasis	3.79E-03
88	GO:0051510: regulation of unidimensional cell growth	3.79E-03
89	GO:0009704: de-etiolation	4.39E-03
90	GO:0009231: riboflavin biosynthetic process	4.39E-03
91	GO:0016559: peroxisome fission	4.39E-03
92	GO:0018298: protein-chromophore linkage	4.97E-03
93	GO:0022900: electron transport chain	5.03E-03
94	GO:0019430: removal of superoxide radicals	5.03E-03
95	GO:0032544: plastid translation	5.03E-03
96	GO:0000160: phosphorelay signal transduction system	5.22E-03
97	GO:0010228: vegetative to reproductive phase transition of meristem	5.52E-03
98	GO:0019432: triglyceride biosynthetic process	5.70E-03
99	GO:0009821: alkaloid biosynthetic process	5.70E-03
100	GO:0006783: heme biosynthetic process	5.70E-03
101	GO:0015780: nucleotide-sugar transport	5.70E-03
102	GO:0006779: porphyrin-containing compound biosynthetic process	6.40E-03
103	GO:0010380: regulation of chlorophyll biosynthetic process	6.40E-03
104	GO:0008356: asymmetric cell division	6.40E-03
105	GO:1900426: positive regulation of defense response to bacterium	6.40E-03
106	GO:0051555: flavonol biosynthetic process	7.12E-03
107	GO:0055062: phosphate ion homeostasis	7.12E-03
108	GO:0045036: protein targeting to chloroplast	7.12E-03
109	GO:0006816: calcium ion transport	7.88E-03
110	GO:0009682: induced systemic resistance	7.88E-03
111	GO:0008285: negative regulation of cell proliferation	7.88E-03
112	GO:0043085: positive regulation of catalytic activity	7.88E-03
113	GO:0009640: photomorphogenesis	8.13E-03
114	GO:0009744: response to sucrose	8.13E-03
115	GO:0006790: sulfur compound metabolic process	8.66E-03
116	GO:0045037: protein import into chloroplast stroma	8.66E-03
117	GO:0009785: blue light signaling pathway	9.47E-03
118	GO:0030048: actin filament-based movement	9.47E-03
119	GO:0010075: regulation of meristem growth	9.47E-03
120	GO:0009725: response to hormone	9.47E-03
121	GO:0006508: proteolysis	9.93E-03
122	GO:0034605: cellular response to heat	1.03E-02
123	GO:0006541: glutamine metabolic process	1.03E-02
124	GO:0019253: reductive pentose-phosphate cycle	1.03E-02
125	GO:0009416: response to light stimulus	1.11E-02
126	GO:0007031: peroxisome organization	1.12E-02
127	GO:0046777: protein autophosphorylation	1.30E-02
128	GO:0006289: nucleotide-excision repair	1.30E-02
129	GO:2000377: regulation of reactive oxygen species metabolic process	1.30E-02
130	GO:0007017: microtubule-based process	1.39E-02
131	GO:0010073: meristem maintenance	1.39E-02
132	GO:0006825: copper ion transport	1.39E-02
133	GO:0031408: oxylipin biosynthetic process	1.49E-02
134	GO:0016226: iron-sulfur cluster assembly	1.59E-02
135	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.59E-02
136	GO:0010227: floral organ abscission	1.69E-02
137	GO:0006817: phosphate ion transport	1.79E-02
138	GO:0070417: cellular response to cold	1.90E-02
139	GO:0006810: transport	1.94E-02
140	GO:0042752: regulation of circadian rhythm	2.23E-02
141	GO:0009791: post-embryonic development	2.34E-02
142	GO:0002229: defense response to oomycetes	2.46E-02
143	GO:0019761: glucosinolate biosynthetic process	2.58E-02
144	GO:0009630: gravitropism	2.58E-02
145	GO:0030163: protein catabolic process	2.70E-02
146	GO:0016126: sterol biosynthetic process	3.19E-02
147	GO:0010027: thylakoid membrane organization	3.19E-02
148	GO:0010029: regulation of seed germination	3.32E-02
149	GO:0009816: defense response to bacterium, incompatible interaction	3.32E-02
150	GO:0015995: chlorophyll biosynthetic process	3.59E-02
151	GO:0006811: ion transport	4.14E-02
152	GO:0009407: toxin catabolic process	4.14E-02
153	GO:0010218: response to far red light	4.14E-02
154	GO:0042254: ribosome biogenesis	4.26E-02
155	GO:0009631: cold acclimation	4.28E-02
156	GO:0010043: response to zinc ion	4.28E-02
157	GO:0007568: aging	4.28E-02
158	GO:0009910: negative regulation of flower development	4.28E-02
159	GO:0009867: jasmonic acid mediated signaling pathway	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
2	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
3	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
4	GO:0046905: phytoene synthase activity	0.00E+00
5	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
6	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
7	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
8	GO:0045436: lycopene beta cyclase activity	0.00E+00
9	GO:0004848: ureidoglycolate hydrolase activity	1.03E-05
10	GO:0004180: carboxypeptidase activity	1.03E-05
11	GO:0048038: quinone binding	1.60E-05
12	GO:0009882: blue light photoreceptor activity	2.34E-05
13	GO:0016987: sigma factor activity	4.26E-05
14	GO:0001053: plastid sigma factor activity	4.26E-05
15	GO:0015085: calcium ion transmembrane transporter activity	2.48E-04
16	GO:0004071: aspartate-ammonia ligase activity	2.48E-04
17	GO:0004325: ferrochelatase activity	2.48E-04
18	GO:0051996: squalene synthase activity	2.48E-04
19	GO:0016783: sulfurtransferase activity	2.48E-04
20	GO:0030941: chloroplast targeting sequence binding	2.48E-04
21	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.48E-04
22	GO:0004485: methylcrotonoyl-CoA carboxylase activity	2.48E-04
23	GO:0046906: tetrapyrrole binding	2.48E-04
24	GO:0071949: FAD binding	3.41E-04
25	GO:0016491: oxidoreductase activity	4.73E-04
26	GO:0004046: aminoacylase activity	5.49E-04
27	GO:0003988: acetyl-CoA C-acyltransferase activity	5.49E-04
28	GO:0035241: protein-arginine omega-N monomethyltransferase activity	5.49E-04
29	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	5.49E-04
30	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.49E-04
31	GO:0003862: 3-isopropylmalate dehydrogenase activity	5.49E-04
32	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	5.49E-04
33	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	5.49E-04
34	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	5.49E-04
35	GO:0004222: metalloendopeptidase activity	7.01E-04
36	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.92E-04
37	GO:0032947: protein complex scaffold	8.92E-04
38	GO:0003861: 3-isopropylmalate dehydratase activity	8.92E-04
39	GO:0003935: GTP cyclohydrolase II activity	8.92E-04
40	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.92E-04
41	GO:0004075: biotin carboxylase activity	8.92E-04
42	GO:0008469: histone-arginine N-methyltransferase activity	8.92E-04
43	GO:0000254: C-4 methylsterol oxidase activity	1.27E-03
44	GO:0016851: magnesium chelatase activity	1.27E-03
45	GO:0004792: thiosulfate sulfurtransferase activity	1.27E-03
46	GO:0047627: adenylylsulfatase activity	1.27E-03
47	GO:0004176: ATP-dependent peptidase activity	1.32E-03
48	GO:0015369: calcium:proton antiporter activity	1.70E-03
49	GO:0043015: gamma-tubulin binding	1.70E-03
50	GO:0015368: calcium:cation antiporter activity	1.70E-03
51	GO:0051861: glycolipid binding	1.70E-03
52	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.70E-03
53	GO:0051011: microtubule minus-end binding	2.17E-03
54	GO:0000293: ferric-chelate reductase activity	2.67E-03
55	GO:0004784: superoxide dismutase activity	2.67E-03
56	GO:0004518: nuclease activity	2.82E-03
57	GO:0015631: tubulin binding	3.21E-03
58	GO:0004144: diacylglycerol O-acyltransferase activity	3.21E-03
59	GO:0008237: metallopeptidase activity	3.40E-03
60	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.79E-03
61	GO:0016621: cinnamoyl-CoA reductase activity	3.79E-03
62	GO:0019899: enzyme binding	3.79E-03
63	GO:0008236: serine-type peptidase activity	4.72E-03
64	GO:0005375: copper ion transmembrane transporter activity	5.03E-03
65	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.70E-03
66	GO:0016844: strictosidine synthase activity	6.40E-03
67	GO:0042802: identical protein binding	7.07E-03
68	GO:0004129: cytochrome-c oxidase activity	7.88E-03
69	GO:0016788: hydrolase activity, acting on ester bonds	9.31E-03
70	GO:0005315: inorganic phosphate transmembrane transporter activity	9.47E-03
71	GO:0031072: heat shock protein binding	9.47E-03
72	GO:0000155: phosphorelay sensor kinase activity	9.47E-03
73	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.03E-02
74	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.10E-02
75	GO:0003887: DNA-directed DNA polymerase activity	1.21E-02
76	GO:0051536: iron-sulfur cluster binding	1.30E-02
77	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.34E-02
78	GO:0022857: transmembrane transporter activity	1.47E-02
79	GO:0042803: protein homodimerization activity	1.59E-02
80	GO:0019843: rRNA binding	1.96E-02
81	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.02E-02
82	GO:0008080: N-acetyltransferase activity	2.12E-02
83	GO:0010181: FMN binding	2.23E-02
84	GO:0050662: coenzyme binding	2.23E-02
85	GO:0004872: receptor activity	2.34E-02
86	GO:0000156: phosphorelay response regulator activity	2.70E-02
87	GO:0005200: structural constituent of cytoskeleton	2.94E-02
88	GO:0008194: UDP-glycosyltransferase activity	3.03E-02
89	GO:0005506: iron ion binding	3.11E-02
90	GO:0030247: polysaccharide binding	3.59E-02
91	GO:0008168: methyltransferase activity	4.03E-02
92	GO:0004601: peroxidase activity	4.19E-02
93	GO:0050897: cobalt ion binding	4.28E-02
94	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.56E-02
95	GO:0003746: translation elongation factor activity	4.56E-02
96	GO:0046872: metal ion binding	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.38E-26
2	GO:0009535: chloroplast thylakoid membrane	2.80E-10
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.99E-06
4	GO:0031969: chloroplast membrane	9.09E-05
5	GO:0008274: gamma-tubulin ring complex	5.49E-04
6	GO:0016605: PML body	8.92E-04
7	GO:0005777: peroxisome	9.77E-04
8	GO:0042646: plastid nucleoid	1.27E-03
9	GO:0000923: equatorial microtubule organizing center	1.27E-03
10	GO:0009536: plastid	1.35E-03
11	GO:0030286: dynein complex	1.70E-03
12	GO:0005773: vacuole	1.98E-03
13	GO:0055035: plastid thylakoid membrane	2.17E-03
14	GO:0009840: chloroplastic endopeptidase Clp complex	3.21E-03
15	GO:0009570: chloroplast stroma	3.54E-03
16	GO:0031359: integral component of chloroplast outer membrane	3.79E-03
17	GO:0005779: integral component of peroxisomal membrane	5.03E-03
18	GO:0005811: lipid particle	5.03E-03
19	GO:0042644: chloroplast nucleoid	5.70E-03
20	GO:0000922: spindle pole	5.70E-03
21	GO:0016604: nuclear body	6.40E-03
22	GO:0043234: protein complex	1.21E-02
23	GO:0005875: microtubule associated complex	1.21E-02
24	GO:0042651: thylakoid membrane	1.39E-02
25	GO:0009534: chloroplast thylakoid	1.48E-02
26	GO:0015935: small ribosomal subunit	1.49E-02
27	GO:0009706: chloroplast inner membrane	1.57E-02
28	GO:0009543: chloroplast thylakoid lumen	1.96E-02
29	GO:0005623: cell	2.02E-02
30	GO:0009295: nucleoid	2.94E-02
31	GO:0005778: peroxisomal membrane	2.94E-02
32	GO:0009707: chloroplast outer membrane	3.86E-02
33	GO:0009579: thylakoid	4.97E-02