co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071000: response to magnetism	0.00E+00
2	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
3	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
4	GO:0042817: pyridoxal metabolic process	0.00E+00
5	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
6	GO:0098586: cellular response to virus	0.00E+00
7	GO:0009583: detection of light stimulus	0.00E+00
8	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
9	GO:0009658: chloroplast organization	2.93E-09
10	GO:0080005: photosystem stoichiometry adjustment	1.55E-06
11	GO:0016120: carotene biosynthetic process	3.97E-05
12	GO:0010190: cytochrome b6f complex assembly	5.89E-05
13	GO:0016117: carotenoid biosynthetic process	8.36E-05
14	GO:0048564: photosystem I assembly	1.40E-04
15	GO:0071806: protein transmembrane transport	1.80E-04
16	GO:0072387: flavin adenine dinucleotide metabolic process	1.80E-04
17	GO:0042371: vitamin K biosynthetic process	1.80E-04
18	GO:0071454: cellular response to anoxia	1.80E-04
19	GO:0071461: cellular response to redox state	1.80E-04
20	GO:0048438: floral whorl development	1.80E-04
21	GO:0010362: negative regulation of anion channel activity by blue light	1.80E-04
22	GO:0071266: 'de novo' L-methionine biosynthetic process	1.80E-04
23	GO:0019343: cysteine biosynthetic process via cystathionine	1.80E-04
24	GO:0019346: transsulfuration	1.80E-04
25	GO:1900426: positive regulation of defense response to bacterium	2.55E-04
26	GO:0009638: phototropism	2.55E-04
27	GO:0015995: chlorophyll biosynthetic process	3.01E-04
28	GO:0018298: protein-chromophore linkage	3.44E-04
29	GO:0048314: embryo sac morphogenesis	4.05E-04
30	GO:0010617: circadian regulation of calcium ion oscillation	4.05E-04
31	GO:0050688: regulation of defense response to virus	4.05E-04
32	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.05E-04
33	GO:0099402: plant organ development	4.05E-04
34	GO:0080183: response to photooxidative stress	4.05E-04
35	GO:0080153: negative regulation of reductive pentose-phosphate cycle	4.05E-04
36	GO:0080185: effector dependent induction by symbiont of host immune response	4.05E-04
37	GO:0010343: singlet oxygen-mediated programmed cell death	4.05E-04
38	GO:0006739: NADP metabolic process	4.05E-04
39	GO:1901529: positive regulation of anion channel activity	4.05E-04
40	GO:0046741: transport of virus in host, tissue to tissue	4.05E-04
41	GO:0010207: photosystem II assembly	5.13E-04
42	GO:0055114: oxidation-reduction process	6.05E-04
43	GO:0006696: ergosterol biosynthetic process	6.61E-04
44	GO:1902448: positive regulation of shade avoidance	6.61E-04
45	GO:0006013: mannose metabolic process	6.61E-04
46	GO:1901672: positive regulation of systemic acquired resistance	6.61E-04
47	GO:0007017: microtubule-based process	7.77E-04
48	GO:0008615: pyridoxine biosynthetic process	9.45E-04
49	GO:1901332: negative regulation of lateral root development	9.45E-04
50	GO:0050482: arachidonic acid secretion	9.45E-04
51	GO:0043572: plastid fission	9.45E-04
52	GO:2001141: regulation of RNA biosynthetic process	9.45E-04
53	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.45E-04
54	GO:0046653: tetrahydrofolate metabolic process	9.45E-04
55	GO:0090307: mitotic spindle assembly	9.45E-04
56	GO:0033014: tetrapyrrole biosynthetic process	9.45E-04
57	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	9.45E-04
58	GO:0006734: NADH metabolic process	1.25E-03
59	GO:1902347: response to strigolactone	1.25E-03
60	GO:0009902: chloroplast relocation	1.25E-03
61	GO:0015743: malate transport	1.25E-03
62	GO:0042274: ribosomal small subunit biogenesis	1.25E-03
63	GO:0009765: photosynthesis, light harvesting	1.25E-03
64	GO:0031122: cytoplasmic microtubule organization	1.25E-03
65	GO:0010118: stomatal movement	1.27E-03
66	GO:0010117: photoprotection	1.59E-03
67	GO:0046283: anthocyanin-containing compound metabolic process	1.59E-03
68	GO:0035434: copper ion transmembrane transport	1.59E-03
69	GO:0016123: xanthophyll biosynthetic process	1.59E-03
70	GO:0009616: virus induced gene silencing	1.59E-03
71	GO:1901371: regulation of leaf morphogenesis	1.96E-03
72	GO:0060918: auxin transport	1.96E-03
73	GO:0010076: maintenance of floral meristem identity	2.35E-03
74	GO:0010189: vitamin E biosynthetic process	2.35E-03
75	GO:0010019: chloroplast-nucleus signaling pathway	2.35E-03
76	GO:0010310: regulation of hydrogen peroxide metabolic process	2.35E-03
77	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.35E-03
78	GO:0051510: regulation of unidimensional cell growth	2.77E-03
79	GO:1900056: negative regulation of leaf senescence	2.77E-03
80	GO:0010050: vegetative phase change	2.77E-03
81	GO:0009396: folic acid-containing compound biosynthetic process	2.77E-03
82	GO:0007623: circadian rhythm	2.90E-03
83	GO:0006605: protein targeting	3.21E-03
84	GO:0009704: de-etiolation	3.21E-03
85	GO:0006644: phospholipid metabolic process	3.21E-03
86	GO:0042255: ribosome assembly	3.21E-03
87	GO:0006353: DNA-templated transcription, termination	3.21E-03
88	GO:0009910: negative regulation of flower development	3.63E-03
89	GO:0032544: plastid translation	3.67E-03
90	GO:0044030: regulation of DNA methylation	3.67E-03
91	GO:0071482: cellular response to light stimulus	3.67E-03
92	GO:0022900: electron transport chain	3.67E-03
93	GO:0009657: plastid organization	3.67E-03
94	GO:0009637: response to blue light	3.98E-03
95	GO:0009853: photorespiration	3.98E-03
96	GO:0006783: heme biosynthetic process	4.15E-03
97	GO:0000373: Group II intron splicing	4.15E-03
98	GO:0006779: porphyrin-containing compound biosynthetic process	4.65E-03
99	GO:0035999: tetrahydrofolate interconversion	4.65E-03
100	GO:0010380: regulation of chlorophyll biosynthetic process	4.65E-03
101	GO:0010267: production of ta-siRNAs involved in RNA interference	4.65E-03
102	GO:0010114: response to red light	5.12E-03
103	GO:0009744: response to sucrose	5.12E-03
104	GO:0045036: protein targeting to chloroplast	5.18E-03
105	GO:0009644: response to high light intensity	5.54E-03
106	GO:0043085: positive regulation of catalytic activity	5.72E-03
107	GO:0006352: DNA-templated transcription, initiation	5.72E-03
108	GO:0010582: floral meristem determinacy	6.28E-03
109	GO:0010075: regulation of meristem growth	6.86E-03
110	GO:0009725: response to hormone	6.86E-03
111	GO:0009767: photosynthetic electron transport chain	6.86E-03
112	GO:0009785: blue light signaling pathway	6.86E-03
113	GO:0046777: protein autophosphorylation	7.22E-03
114	GO:0009266: response to temperature stimulus	7.46E-03
115	GO:0034605: cellular response to heat	7.46E-03
116	GO:0010020: chloroplast fission	7.46E-03
117	GO:0019253: reductive pentose-phosphate cycle	7.46E-03
118	GO:0006417: regulation of translation	7.64E-03
119	GO:0090351: seedling development	8.08E-03
120	GO:0010025: wax biosynthetic process	8.71E-03
121	GO:2000377: regulation of reactive oxygen species metabolic process	9.37E-03
122	GO:0006825: copper ion transport	1.00E-02
123	GO:0051302: regulation of cell division	1.00E-02
124	GO:0051321: meiotic cell cycle	1.07E-02
125	GO:0006730: one-carbon metabolic process	1.14E-02
126	GO:0016226: iron-sulfur cluster assembly	1.14E-02
127	GO:0006817: phosphate ion transport	1.29E-02
128	GO:0070417: cellular response to cold	1.37E-02
129	GO:0008033: tRNA processing	1.44E-02
130	GO:0006662: glycerol ether metabolic process	1.52E-02
131	GO:0006814: sodium ion transport	1.60E-02
132	GO:0042752: regulation of circadian rhythm	1.60E-02
133	GO:0009646: response to absence of light	1.60E-02
134	GO:0008654: phospholipid biosynthetic process	1.68E-02
135	GO:0009791: post-embryonic development	1.68E-02
136	GO:0000302: response to reactive oxygen species	1.77E-02
137	GO:0032502: developmental process	1.85E-02
138	GO:0030163: protein catabolic process	1.94E-02
139	GO:0010286: heat acclimation	2.11E-02
140	GO:0051607: defense response to virus	2.20E-02
141	GO:0016126: sterol biosynthetic process	2.30E-02
142	GO:0009816: defense response to bacterium, incompatible interaction	2.39E-02
143	GO:0006950: response to stress	2.58E-02
144	GO:0000160: phosphorelay signal transduction system	2.87E-02
145	GO:0010218: response to far red light	2.97E-02
146	GO:0006811: ion transport	2.97E-02
147	GO:0010043: response to zinc ion	3.08E-02
148	GO:0007568: aging	3.08E-02
149	GO:0000724: double-strand break repair via homologous recombination	3.18E-02
150	GO:0034599: cellular response to oxidative stress	3.39E-02
151	GO:0015979: photosynthesis	3.73E-02
152	GO:0009640: photomorphogenesis	3.93E-02
153	GO:0006260: DNA replication	4.50E-02
154	GO:0000165: MAPK cascade	4.50E-02
155	GO:0031347: regulation of defense response	4.50E-02
156	GO:0032259: methylation	4.61E-02
157	GO:0042538: hyperosmotic salinity response	4.62E-02
158	GO:0006364: rRNA processing	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0045436: lycopene beta cyclase activity	0.00E+00
5	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0009882: blue light photoreceptor activity	1.33E-05
9	GO:0016851: magnesium chelatase activity	1.33E-05
10	GO:0048038: quinone binding	1.44E-04
11	GO:0052857: NADPHX epimerase activity	1.80E-04
12	GO:0030941: chloroplast targeting sequence binding	1.80E-04
13	GO:0004123: cystathionine gamma-lyase activity	1.80E-04
14	GO:0046906: tetrapyrrole binding	1.80E-04
15	GO:0004733: pyridoxamine-phosphate oxidase activity	1.80E-04
16	GO:0004325: ferrochelatase activity	1.80E-04
17	GO:0004121: cystathionine beta-lyase activity	1.80E-04
18	GO:0051996: squalene synthase activity	1.80E-04
19	GO:0052856: NADHX epimerase activity	1.80E-04
20	GO:0071949: FAD binding	2.13E-04
21	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.05E-04
22	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	4.05E-04
23	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	4.05E-04
24	GO:0004046: aminoacylase activity	4.05E-04
25	GO:0015367: oxoglutarate:malate antiporter activity	4.05E-04
26	GO:0016491: oxidoreductase activity	5.68E-04
27	GO:0003962: cystathionine gamma-synthase activity	6.61E-04
28	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.61E-04
29	GO:0000900: translation repressor activity, nucleic acid binding	6.61E-04
30	GO:0004180: carboxypeptidase activity	6.61E-04
31	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.61E-04
32	GO:0032947: protein complex scaffold	6.61E-04
33	GO:0004848: ureidoglycolate hydrolase activity	6.61E-04
34	GO:0000254: C-4 methylsterol oxidase activity	9.45E-04
35	GO:0003727: single-stranded RNA binding	1.09E-03
36	GO:0001053: plastid sigma factor activity	1.25E-03
37	GO:0051861: glycolipid binding	1.25E-03
38	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.25E-03
39	GO:0016987: sigma factor activity	1.25E-03
40	GO:0043015: gamma-tubulin binding	1.25E-03
41	GO:0010181: FMN binding	1.47E-03
42	GO:0004623: phospholipase A2 activity	1.59E-03
43	GO:0051011: microtubule minus-end binding	1.59E-03
44	GO:0004605: phosphatidate cytidylyltransferase activity	1.96E-03
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.99E-03
46	GO:0004559: alpha-mannosidase activity	2.35E-03
47	GO:0015631: tubulin binding	2.35E-03
48	GO:0019899: enzyme binding	2.77E-03
49	GO:0005375: copper ion transmembrane transporter activity	3.67E-03
50	GO:0005506: iron ion binding	4.34E-03
51	GO:0051537: 2 iron, 2 sulfur cluster binding	5.54E-03
52	GO:0005315: inorganic phosphate transmembrane transporter activity	6.86E-03
53	GO:0031072: heat shock protein binding	6.86E-03
54	GO:0000155: phosphorelay sensor kinase activity	6.86E-03
55	GO:0003777: microtubule motor activity	7.64E-03
56	GO:0003887: DNA-directed DNA polymerase activity	8.71E-03
57	GO:0051536: iron-sulfur cluster binding	9.37E-03
58	GO:0004176: ATP-dependent peptidase activity	1.07E-02
59	GO:0022891: substrate-specific transmembrane transporter activity	1.22E-02
60	GO:0019843: rRNA binding	1.23E-02
61	GO:0047134: protein-disulfide reductase activity	1.37E-02
62	GO:0008080: N-acetyltransferase activity	1.52E-02
63	GO:0004791: thioredoxin-disulfide reductase activity	1.60E-02
64	GO:0004872: receptor activity	1.68E-02
65	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.94E-02
66	GO:0005200: structural constituent of cytoskeleton	2.11E-02
67	GO:0008483: transaminase activity	2.11E-02
68	GO:0008237: metallopeptidase activity	2.11E-02
69	GO:0042802: identical protein binding	2.17E-02
70	GO:0016168: chlorophyll binding	2.39E-02
71	GO:0008168: methyltransferase activity	2.54E-02
72	GO:0008236: serine-type peptidase activity	2.68E-02
73	GO:0004222: metalloendopeptidase activity	2.97E-02
74	GO:0008233: peptidase activity	3.22E-02
75	GO:0043621: protein self-association	4.16E-02
76	GO:0015293: symporter activity	4.27E-02
77	GO:0005198: structural molecule activity	4.27E-02
78	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.86E-02
79	GO:0003690: double-stranded DNA binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.60E-25
2	GO:0009535: chloroplast thylakoid membrane	8.40E-11
3	GO:0031969: chloroplast membrane	2.30E-06
4	GO:0030286: dynein complex	2.45E-05
5	GO:0009706: chloroplast inner membrane	1.97E-04
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.13E-04
7	GO:0009570: chloroplast stroma	3.34E-04
8	GO:0008274: gamma-tubulin ring complex	4.05E-04
9	GO:0005875: microtubule associated complex	6.38E-04
10	GO:0016605: PML body	6.61E-04
11	GO:0009528: plastid inner membrane	6.61E-04
12	GO:0010007: magnesium chelatase complex	6.61E-04
13	GO:0042651: thylakoid membrane	7.77E-04
14	GO:0000923: equatorial microtubule organizing center	9.45E-04
15	GO:0055035: plastid thylakoid membrane	1.59E-03
16	GO:0005655: nucleolar ribonuclease P complex	2.35E-03
17	GO:0031359: integral component of chloroplast outer membrane	2.77E-03
18	GO:0009707: chloroplast outer membrane	3.15E-03
19	GO:0009941: chloroplast envelope	3.24E-03
20	GO:0046930: pore complex	3.67E-03
21	GO:0000922: spindle pole	4.15E-03
22	GO:0016604: nuclear body	4.65E-03
23	GO:0031977: thylakoid lumen	4.72E-03
24	GO:0048471: perinuclear region of cytoplasm	5.72E-03
25	GO:0031966: mitochondrial membrane	6.43E-03
26	GO:0009508: plastid chromosome	6.86E-03
27	GO:0043234: protein complex	8.71E-03
28	GO:0045271: respiratory chain complex I	1.00E-02
29	GO:0009543: chloroplast thylakoid lumen	1.23E-02
30	GO:0009523: photosystem II	1.68E-02
31	GO:0009295: nucleoid	2.11E-02
32	GO:0009536: plastid	2.17E-02
33	GO:0009534: chloroplast thylakoid	2.85E-02