Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G47890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:1904526: regulation of microtubule binding0.00E+00
3GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
4GO:0010378: temperature compensation of the circadian clock0.00E+00
5GO:0080021: response to benzoic acid0.00E+00
6GO:1905177: tracheary element differentiation0.00E+00
7GO:0071475: cellular hyperosmotic salinity response0.00E+00
8GO:0009409: response to cold2.31E-07
9GO:0042335: cuticle development2.19E-06
10GO:0000038: very long-chain fatty acid metabolic process2.63E-06
11GO:0010025: wax biosynthetic process1.07E-05
12GO:0070417: cellular response to cold4.12E-05
13GO:0009913: epidermal cell differentiation2.48E-04
14GO:0035435: phosphate ion transmembrane transport2.48E-04
15GO:0009631: cold acclimation3.29E-04
16GO:0045926: negative regulation of growth3.33E-04
17GO:0001944: vasculature development4.10E-04
18GO:0000023: maltose metabolic process4.43E-04
19GO:0000025: maltose catabolic process4.43E-04
20GO:0009609: response to symbiotic bacterium4.43E-04
21GO:1902265: abscisic acid homeostasis4.43E-04
22GO:0097298: regulation of nucleus size4.43E-04
23GO:0009865: pollen tube adhesion4.43E-04
24GO:0032958: inositol phosphate biosynthetic process4.43E-04
25GO:0080051: cutin transport4.43E-04
26GO:0008610: lipid biosynthetic process5.37E-04
27GO:0009819: drought recovery5.37E-04
28GO:0042631: cellular response to water deprivation5.62E-04
29GO:0009873: ethylene-activated signaling pathway6.09E-04
30GO:0006633: fatty acid biosynthetic process6.55E-04
31GO:0009827: plant-type cell wall modification6.55E-04
32GO:0031407: oxylipin metabolic process9.56E-04
33GO:0010289: homogalacturonan biosynthetic process9.56E-04
34GO:0071712: ER-associated misfolded protein catabolic process9.56E-04
35GO:0048569: post-embryonic animal organ development9.56E-04
36GO:0032527: protein exit from endoplasmic reticulum9.56E-04
37GO:0005976: polysaccharide metabolic process9.56E-04
38GO:1901679: nucleotide transmembrane transport9.56E-04
39GO:0015786: UDP-glucose transport9.56E-04
40GO:0015908: fatty acid transport9.56E-04
41GO:0051170: nuclear import9.56E-04
42GO:0006898: receptor-mediated endocytosis9.56E-04
43GO:0015709: thiosulfate transport9.56E-04
44GO:0071422: succinate transmembrane transport9.56E-04
45GO:0030148: sphingolipid biosynthetic process1.24E-03
46GO:0005983: starch catabolic process1.41E-03
47GO:0071367: cellular response to brassinosteroid stimulus1.56E-03
48GO:0044210: 'de novo' CTP biosynthetic process1.56E-03
49GO:0016045: detection of bacterium1.56E-03
50GO:0032940: secretion by cell1.56E-03
51GO:0010359: regulation of anion channel activity1.56E-03
52GO:0010623: programmed cell death involved in cell development1.56E-03
53GO:0080121: AMP transport1.56E-03
54GO:0090630: activation of GTPase activity1.56E-03
55GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid1.56E-03
56GO:0015783: GDP-fucose transport1.56E-03
57GO:0009737: response to abscisic acid1.76E-03
58GO:1901000: regulation of response to salt stress2.25E-03
59GO:0070301: cellular response to hydrogen peroxide2.25E-03
60GO:0015729: oxaloacetate transport2.25E-03
61GO:0072334: UDP-galactose transmembrane transport2.25E-03
62GO:0043481: anthocyanin accumulation in tissues in response to UV light2.25E-03
63GO:0030100: regulation of endocytosis2.25E-03
64GO:0010104: regulation of ethylene-activated signaling pathway2.25E-03
65GO:0080024: indolebutyric acid metabolic process2.25E-03
66GO:0010371: regulation of gibberellin biosynthetic process2.25E-03
67GO:0006020: inositol metabolic process2.25E-03
68GO:0009833: plant-type primary cell wall biogenesis2.27E-03
69GO:0080167: response to karrikin2.44E-03
70GO:0046345: abscisic acid catabolic process3.03E-03
71GO:0015689: molybdate ion transport3.03E-03
72GO:0051365: cellular response to potassium ion starvation3.03E-03
73GO:0071585: detoxification of cadmium ion3.03E-03
74GO:2000122: negative regulation of stomatal complex development3.03E-03
75GO:0022622: root system development3.03E-03
76GO:0042991: transcription factor import into nucleus3.03E-03
77GO:0006552: leucine catabolic process3.03E-03
78GO:0010508: positive regulation of autophagy3.03E-03
79GO:0015867: ATP transport3.03E-03
80GO:0010037: response to carbon dioxide3.03E-03
81GO:0010222: stem vascular tissue pattern formation3.03E-03
82GO:0009687: abscisic acid metabolic process3.03E-03
83GO:0015976: carbon utilization3.03E-03
84GO:0007623: circadian rhythm3.53E-03
85GO:0045490: pectin catabolic process3.53E-03
86GO:0071215: cellular response to abscisic acid stimulus3.65E-03
87GO:0006355: regulation of transcription, DNA-templated3.77E-03
88GO:0006665: sphingolipid metabolic process3.88E-03
89GO:0048578: positive regulation of long-day photoperiodism, flowering3.88E-03
90GO:0009697: salicylic acid biosynthetic process3.88E-03
91GO:0070897: DNA-templated transcriptional preinitiation complex assembly3.88E-03
92GO:0071423: malate transmembrane transport3.88E-03
93GO:0009823: cytokinin catabolic process3.88E-03
94GO:0006656: phosphatidylcholine biosynthetic process3.88E-03
95GO:0048497: maintenance of floral organ identity3.88E-03
96GO:0006461: protein complex assembly3.88E-03
97GO:0009611: response to wounding4.27E-03
98GO:0006470: protein dephosphorylation4.33E-03
99GO:0000470: maturation of LSU-rRNA4.80E-03
100GO:0047484: regulation of response to osmotic stress4.80E-03
101GO:1900425: negative regulation of defense response to bacterium4.80E-03
102GO:0010337: regulation of salicylic acid metabolic process4.80E-03
103GO:0006574: valine catabolic process4.80E-03
104GO:0015866: ADP transport4.80E-03
105GO:0048868: pollen tube development5.01E-03
106GO:0009955: adaxial/abaxial pattern specification5.79E-03
107GO:0071470: cellular response to osmotic stress5.79E-03
108GO:0048825: cotyledon development5.79E-03
109GO:0009082: branched-chain amino acid biosynthetic process5.79E-03
110GO:0010016: shoot system morphogenesis5.79E-03
111GO:0098655: cation transmembrane transport5.79E-03
112GO:0009861: jasmonic acid and ethylene-dependent systemic resistance5.79E-03
113GO:0010555: response to mannitol5.79E-03
114GO:0006979: response to oxidative stress5.83E-03
115GO:0000302: response to reactive oxygen species6.19E-03
116GO:0048367: shoot system development6.36E-03
117GO:0030497: fatty acid elongation6.85E-03
118GO:0008272: sulfate transport6.85E-03
119GO:0050829: defense response to Gram-negative bacterium6.85E-03
120GO:1902074: response to salt6.85E-03
121GO:0010103: stomatal complex morphogenesis6.85E-03
122GO:0032880: regulation of protein localization6.85E-03
123GO:0042545: cell wall modification7.45E-03
124GO:0019760: glucosinolate metabolic process7.52E-03
125GO:0007155: cell adhesion7.97E-03
126GO:0030091: protein repair7.97E-03
127GO:0035265: organ growth7.97E-03
128GO:0009690: cytokinin metabolic process7.97E-03
129GO:0042255: ribosome assembly7.97E-03
130GO:2000070: regulation of response to water deprivation7.97E-03
131GO:0006353: DNA-templated transcription, termination7.97E-03
132GO:0001558: regulation of cell growth9.15E-03
133GO:0006997: nucleus organization9.15E-03
134GO:0098656: anion transmembrane transport1.04E-02
135GO:0006098: pentose-phosphate shunt1.04E-02
136GO:0016567: protein ubiquitination1.13E-02
137GO:0006351: transcription, DNA-templated1.16E-02
138GO:0042761: very long-chain fatty acid biosynthetic process1.17E-02
139GO:2000280: regulation of root development1.17E-02
140GO:0048268: clathrin coat assembly1.17E-02
141GO:0009817: defense response to fungus, incompatible interaction1.18E-02
142GO:0030244: cellulose biosynthetic process1.18E-02
143GO:0000160: phosphorelay signal transduction system1.24E-02
144GO:0006949: syncytium formation1.30E-02
145GO:0006811: ion transport1.30E-02
146GO:0010218: response to far red light1.30E-02
147GO:0009651: response to salt stress1.43E-02
148GO:0010072: primary shoot apical meristem specification1.45E-02
149GO:0052544: defense response by callose deposition in cell wall1.45E-02
150GO:0048765: root hair cell differentiation1.45E-02
151GO:0016051: carbohydrate biosynthetic process1.49E-02
152GO:0009637: response to blue light1.49E-02
153GO:0009414: response to water deprivation1.54E-02
154GO:0010150: leaf senescence1.56E-02
155GO:0002213: defense response to insect1.59E-02
156GO:0016024: CDP-diacylglycerol biosynthetic process1.59E-02
157GO:0045037: protein import into chloroplast stroma1.59E-02
158GO:0009751: response to salicylic acid1.68E-02
159GO:0006839: mitochondrial transport1.71E-02
160GO:0010588: cotyledon vascular tissue pattern formation1.74E-02
161GO:2000012: regulation of auxin polar transport1.74E-02
162GO:0010102: lateral root morphogenesis1.74E-02
163GO:0050826: response to freezing1.74E-02
164GO:0018107: peptidyl-threonine phosphorylation1.74E-02
165GO:0009725: response to hormone1.74E-02
166GO:0006631: fatty acid metabolic process1.78E-02
167GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.79E-02
168GO:0048364: root development1.83E-02
169GO:0010143: cutin biosynthetic process1.90E-02
170GO:0009266: response to temperature stimulus1.90E-02
171GO:0009640: photomorphogenesis1.93E-02
172GO:0010114: response to red light1.93E-02
173GO:0009744: response to sucrose1.93E-02
174GO:0010167: response to nitrate2.06E-02
175GO:0010030: positive regulation of seed germination2.06E-02
176GO:0070588: calcium ion transmembrane transport2.06E-02
177GO:0006636: unsaturated fatty acid biosynthetic process2.23E-02
178GO:0030150: protein import into mitochondrial matrix2.40E-02
179GO:0006289: nucleotide-excision repair2.40E-02
180GO:0042538: hyperosmotic salinity response2.43E-02
181GO:0051302: regulation of cell division2.57E-02
182GO:0007017: microtubule-based process2.57E-02
183GO:0009809: lignin biosynthetic process2.61E-02
184GO:0009269: response to desiccation2.75E-02
185GO:0031408: oxylipin biosynthetic process2.75E-02
186GO:0051260: protein homooligomerization2.75E-02
187GO:0048511: rhythmic process2.75E-02
188GO:0010017: red or far-red light signaling pathway2.93E-02
189GO:0080092: regulation of pollen tube growth2.93E-02
190GO:0043086: negative regulation of catalytic activity3.08E-02
191GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.12E-02
192GO:0071369: cellular response to ethylene stimulus3.12E-02
193GO:0006284: base-excision repair3.31E-02
194GO:0010089: xylem development3.31E-02
195GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.51E-02
196GO:0008284: positive regulation of cell proliferation3.51E-02
197GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.68E-02
198GO:0010200: response to chitin3.68E-02
199GO:0000226: microtubule cytoskeleton organization3.71E-02
200GO:0009624: response to nematode3.71E-02
201GO:0010268: brassinosteroid homeostasis3.91E-02
202GO:0009958: positive gravitropism3.91E-02
203GO:0009960: endosperm development3.91E-02
204GO:0045489: pectin biosynthetic process3.91E-02
205GO:0010154: fruit development3.91E-02
206GO:0009416: response to light stimulus4.00E-02
207GO:0042752: regulation of circadian rhythm4.12E-02
208GO:0010183: pollen tube guidance4.33E-02
209GO:0009749: response to glucose4.33E-02
210GO:0019252: starch biosynthetic process4.33E-02
211GO:0045892: negative regulation of transcription, DNA-templated4.49E-02
212GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.54E-02
213GO:0016132: brassinosteroid biosynthetic process4.54E-02
214GO:0010583: response to cyclopentenone4.76E-02
215GO:0032502: developmental process4.76E-02
216GO:0009058: biosynthetic process4.87E-02
217GO:0030154: cell differentiation4.94E-02
RankGO TermAdjusted P value
1GO:0052631: sphingolipid delta-8 desaturase activity0.00E+00
2GO:0010303: limit dextrinase activity0.00E+00
3GO:0017048: Rho GTPase binding0.00E+00
4GO:0051060: pullulanase activity0.00E+00
5GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
6GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.07E-05
7GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.07E-05
8GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.07E-05
9GO:0003883: CTP synthase activity6.46E-05
10GO:0009922: fatty acid elongase activity1.74E-04
11GO:0000829: inositol heptakisphosphate kinase activity4.43E-04
12GO:0004105: choline-phosphate cytidylyltransferase activity4.43E-04
13GO:0004134: 4-alpha-glucanotransferase activity4.43E-04
14GO:0052638: indole-3-butyrate beta-glucosyltransferase activity4.43E-04
15GO:0000828: inositol hexakisphosphate kinase activity4.43E-04
16GO:0005534: galactose binding4.43E-04
17GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity4.43E-04
18GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity4.43E-04
19GO:0015245: fatty acid transporter activity4.43E-04
20GO:0033857: diphosphoinositol-pentakisphosphate kinase activity4.43E-04
21GO:1901677: phosphate transmembrane transporter activity9.56E-04
22GO:0050736: O-malonyltransferase activity9.56E-04
23GO:0016629: 12-oxophytodienoate reductase activity9.56E-04
24GO:0015117: thiosulfate transmembrane transporter activity9.56E-04
25GO:0017022: myosin binding9.56E-04
26GO:0042389: omega-3 fatty acid desaturase activity9.56E-04
27GO:0017040: ceramidase activity9.56E-04
28GO:0044390: ubiquitin-like protein conjugating enzyme binding9.56E-04
29GO:0010297: heteropolysaccharide binding9.56E-04
30GO:0047216: inositol 3-alpha-galactosyltransferase activity9.56E-04
31GO:0070330: aromatase activity1.56E-03
32GO:0005310: dicarboxylic acid transmembrane transporter activity1.56E-03
33GO:0010295: (+)-abscisic acid 8'-hydroxylase activity1.56E-03
34GO:0017108: 5'-flap endonuclease activity1.56E-03
35GO:0015141: succinate transmembrane transporter activity1.56E-03
36GO:0005457: GDP-fucose transmembrane transporter activity1.56E-03
37GO:0052655: L-valine transaminase activity2.25E-03
38GO:0015131: oxaloacetate transmembrane transporter activity2.25E-03
39GO:0005460: UDP-glucose transmembrane transporter activity2.25E-03
40GO:0052656: L-isoleucine transaminase activity2.25E-03
41GO:0052654: L-leucine transaminase activity2.25E-03
42GO:0019104: DNA N-glycosylase activity3.03E-03
43GO:0004084: branched-chain-amino-acid transaminase activity3.03E-03
44GO:0015098: molybdate ion transmembrane transporter activity3.03E-03
45GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway3.03E-03
46GO:0043565: sequence-specific DNA binding3.78E-03
47GO:0010294: abscisic acid glucosyltransferase activity3.88E-03
48GO:0005459: UDP-galactose transmembrane transporter activity3.88E-03
49GO:0019139: cytokinin dehydrogenase activity3.88E-03
50GO:0018685: alkane 1-monooxygenase activity3.88E-03
51GO:0080122: AMP transmembrane transporter activity3.88E-03
52GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.88E-03
53GO:0004556: alpha-amylase activity4.80E-03
54GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.80E-03
55GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.80E-03
56GO:2001070: starch binding4.80E-03
57GO:0045330: aspartyl esterase activity5.62E-03
58GO:0015217: ADP transmembrane transporter activity5.79E-03
59GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.79E-03
60GO:0004602: glutathione peroxidase activity5.79E-03
61GO:0005347: ATP transmembrane transporter activity5.79E-03
62GO:0016621: cinnamoyl-CoA reductase activity6.85E-03
63GO:0015140: malate transmembrane transporter activity6.85E-03
64GO:0004620: phospholipase activity6.85E-03
65GO:0000156: phosphorelay response regulator activity7.06E-03
66GO:0030599: pectinesterase activity7.17E-03
67GO:0015288: porin activity7.97E-03
68GO:0016209: antioxidant activity7.97E-03
69GO:0052747: sinapyl alcohol dehydrogenase activity7.97E-03
70GO:0016746: transferase activity, transferring acyl groups8.04E-03
71GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.15E-03
72GO:0008375: acetylglucosaminyltransferase activity1.00E-02
73GO:0061630: ubiquitin protein ligase activity1.03E-02
74GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.12E-02
75GO:0004842: ubiquitin-protein transferase activity1.15E-02
76GO:0005096: GTPase activator activity1.24E-02
77GO:0005545: 1-phosphatidylinositol binding1.30E-02
78GO:0015020: glucuronosyltransferase activity1.30E-02
79GO:0046910: pectinesterase inhibitor activity1.42E-02
80GO:0004722: protein serine/threonine phosphatase activity1.44E-02
81GO:0047372: acylglycerol lipase activity1.45E-02
82GO:0015386: potassium:proton antiporter activity1.45E-02
83GO:0015116: sulfate transmembrane transporter activity1.59E-02
84GO:0045551: cinnamyl-alcohol dehydrogenase activity1.59E-02
85GO:0015114: phosphate ion transmembrane transporter activity1.74E-02
86GO:0004022: alcohol dehydrogenase (NAD) activity1.74E-02
87GO:0015266: protein channel activity1.74E-02
88GO:0004089: carbonate dehydratase activity1.74E-02
89GO:0005262: calcium channel activity1.74E-02
90GO:0008083: growth factor activity1.90E-02
91GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.90E-02
92GO:0017025: TBP-class protein binding2.06E-02
93GO:0008146: sulfotransferase activity2.06E-02
94GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.11E-02
95GO:0043130: ubiquitin binding2.40E-02
96GO:0015079: potassium ion transmembrane transporter activity2.57E-02
97GO:0035251: UDP-glucosyltransferase activity2.75E-02
98GO:0008289: lipid binding2.81E-02
99GO:0003700: transcription factor activity, sequence-specific DNA binding2.84E-02
100GO:0030570: pectate lyase activity3.12E-02
101GO:0016760: cellulose synthase (UDP-forming) activity3.12E-02
102GO:0003727: single-stranded RNA binding3.31E-02
103GO:0016757: transferase activity, transferring glycosyl groups3.32E-02
104GO:0080044: quercetin 7-O-glucosyltransferase activity3.39E-02
105GO:0080043: quercetin 3-O-glucosyltransferase activity3.39E-02
106GO:0016874: ligase activity3.49E-02
107GO:0005249: voltage-gated potassium channel activity3.71E-02
108GO:0030276: clathrin binding3.91E-02
109GO:0003713: transcription coactivator activity3.91E-02
110GO:0010181: FMN binding4.12E-02
111GO:0044212: transcription regulatory region DNA binding4.31E-02
112GO:0004872: receptor activity4.33E-02
113GO:0016758: transferase activity, transferring hexosyl groups4.51E-02
114GO:0019843: rRNA binding4.63E-02
115GO:0004518: nuclease activity4.76E-02
RankGO TermAdjusted P value
1GO:0033557: Slx1-Slx4 complex0.00E+00
2GO:0034426: etioplast membrane0.00E+00
3GO:0031357: integral component of chloroplast inner membrane8.68E-06
4GO:0070382: exocytic vesicle4.43E-04
5GO:0009941: chloroplast envelope5.18E-04
6GO:0030133: transport vesicle9.56E-04
7GO:0042170: plastid membrane9.56E-04
8GO:0009897: external side of plasma membrane1.56E-03
9GO:0005652: nuclear lamina1.56E-03
10GO:0045177: apical part of cell2.25E-03
11GO:0036513: Derlin-1 retrotranslocation complex2.25E-03
12GO:0008076: voltage-gated potassium channel complex2.25E-03
13GO:0009527: plastid outer membrane3.03E-03
14GO:0000793: condensed chromosome4.80E-03
15GO:0005798: Golgi-associated vesicle4.80E-03
16GO:0000794: condensed nuclear chromosome6.85E-03
17GO:0034399: nuclear periphery7.97E-03
18GO:0031305: integral component of mitochondrial inner membrane7.97E-03
19GO:0046930: pore complex9.15E-03
20GO:0009505: plant-type cell wall9.31E-03
21GO:0005618: cell wall9.54E-03
22GO:0045298: tubulin complex1.04E-02
23GO:0005768: endosome1.32E-02
24GO:0016020: membrane1.57E-02
25GO:0009508: plastid chromosome1.74E-02
26GO:0005938: cell cortex1.74E-02
27GO:0005783: endoplasmic reticulum2.01E-02
28GO:0046658: anchored component of plasma membrane2.22E-02
29GO:0005769: early endosome2.23E-02
30GO:0005875: microtubule associated complex2.23E-02
31GO:0005886: plasma membrane2.33E-02
32GO:0016021: integral component of membrane2.66E-02
33GO:0005905: clathrin-coated pit2.75E-02
34GO:0005802: trans-Golgi network2.93E-02
35GO:0005744: mitochondrial inner membrane presequence translocase complex3.31E-02
36GO:0005622: intracellular3.48E-02
37GO:0030136: clathrin-coated vesicle3.51E-02
38GO:0005789: endoplasmic reticulum membrane3.57E-02
39GO:0031965: nuclear membrane4.33E-02
40GO:0010287: plastoglobule4.39E-02
41GO:0005654: nucleoplasm4.51E-02
42GO:0071944: cell periphery4.98E-02
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Gene type



Gene DE type