co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
2	GO:0045047: protein targeting to ER	0.00E+00
3	GO:0030970: retrograde protein transport, ER to cytosol	0.00E+00
4	GO:1901997: negative regulation of indoleacetic acid biosynthetic process via tryptophan	0.00E+00
5	GO:0019307: mannose biosynthetic process	0.00E+00
6	GO:0034976: response to endoplasmic reticulum stress	4.44E-15
7	GO:0006457: protein folding	9.03E-15
8	GO:0006511: ubiquitin-dependent protein catabolic process	1.23E-14
9	GO:0030433: ubiquitin-dependent ERAD pathway	6.80E-10
10	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.69E-08
11	GO:0051788: response to misfolded protein	2.70E-07
12	GO:0009651: response to salt stress	5.52E-07
13	GO:0045454: cell redox homeostasis	1.07E-06
14	GO:0051603: proteolysis involved in cellular protein catabolic process	8.94E-06
15	GO:0043248: proteasome assembly	1.23E-05
16	GO:0030163: protein catabolic process	2.43E-05
17	GO:0046686: response to cadmium ion	2.81E-05
18	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.18E-05
19	GO:0035266: meristem growth	6.91E-05
20	GO:0007292: female gamete generation	6.91E-05
21	GO:0006487: protein N-linked glycosylation	1.94E-04
22	GO:0006651: diacylglycerol biosynthetic process	2.81E-04
23	GO:0010366: negative regulation of ethylene biosynthetic process	2.81E-04
24	GO:0060968: regulation of gene silencing	2.81E-04
25	GO:0046168: glycerol-3-phosphate catabolic process	2.81E-04
26	GO:0032940: secretion by cell	2.81E-04
27	GO:0006013: mannose metabolic process	2.81E-04
28	GO:0055074: calcium ion homeostasis	2.81E-04
29	GO:0042147: retrograde transport, endosome to Golgi	3.38E-04
30	GO:0001676: long-chain fatty acid metabolic process	4.06E-04
31	GO:0009298: GDP-mannose biosynthetic process	4.06E-04
32	GO:0006072: glycerol-3-phosphate metabolic process	4.06E-04
33	GO:0009647: skotomorphogenesis	4.06E-04
34	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.55E-04
35	GO:0009735: response to cytokinin	6.65E-04
36	GO:0036065: fucosylation	6.87E-04
37	GO:0048827: phyllome development	8.40E-04
38	GO:0048232: male gamete generation	8.40E-04
39	GO:0009554: megasporogenesis	9.99E-04
40	GO:1901001: negative regulation of response to salt stress	9.99E-04
41	GO:0009612: response to mechanical stimulus	9.99E-04
42	GO:0045087: innate immune response	1.12E-03
43	GO:0048528: post-embryonic root development	1.17E-03
44	GO:0031540: regulation of anthocyanin biosynthetic process	1.34E-03
45	GO:0006605: protein targeting	1.34E-03
46	GO:0010078: maintenance of root meristem identity	1.34E-03
47	GO:0030968: endoplasmic reticulum unfolded protein response	1.53E-03
48	GO:0009965: leaf morphogenesis	1.59E-03
49	GO:0006886: intracellular protein transport	1.66E-03
50	GO:0046685: response to arsenic-containing substance	1.73E-03
51	GO:0010205: photoinhibition	1.93E-03
52	GO:0043067: regulation of programmed cell death	1.93E-03
53	GO:0010449: root meristem growth	1.93E-03
54	GO:0048829: root cap development	2.14E-03
55	GO:0009641: shade avoidance	2.14E-03
56	GO:0048364: root development	2.19E-03
57	GO:0006979: response to oxidative stress	2.22E-03
58	GO:0048229: gametophyte development	2.36E-03
59	GO:0010015: root morphogenesis	2.36E-03
60	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	2.58E-03
61	GO:0010075: regulation of meristem growth	2.82E-03
62	GO:0006626: protein targeting to mitochondrion	2.82E-03
63	GO:0009934: regulation of meristem structural organization	3.06E-03
64	GO:0009933: meristem structural organization	3.06E-03
65	GO:0015031: protein transport	3.15E-03
66	GO:0090351: seedling development	3.30E-03
67	GO:0009969: xyloglucan biosynthetic process	3.30E-03
68	GO:0019853: L-ascorbic acid biosynthetic process	3.30E-03
69	GO:0015992: proton transport	4.35E-03
70	GO:0007005: mitochondrion organization	4.63E-03
71	GO:0009306: protein secretion	5.20E-03
72	GO:0051028: mRNA transport	5.50E-03
73	GO:0008033: tRNA processing	5.80E-03
74	GO:0000413: protein peptidyl-prolyl isomerization	5.80E-03
75	GO:0009556: microsporogenesis	6.74E-03
76	GO:0009851: auxin biosynthetic process	6.74E-03
77	GO:0048825: cotyledon development	6.74E-03
78	GO:0010193: response to ozone	7.07E-03
79	GO:0006891: intra-Golgi vesicle-mediated transport	7.07E-03
80	GO:0009627: systemic acquired resistance	9.87E-03
81	GO:0006888: ER to Golgi vesicle-mediated transport	1.02E-02
82	GO:0016049: cell growth	1.06E-02
83	GO:0009817: defense response to fungus, incompatible interaction	1.10E-02
84	GO:0010311: lateral root formation	1.14E-02
85	GO:0009832: plant-type cell wall biogenesis	1.14E-02
86	GO:0006499: N-terminal protein myristoylation	1.18E-02
87	GO:0010043: response to zinc ion	1.22E-02
88	GO:0009631: cold acclimation	1.22E-02
89	GO:0009408: response to heat	1.31E-02
90	GO:0006631: fatty acid metabolic process	1.47E-02
91	GO:0009926: auxin polar transport	1.56E-02
92	GO:0008283: cell proliferation	1.56E-02
93	GO:0000209: protein polyubiquitination	1.60E-02
94	GO:0009644: response to high light intensity	1.65E-02
95	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.78E-02
96	GO:0006812: cation transport	1.83E-02
97	GO:0006486: protein glycosylation	1.92E-02
98	GO:0009736: cytokinin-activated signaling pathway	1.92E-02
99	GO:0048367: shoot system development	2.22E-02
100	GO:0048316: seed development	2.22E-02
101	GO:0009553: embryo sac development	2.42E-02
102	GO:0009790: embryo development	3.24E-02
103	GO:0006414: translational elongation	3.47E-02
104	GO:0006413: translational initiation	3.47E-02

Rank	GO Term	Adjusted P value
1	GO:0008752: FMN reductase activity	0.00E+00
2	GO:0004615: phosphomannomutase activity	0.00E+00
3	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	1.59E-14
5	GO:0003756: protein disulfide isomerase activity	8.13E-12
6	GO:0008233: peptidase activity	1.77E-11
7	GO:0051082: unfolded protein binding	1.41E-08
8	GO:0036402: proteasome-activating ATPase activity	4.69E-08
9	GO:0017025: TBP-class protein binding	2.81E-06
10	GO:0004656: procollagen-proline 4-dioxygenase activity	1.76E-05
11	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	6.91E-05
12	GO:1990381: ubiquitin-specific protease binding	6.91E-05
13	GO:0003746: translation elongation factor activity	7.80E-05
14	GO:0016887: ATPase activity	8.45E-05
15	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	1.66E-04
16	GO:0010326: methionine-oxo-acid transaminase activity	1.66E-04
17	GO:0031418: L-ascorbic acid binding	1.94E-04
18	GO:0030246: carbohydrate binding	2.05E-04
19	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	2.81E-04
20	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	2.81E-04
21	GO:0005525: GTP binding	3.01E-04
22	GO:0005509: calcium ion binding	3.81E-04
23	GO:0009678: hydrogen-translocating pyrophosphatase activity	4.06E-04
24	GO:0010181: FMN binding	4.23E-04
25	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	5.42E-04
26	GO:0015368: calcium:cation antiporter activity	5.42E-04
27	GO:0015369: calcium:proton antiporter activity	5.42E-04
28	GO:0008195: phosphatidate phosphatase activity	9.99E-04
29	GO:0102391: decanoate--CoA ligase activity	9.99E-04
30	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.12E-03
31	GO:0004467: long-chain fatty acid-CoA ligase activity	1.17E-03
32	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.17E-03
33	GO:0004427: inorganic diphosphatase activity	1.17E-03
34	GO:0015491: cation:cation antiporter activity	1.34E-03
35	GO:0008135: translation factor activity, RNA binding	1.53E-03
36	GO:0008417: fucosyltransferase activity	1.73E-03
37	GO:0000166: nucleotide binding	4.28E-03
38	GO:0016853: isomerase activity	6.42E-03
39	GO:0008483: transaminase activity	8.42E-03
40	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.10E-02
41	GO:0003924: GTPase activity	1.31E-02
42	GO:0051539: 4 iron, 4 sulfur cluster binding	1.43E-02
43	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.74E-02
44	GO:0051287: NAD binding	1.78E-02
45	GO:0022857: transmembrane transporter activity	2.37E-02
46	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.96E-02
47	GO:0016829: lyase activity	3.07E-02
48	GO:0030170: pyridoxal phosphate binding	3.12E-02
49	GO:0008565: protein transporter activity	3.30E-02
50	GO:0003743: translation initiation factor activity	4.07E-02
51	GO:0005506: iron ion binding	4.62E-02
52	GO:0005515: protein binding	4.83E-02
53	GO:0008168: methyltransferase activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0000502: proteasome complex	7.81E-23
3	GO:0005788: endoplasmic reticulum lumen	5.36E-19
4	GO:0005783: endoplasmic reticulum	2.22E-16
5	GO:0005839: proteasome core complex	1.59E-14
6	GO:0005774: vacuolar membrane	2.19E-11
7	GO:0005829: cytosol	2.44E-08
8	GO:0031597: cytosolic proteasome complex	8.35E-08
9	GO:0031595: nuclear proteasome complex	1.38E-07
10	GO:0019773: proteasome core complex, alpha-subunit complex	3.17E-07
11	GO:0008540: proteasome regulatory particle, base subcomplex	6.27E-07
12	GO:0008541: proteasome regulatory particle, lid subcomplex	1.11E-06
13	GO:0005773: vacuole	4.17E-06
14	GO:0005789: endoplasmic reticulum membrane	2.65E-05
15	GO:0005886: plasma membrane	4.04E-05
16	GO:0000836: Hrd1p ubiquitin ligase complex	6.91E-05
17	GO:0044322: endoplasmic reticulum quality control compartment	6.91E-05
18	GO:0009507: chloroplast	1.42E-04
19	GO:0046861: glyoxysomal membrane	2.81E-04
20	GO:0005838: proteasome regulatory particle	2.81E-04
21	GO:0005794: Golgi apparatus	3.57E-04
22	GO:0036513: Derlin-1 retrotranslocation complex	4.06E-04
23	GO:0009331: glycerol-3-phosphate dehydrogenase complex	4.06E-04
24	GO:0005737: cytoplasm	4.62E-04
25	GO:0009506: plasmodesma	4.99E-04
26	GO:0022626: cytosolic ribosome	7.12E-04
27	GO:0005851: eukaryotic translation initiation factor 2B complex	8.40E-04
28	GO:0030127: COPII vesicle coat	8.40E-04
29	GO:0030904: retromer complex	8.40E-04
30	GO:0048046: apoplast	1.11E-03
31	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.17E-03
32	GO:0016020: membrane	1.18E-03
33	GO:0000326: protein storage vacuole	1.53E-03
34	GO:0009514: glyoxysome	1.53E-03
35	GO:0005802: trans-Golgi network	1.54E-03
36	GO:0030176: integral component of endoplasmic reticulum membrane	3.30E-03
37	GO:0005623: cell	3.45E-03
38	GO:0005769: early endosome	3.56E-03
39	GO:0005758: mitochondrial intermembrane space	3.81E-03
40	GO:0009705: plant-type vacuole membrane	4.62E-03
41	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.82E-03
42	GO:0032580: Golgi cisterna membrane	8.08E-03
43	GO:0005768: endosome	9.17E-03
44	GO:0005643: nuclear pore	1.10E-02
45	GO:0005819: spindle	1.38E-02
46	GO:0009505: plant-type cell wall	1.40E-02
47	GO:0031902: late endosome membrane	1.47E-02
48	GO:0000139: Golgi membrane	1.54E-02
49	GO:0005635: nuclear envelope	2.02E-02
50	GO:0005834: heterotrimeric G-protein complex	2.27E-02
51	GO:0009524: phragmoplast	3.01E-02
52	GO:0005622: intracellular	4.12E-02
53	GO:0022627: cytosolic small ribosomal subunit	4.45E-02
54	GO:0005840: ribosome	4.91E-02