co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009439: cyanate metabolic process	0.00E+00
2	GO:0009440: cyanate catabolic process	0.00E+00
3	GO:0010202: response to low fluence red light stimulus	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0046294: formaldehyde catabolic process	0.00E+00
6	GO:0017012: protein-phytochromobilin linkage	0.00E+00
7	GO:0010336: gibberellic acid homeostasis	0.00E+00
8	GO:0009903: chloroplast avoidance movement	2.12E-05
9	GO:0006835: dicarboxylic acid transport	7.75E-05
10	GO:1902265: abscisic acid homeostasis	7.75E-05
11	GO:0010617: circadian regulation of calcium ion oscillation	1.85E-04
12	GO:0007154: cell communication	1.85E-04
13	GO:0080183: response to photooxidative stress	1.85E-04
14	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	1.85E-04
15	GO:0043100: pyrimidine nucleobase salvage	1.85E-04
16	GO:0010343: singlet oxygen-mediated programmed cell death	1.85E-04
17	GO:0006898: receptor-mediated endocytosis	1.85E-04
18	GO:1901562: response to paraquat	3.11E-04
19	GO:0044375: regulation of peroxisome size	3.11E-04
20	GO:0031022: nuclear migration along microfilament	3.11E-04
21	GO:0009113: purine nucleobase biosynthetic process	4.49E-04
22	GO:0010371: regulation of gibberellin biosynthetic process	4.49E-04
23	GO:0009584: detection of visible light	4.49E-04
24	GO:0010148: transpiration	4.49E-04
25	GO:0071483: cellular response to blue light	5.98E-04
26	GO:0009902: chloroplast relocation	5.98E-04
27	GO:0034613: cellular protein localization	5.98E-04
28	GO:0009687: abscisic acid metabolic process	5.98E-04
29	GO:0015743: malate transport	5.98E-04
30	GO:0009649: entrainment of circadian clock	5.98E-04
31	GO:0009904: chloroplast accumulation movement	7.57E-04
32	GO:0010236: plastoquinone biosynthetic process	7.57E-04
33	GO:0000304: response to singlet oxygen	7.57E-04
34	GO:0010029: regulation of seed germination	8.43E-04
35	GO:0006796: phosphate-containing compound metabolic process	9.24E-04
36	GO:0010304: PSII associated light-harvesting complex II catabolic process	9.24E-04
37	GO:0010189: vitamin E biosynthetic process	1.10E-03
38	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.10E-03
39	GO:0050790: regulation of catalytic activity	1.29E-03
40	GO:0009637: response to blue light	1.29E-03
41	GO:0010374: stomatal complex development	1.29E-03
42	GO:0010161: red light signaling pathway	1.29E-03
43	GO:0009396: folic acid-containing compound biosynthetic process	1.29E-03
44	GO:0009231: riboflavin biosynthetic process	1.48E-03
45	GO:0006102: isocitrate metabolic process	1.48E-03
46	GO:0016559: peroxisome fission	1.48E-03
47	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.48E-03
48	GO:0030091: protein repair	1.48E-03
49	GO:0009640: photomorphogenesis	1.65E-03
50	GO:0015996: chlorophyll catabolic process	1.69E-03
51	GO:0034765: regulation of ion transmembrane transport	1.91E-03
52	GO:0015780: nucleotide-sugar transport	1.91E-03
53	GO:0051453: regulation of intracellular pH	2.14E-03
54	GO:0009638: phototropism	2.14E-03
55	GO:0035999: tetrahydrofolate interconversion	2.14E-03
56	GO:0009098: leucine biosynthetic process	2.14E-03
57	GO:0009585: red, far-red light phototransduction	2.21E-03
58	GO:0051603: proteolysis involved in cellular protein catabolic process	2.28E-03
59	GO:0006325: chromatin organization	2.37E-03
60	GO:0072593: reactive oxygen species metabolic process	2.61E-03
61	GO:0008285: negative regulation of cell proliferation	2.61E-03
62	GO:0030048: actin filament-based movement	3.12E-03
63	GO:2000028: regulation of photoperiodism, flowering	3.12E-03
64	GO:0050826: response to freezing	3.12E-03
65	GO:0009767: photosynthetic electron transport chain	3.12E-03
66	GO:0007015: actin filament organization	3.38E-03
67	GO:0009266: response to temperature stimulus	3.38E-03
68	GO:0007031: peroxisome organization	3.66E-03
69	GO:0010073: meristem maintenance	4.52E-03
70	GO:0008299: isoprenoid biosynthetic process	4.52E-03
71	GO:0019915: lipid storage	4.82E-03
72	GO:0046686: response to cadmium ion	5.42E-03
73	GO:0010227: floral organ abscission	5.45E-03
74	GO:0006012: galactose metabolic process	5.45E-03
75	GO:0009693: ethylene biosynthetic process	5.45E-03
76	GO:0010228: vegetative to reproductive phase transition of meristem	5.62E-03
77	GO:0042391: regulation of membrane potential	6.44E-03
78	GO:0006520: cellular amino acid metabolic process	6.78E-03
79	GO:0048544: recognition of pollen	7.13E-03
80	GO:0006814: sodium ion transport	7.13E-03
81	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	7.85E-03
82	GO:0019761: glucosinolate biosynthetic process	8.22E-03
83	GO:0009630: gravitropism	8.22E-03
84	GO:1901657: glycosyl compound metabolic process	8.59E-03
85	GO:0006464: cellular protein modification process	8.97E-03
86	GO:0071805: potassium ion transmembrane transport	9.36E-03
87	GO:0042128: nitrate assimilation	1.10E-02
88	GO:0015979: photosynthesis	1.18E-02
89	GO:0018298: protein-chromophore linkage	1.22E-02
90	GO:0009813: flavonoid biosynthetic process	1.27E-02
91	GO:0010218: response to far red light	1.31E-02
92	GO:0006811: ion transport	1.31E-02
93	GO:0010043: response to zinc ion	1.36E-02
94	GO:0007568: aging	1.36E-02
95	GO:0009867: jasmonic acid mediated signaling pathway	1.45E-02
96	GO:0034599: cellular response to oxidative stress	1.49E-02
97	GO:0006099: tricarboxylic acid cycle	1.49E-02
98	GO:0006508: proteolysis	1.51E-02
99	GO:0008643: carbohydrate transport	1.83E-02
100	GO:0009409: response to cold	1.87E-02
101	GO:0031347: regulation of defense response	1.98E-02
102	GO:0005975: carbohydrate metabolic process	2.16E-02
103	GO:0006857: oligopeptide transport	2.25E-02
104	GO:0009909: regulation of flower development	2.30E-02
105	GO:0042545: cell wall modification	2.69E-02
106	GO:0035556: intracellular signal transduction	2.86E-02
107	GO:0009058: biosynthetic process	3.35E-02
108	GO:0007623: circadian rhythm	4.06E-02
109	GO:0010150: leaf senescence	4.06E-02
110	GO:0045490: pectin catabolic process	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
2	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
3	GO:0008824: cyanate hydratase activity	0.00E+00
4	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
5	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
6	GO:0031517: red light photoreceptor activity	0.00E+00
7	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
8	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
9	GO:0042802: identical protein binding	2.77E-07
10	GO:1990841: promoter-specific chromatin binding	7.75E-05
11	GO:0016783: sulfurtransferase activity	7.75E-05
12	GO:0004328: formamidase activity	7.75E-05
13	GO:0031516: far-red light photoreceptor activity	7.75E-05
14	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	7.75E-05
15	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	7.75E-05
16	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	7.75E-05
17	GO:0046480: galactolipid galactosyltransferase activity	7.75E-05
18	GO:0080079: cellobiose glucosidase activity	7.75E-05
19	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	7.75E-05
20	GO:0004329: formate-tetrahydrofolate ligase activity	1.85E-04
21	GO:0004450: isocitrate dehydrogenase (NADP+) activity	1.85E-04
22	GO:0009883: red or far-red light photoreceptor activity	1.85E-04
23	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	1.85E-04
24	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	1.85E-04
25	GO:0050347: trans-octaprenyltranstransferase activity	1.85E-04
26	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	1.85E-04
27	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.85E-04
28	GO:0004046: aminoacylase activity	1.85E-04
29	GO:0008020: G-protein coupled photoreceptor activity	3.11E-04
30	GO:0004557: alpha-galactosidase activity	3.11E-04
31	GO:0003861: 3-isopropylmalate dehydratase activity	3.11E-04
32	GO:0003935: GTP cyclohydrolase II activity	3.11E-04
33	GO:0004792: thiosulfate sulfurtransferase activity	4.49E-04
34	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	4.49E-04
35	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	9.24E-04
36	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	9.24E-04
37	GO:0000293: ferric-chelate reductase activity	9.24E-04
38	GO:0005242: inward rectifier potassium channel activity	1.10E-03
39	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.29E-03
40	GO:0004427: inorganic diphosphatase activity	1.29E-03
41	GO:0015140: malate transmembrane transporter activity	1.29E-03
42	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.48E-03
43	GO:0004034: aldose 1-epimerase activity	1.48E-03
44	GO:0004673: protein histidine kinase activity	2.37E-03
45	GO:0008378: galactosyltransferase activity	2.86E-03
46	GO:0000155: phosphorelay sensor kinase activity	3.12E-03
47	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.38E-03
48	GO:0004176: ATP-dependent peptidase activity	4.82E-03
49	GO:0005249: voltage-gated potassium channel activity	6.44E-03
50	GO:0030551: cyclic nucleotide binding	6.44E-03
51	GO:0016853: isomerase activity	7.13E-03
52	GO:0000287: magnesium ion binding	8.15E-03
53	GO:0004518: nuclease activity	8.22E-03
54	GO:0004197: cysteine-type endopeptidase activity	8.22E-03
55	GO:0008483: transaminase activity	9.36E-03
56	GO:0008237: metallopeptidase activity	9.36E-03
57	GO:0030247: polysaccharide binding	1.14E-02
58	GO:0008236: serine-type peptidase activity	1.18E-02
59	GO:0004871: signal transducer activity	1.29E-02
60	GO:0004222: metalloendopeptidase activity	1.31E-02
61	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.45E-02
62	GO:0008422: beta-glucosidase activity	1.54E-02
63	GO:0051539: 4 iron, 4 sulfur cluster binding	1.59E-02
64	GO:0004185: serine-type carboxypeptidase activity	1.73E-02
65	GO:0051287: NAD binding	1.98E-02
66	GO:0004672: protein kinase activity	2.07E-02
67	GO:0045330: aspartyl esterase activity	2.30E-02
68	GO:0008234: cysteine-type peptidase activity	2.30E-02
69	GO:0030599: pectinesterase activity	2.64E-02
70	GO:0022857: transmembrane transporter activity	2.64E-02
71	GO:0016829: lyase activity	3.42E-02
72	GO:0030170: pyridoxal phosphate binding	3.48E-02
73	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.57E-02
74	GO:0030246: carbohydrate binding	3.64E-02
75	GO:0046910: pectinesterase inhibitor activity	3.86E-02
76	GO:0015297: antiporter activity	3.93E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0009507: chloroplast	6.16E-05
3	GO:0005773: vacuole	2.44E-04
4	GO:0009526: plastid envelope	5.98E-04
5	GO:0009536: plastid	8.33E-04
6	GO:0031359: integral component of chloroplast outer membrane	1.29E-03
7	GO:0031982: vesicle	1.48E-03
8	GO:0031969: chloroplast membrane	1.54E-03
9	GO:0005779: integral component of peroxisomal membrane	1.69E-03
10	GO:0016604: nuclear body	2.14E-03
11	GO:0005764: lysosome	3.38E-03
12	GO:0005623: cell	4.00E-03
13	GO:0042651: thylakoid membrane	4.52E-03
14	GO:0005777: peroxisome	6.19E-03
15	GO:0071944: cell periphery	8.59E-03
16	GO:0005778: peroxisomal membrane	9.36E-03
17	GO:0019005: SCF ubiquitin ligase complex	1.22E-02
18	GO:0009707: chloroplast outer membrane	1.22E-02
19	GO:0009505: plant-type cell wall	1.69E-02
20	GO:0005774: vacuolar membrane	1.81E-02
21	GO:0016607: nuclear speck	2.47E-02
22	GO:0005747: mitochondrial respiratory chain complex I	2.47E-02
23	GO:0005834: heterotrimeric G-protein complex	2.52E-02
24	GO:0010287: plastoglobule	3.11E-02
25	GO:0005829: cytosol	3.18E-02
26	GO:0005759: mitochondrial matrix	3.80E-02
27	GO:0005615: extracellular space	4.40E-02
28	GO:0046658: anchored component of plasma membrane	4.95E-02