Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G46910

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:0000023: maltose metabolic process0.00E+00
3GO:1905421: regulation of plant organ morphogenesis0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0019323: pentose catabolic process0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
9GO:0016553: base conversion or substitution editing0.00E+00
10GO:0090627: plant epidermal cell differentiation0.00E+00
11GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
12GO:0015717: triose phosphate transport0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0018023: peptidyl-lysine trimethylation0.00E+00
15GO:0015979: photosynthesis2.56E-14
16GO:0009735: response to cytokinin7.39E-12
17GO:0032544: plastid translation3.18E-11
18GO:0006412: translation1.92E-09
19GO:0009773: photosynthetic electron transport in photosystem I3.66E-08
20GO:0042254: ribosome biogenesis5.90E-08
21GO:0019464: glycine decarboxylation via glycine cleavage system1.05E-06
22GO:0005983: starch catabolic process3.09E-06
23GO:0009409: response to cold5.52E-06
24GO:0030388: fructose 1,6-bisphosphate metabolic process7.89E-06
25GO:0010027: thylakoid membrane organization1.03E-05
26GO:0015995: chlorophyll biosynthetic process1.55E-05
27GO:0006000: fructose metabolic process2.73E-05
28GO:0009658: chloroplast organization5.76E-05
29GO:0010021: amylopectin biosynthetic process1.04E-04
30GO:0032543: mitochondrial translation1.61E-04
31GO:0010190: cytochrome b6f complex assembly2.30E-04
32GO:0006418: tRNA aminoacylation for protein translation2.56E-04
33GO:0061077: chaperone-mediated protein folding2.92E-04
34GO:0010196: nonphotochemical quenching3.99E-04
35GO:0009645: response to low light intensity stimulus3.99E-04
36GO:0080093: regulation of photorespiration4.21E-04
37GO:0031998: regulation of fatty acid beta-oxidation4.21E-04
38GO:0006431: methionyl-tRNA aminoacylation4.21E-04
39GO:0000025: maltose catabolic process4.21E-04
40GO:0005980: glycogen catabolic process4.21E-04
41GO:0043489: RNA stabilization4.21E-04
42GO:0044262: cellular carbohydrate metabolic process4.21E-04
43GO:0005978: glycogen biosynthetic process4.99E-04
44GO:0006002: fructose 6-phosphate metabolic process6.09E-04
45GO:0019252: starch biosynthetic process6.75E-04
46GO:0010206: photosystem II repair7.29E-04
47GO:0005982: starch metabolic process8.60E-04
48GO:0010205: photoinhibition8.60E-04
49GO:0031648: protein destabilization9.10E-04
50GO:0010270: photosystem II oxygen evolving complex assembly9.10E-04
51GO:0035304: regulation of protein dephosphorylation9.10E-04
52GO:0009629: response to gravity9.10E-04
53GO:0005976: polysaccharide metabolic process9.10E-04
54GO:0007154: cell communication9.10E-04
55GO:0018026: peptidyl-lysine monomethylation9.10E-04
56GO:0090342: regulation of cell aging9.10E-04
57GO:0016050: vesicle organization1.48E-03
58GO:0048281: inflorescence morphogenesis1.48E-03
59GO:0006518: peptide metabolic process1.48E-03
60GO:0010623: programmed cell death involved in cell development1.48E-03
61GO:0035436: triose phosphate transmembrane transport1.48E-03
62GO:0090153: regulation of sphingolipid biosynthetic process1.48E-03
63GO:0006094: gluconeogenesis1.49E-03
64GO:0005986: sucrose biosynthetic process1.49E-03
65GO:0009817: defense response to fungus, incompatible interaction1.63E-03
66GO:0042742: defense response to bacterium1.63E-03
67GO:0010207: photosystem II assembly1.68E-03
68GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.14E-03
69GO:0009052: pentose-phosphate shunt, non-oxidative branch2.14E-03
70GO:0006241: CTP biosynthetic process2.14E-03
71GO:0010731: protein glutathionylation2.14E-03
72GO:0006424: glutamyl-tRNA aminoacylation2.14E-03
73GO:0006165: nucleoside diphosphate phosphorylation2.14E-03
74GO:0006228: UTP biosynthetic process2.14E-03
75GO:0010148: transpiration2.14E-03
76GO:0006289: nucleotide-excision repair2.33E-03
77GO:0009768: photosynthesis, light harvesting in photosystem I2.58E-03
78GO:0006808: regulation of nitrogen utilization2.88E-03
79GO:0015976: carbon utilization2.88E-03
80GO:0010023: proanthocyanidin biosynthetic process2.88E-03
81GO:0051322: anaphase2.88E-03
82GO:0009765: photosynthesis, light harvesting2.88E-03
83GO:0006109: regulation of carbohydrate metabolic process2.88E-03
84GO:0006183: GTP biosynthetic process2.88E-03
85GO:0045727: positive regulation of translation2.88E-03
86GO:2000122: negative regulation of stomatal complex development2.88E-03
87GO:0010600: regulation of auxin biosynthetic process2.88E-03
88GO:0006546: glycine catabolic process2.88E-03
89GO:0010508: positive regulation of autophagy2.88E-03
90GO:0051205: protein insertion into membrane2.88E-03
91GO:0015713: phosphoglycerate transport2.88E-03
92GO:0010037: response to carbon dioxide2.88E-03
93GO:0009644: response to high light intensity3.38E-03
94GO:0006097: glyoxylate cycle3.68E-03
95GO:0006461: protein complex assembly3.68E-03
96GO:0000304: response to singlet oxygen3.68E-03
97GO:0006284: base-excision repair3.68E-03
98GO:0016120: carotene biosynthetic process3.68E-03
99GO:0006544: glycine metabolic process3.68E-03
100GO:0045038: protein import into chloroplast thylakoid membrane3.68E-03
101GO:0010304: PSII associated light-harvesting complex II catabolic process4.56E-03
102GO:0042549: photosystem II stabilization4.56E-03
103GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.56E-03
104GO:0000470: maturation of LSU-rRNA4.56E-03
105GO:0009913: epidermal cell differentiation4.56E-03
106GO:0006828: manganese ion transport4.56E-03
107GO:0009643: photosynthetic acclimation4.56E-03
108GO:0006563: L-serine metabolic process4.56E-03
109GO:0006979: response to oxidative stress4.94E-03
110GO:0009955: adaxial/abaxial pattern specification5.49E-03
111GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.49E-03
112GO:0042026: protein refolding5.49E-03
113GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.49E-03
114GO:0006458: 'de novo' protein folding5.49E-03
115GO:1901259: chloroplast rRNA processing5.49E-03
116GO:0010103: stomatal complex morphogenesis6.49E-03
117GO:0010161: red light signaling pathway6.49E-03
118GO:0070370: cellular heat acclimation6.49E-03
119GO:0030091: protein repair7.55E-03
120GO:0010928: regulation of auxin mediated signaling pathway7.55E-03
121GO:0009704: de-etiolation7.55E-03
122GO:0017004: cytochrome complex assembly8.67E-03
123GO:0015996: chlorophyll catabolic process8.67E-03
124GO:0001558: regulation of cell growth8.67E-03
125GO:0009657: plastid organization8.67E-03
126GO:0051865: protein autoubiquitination9.85E-03
127GO:0006783: heme biosynthetic process9.85E-03
128GO:0048481: plant ovule development1.09E-02
129GO:0055114: oxidation-reduction process1.09E-02
130GO:0018298: protein-chromophore linkage1.09E-02
131GO:0035999: tetrahydrofolate interconversion1.11E-02
132GO:0042761: very long-chain fatty acid biosynthetic process1.11E-02
133GO:0045454: cell redox homeostasis1.12E-02
134GO:0048829: root cap development1.24E-02
135GO:0031627: telomeric loop formation1.24E-02
136GO:0006782: protoporphyrinogen IX biosynthetic process1.24E-02
137GO:0019684: photosynthesis, light reaction1.37E-02
138GO:0006816: calcium ion transport1.37E-02
139GO:0009073: aromatic amino acid family biosynthetic process1.37E-02
140GO:0043085: positive regulation of catalytic activity1.37E-02
141GO:0006415: translational termination1.37E-02
142GO:0009750: response to fructose1.37E-02
143GO:0018119: peptidyl-cysteine S-nitrosylation1.37E-02
144GO:0016485: protein processing1.37E-02
145GO:0009853: photorespiration1.38E-02
146GO:0007623: circadian rhythm1.41E-02
147GO:0034599: cellular response to oxidative stress1.45E-02
148GO:0045037: protein import into chloroplast stroma1.51E-02
149GO:0009718: anthocyanin-containing compound biosynthetic process1.65E-02
150GO:0009767: photosynthetic electron transport chain1.65E-02
151GO:0010628: positive regulation of gene expression1.65E-02
152GO:0010102: lateral root morphogenesis1.65E-02
153GO:0006108: malate metabolic process1.65E-02
154GO:0008152: metabolic process1.77E-02
155GO:0009266: response to temperature stimulus1.80E-02
156GO:0010020: chloroplast fission1.80E-02
157GO:0019253: reductive pentose-phosphate cycle1.80E-02
158GO:0005985: sucrose metabolic process1.95E-02
159GO:0010025: wax biosynthetic process2.11E-02
160GO:0006636: unsaturated fatty acid biosynthetic process2.11E-02
161GO:0006508: proteolysis2.24E-02
162GO:0009944: polarity specification of adaxial/abaxial axis2.27E-02
163GO:0000027: ribosomal large subunit assembly2.27E-02
164GO:0009585: red, far-red light phototransduction2.41E-02
165GO:0051302: regulation of cell division2.43E-02
166GO:0007017: microtubule-based process2.43E-02
167GO:0019915: lipid storage2.60E-02
168GO:0031408: oxylipin biosynthetic process2.60E-02
169GO:0016114: terpenoid biosynthetic process2.60E-02
170GO:0010017: red or far-red light signaling pathway2.78E-02
171GO:0016226: iron-sulfur cluster assembly2.78E-02
172GO:2000022: regulation of jasmonic acid mediated signaling pathway2.78E-02
173GO:0035428: hexose transmembrane transport2.78E-02
174GO:0006810: transport2.89E-02
175GO:0009686: gibberellin biosynthetic process2.96E-02
176GO:0009411: response to UV2.96E-02
177GO:0001944: vasculature development2.96E-02
178GO:0005975: carbohydrate metabolic process3.07E-02
179GO:0010089: xylem development3.14E-02
180GO:0046686: response to cadmium ion3.22E-02
181GO:0016117: carotenoid biosynthetic process3.32E-02
182GO:0009624: response to nematode3.44E-02
183GO:0048868: pollen tube development3.70E-02
184GO:0046323: glucose import3.70E-02
185GO:0006662: glycerol ether metabolic process3.70E-02
186GO:0015986: ATP synthesis coupled proton transport3.90E-02
187GO:0048825: cotyledon development4.10E-02
188GO:0000302: response to reactive oxygen species4.30E-02
189GO:1901657: glycosyl compound metabolic process4.72E-02
190GO:0030163: protein catabolic process4.72E-02
191GO:0032259: methylation4.91E-02
192GO:0006310: DNA recombination4.93E-02
193GO:0009790: embryo development4.99E-02
RankGO TermAdjusted P value
1GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
2GO:0051738: xanthophyll binding0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0005363: maltose transmembrane transporter activity0.00E+00
5GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
8GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
9GO:0016166: phytoene dehydrogenase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0004823: leucine-tRNA ligase activity0.00E+00
12GO:0009899: ent-kaurene synthase activity0.00E+00
13GO:0019843: rRNA binding3.38E-18
14GO:0003735: structural constituent of ribosome1.56E-12
15GO:0005528: FK506 binding6.10E-09
16GO:0008266: poly(U) RNA binding1.19E-07
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.63E-06
18GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.89E-06
19GO:0002161: aminoacyl-tRNA editing activity2.73E-05
20GO:0004375: glycine dehydrogenase (decarboxylating) activity5.93E-05
21GO:0016851: magnesium chelatase activity5.93E-05
22GO:0051920: peroxiredoxin activity3.09E-04
23GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.21E-04
24GO:0008184: glycogen phosphorylase activity4.21E-04
25GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.21E-04
26GO:0004856: xylulokinase activity4.21E-04
27GO:0009496: plastoquinol--plastocyanin reductase activity4.21E-04
28GO:0004134: 4-alpha-glucanotransferase activity4.21E-04
29GO:0004645: phosphorylase activity4.21E-04
30GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity4.21E-04
31GO:0010242: oxygen evolving activity4.21E-04
32GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity4.21E-04
33GO:0019203: carbohydrate phosphatase activity4.21E-04
34GO:0034256: chlorophyll(ide) b reductase activity4.21E-04
35GO:0008158: hedgehog receptor activity4.21E-04
36GO:0004853: uroporphyrinogen decarboxylase activity4.21E-04
37GO:0045485: omega-6 fatty acid desaturase activity4.21E-04
38GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.21E-04
39GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity4.21E-04
40GO:0004825: methionine-tRNA ligase activity4.21E-04
41GO:0004812: aminoacyl-tRNA ligase activity4.62E-04
42GO:0016209: antioxidant activity4.99E-04
43GO:0010297: heteropolysaccharide binding9.10E-04
44GO:0033201: alpha-1,4-glucan synthase activity9.10E-04
45GO:0004750: ribulose-phosphate 3-epimerase activity9.10E-04
46GO:0018708: thiol S-methyltransferase activity9.10E-04
47GO:0003844: 1,4-alpha-glucan branching enzyme activity9.10E-04
48GO:0008967: phosphoglycolate phosphatase activity9.10E-04
49GO:0016491: oxidoreductase activity1.10E-03
50GO:0044183: protein binding involved in protein folding1.15E-03
51GO:0016168: chlorophyll binding1.25E-03
52GO:0071917: triose-phosphate transmembrane transporter activity1.48E-03
53GO:0004324: ferredoxin-NADP+ reductase activity1.48E-03
54GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.48E-03
55GO:0043169: cation binding1.48E-03
56GO:0004373: glycogen (starch) synthase activity1.48E-03
57GO:0017150: tRNA dihydrouridine synthase activity1.48E-03
58GO:0004148: dihydrolipoyl dehydrogenase activity1.48E-03
59GO:0017108: 5'-flap endonuclease activity1.48E-03
60GO:0045174: glutathione dehydrogenase (ascorbate) activity1.48E-03
61GO:0030267: glyoxylate reductase (NADP) activity1.48E-03
62GO:0004222: metalloendopeptidase activity1.85E-03
63GO:0031409: pigment binding2.10E-03
64GO:0016149: translation release factor activity, codon specific2.14E-03
65GO:0004550: nucleoside diphosphate kinase activity2.14E-03
66GO:0043023: ribosomal large subunit binding2.14E-03
67GO:0004252: serine-type endopeptidase activity2.25E-03
68GO:0016279: protein-lysine N-methyltransferase activity2.88E-03
69GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.88E-03
70GO:0019104: DNA N-glycosylase activity2.88E-03
71GO:0009011: starch synthase activity2.88E-03
72GO:0019199: transmembrane receptor protein kinase activity2.88E-03
73GO:0008878: glucose-1-phosphate adenylyltransferase activity2.88E-03
74GO:0042277: peptide binding2.88E-03
75GO:0015120: phosphoglycerate transmembrane transporter activity2.88E-03
76GO:0008725: DNA-3-methyladenine glycosylase activity3.68E-03
77GO:0004372: glycine hydroxymethyltransferase activity3.68E-03
78GO:0003959: NADPH dehydrogenase activity3.68E-03
79GO:0016773: phosphotransferase activity, alcohol group as acceptor3.68E-03
80GO:2001070: starch binding4.56E-03
81GO:0004130: cytochrome-c peroxidase activity4.56E-03
82GO:0016615: malate dehydrogenase activity4.56E-03
83GO:0050662: coenzyme binding5.00E-03
84GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.49E-03
85GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.49E-03
86GO:0004602: glutathione peroxidase activity5.49E-03
87GO:0030060: L-malate dehydrogenase activity5.49E-03
88GO:0048038: quinone binding5.75E-03
89GO:0004033: aldo-keto reductase (NADP) activity7.55E-03
90GO:0015078: hydrogen ion transmembrane transporter activity8.67E-03
91GO:0003747: translation release factor activity9.85E-03
92GO:0008138: protein tyrosine/serine/threonine phosphatase activity9.85E-03
93GO:0008236: serine-type peptidase activity1.03E-02
94GO:0005384: manganese ion transmembrane transporter activity1.11E-02
95GO:0008047: enzyme activator activity1.24E-02
96GO:0047372: acylglycerol lipase activity1.37E-02
97GO:0003691: double-stranded telomeric DNA binding1.37E-02
98GO:0015386: potassium:proton antiporter activity1.37E-02
99GO:0000049: tRNA binding1.51E-02
100GO:0004089: carbonate dehydratase activity1.65E-02
101GO:0015095: magnesium ion transmembrane transporter activity1.65E-02
102GO:0031072: heat shock protein binding1.65E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity1.65E-02
104GO:0051537: 2 iron, 2 sulfur cluster binding1.94E-02
105GO:0051536: iron-sulfur cluster binding2.27E-02
106GO:0004857: enzyme inhibitor activity2.27E-02
107GO:0008168: methyltransferase activity2.34E-02
108GO:0015079: potassium ion transmembrane transporter activity2.43E-02
109GO:0004601: peroxidase activity2.45E-02
110GO:0022891: substrate-specific transmembrane transporter activity2.96E-02
111GO:0047134: protein-disulfide reductase activity3.32E-02
112GO:0051082: unfolded protein binding3.44E-02
113GO:0001085: RNA polymerase II transcription factor binding3.70E-02
114GO:0004791: thioredoxin-disulfide reductase activity3.90E-02
115GO:0005355: glucose transmembrane transporter activity3.90E-02
116GO:0004518: nuclease activity4.51E-02
117GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.72E-02
118GO:0030170: pyridoxal phosphate binding4.76E-02
119GO:0003684: damaged DNA binding4.93E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
4GO:0033557: Slx1-Slx4 complex0.00E+00
5GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
6GO:0044391: ribosomal subunit0.00E+00
7GO:0009507: chloroplast1.43E-93
8GO:0009570: chloroplast stroma3.57E-65
9GO:0009941: chloroplast envelope3.61E-63
10GO:0009534: chloroplast thylakoid1.59E-55
11GO:0009535: chloroplast thylakoid membrane9.58E-49
12GO:0009579: thylakoid2.95E-38
13GO:0009543: chloroplast thylakoid lumen9.31E-20
14GO:0031977: thylakoid lumen6.12E-15
15GO:0010287: plastoglobule6.93E-14
16GO:0005840: ribosome3.82E-13
17GO:0030095: chloroplast photosystem II1.19E-07
18GO:0009706: chloroplast inner membrane1.63E-07
19GO:0010319: stromule3.11E-07
20GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.03E-07
21GO:0009508: plastid chromosome4.17E-06
22GO:0016020: membrane5.12E-06
23GO:0009295: nucleoid7.61E-06
24GO:0048046: apoplast1.11E-05
25GO:0009533: chloroplast stromal thylakoid1.23E-05
26GO:0009654: photosystem II oxygen evolving complex1.43E-05
27GO:0010007: magnesium chelatase complex2.73E-05
28GO:0005960: glycine cleavage complex5.93E-05
29GO:0019898: extrinsic component of membrane6.39E-05
30GO:0031969: chloroplast membrane1.04E-04
31GO:0055035: plastid thylakoid membrane1.61E-04
32GO:0009536: plastid2.97E-04
33GO:0009782: photosystem I antenna complex4.21E-04
34GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.21E-04
35GO:0009501: amyloplast4.99E-04
36GO:0009538: photosystem I reaction center4.99E-04
37GO:0009523: photosystem II6.75E-04
38GO:0030093: chloroplast photosystem I9.10E-04
39GO:0000311: plastid large ribosomal subunit1.32E-03
40GO:0009509: chromoplast1.48E-03
41GO:0030076: light-harvesting complex1.89E-03
42GO:0015934: large ribosomal subunit1.97E-03
43GO:0009517: PSII associated light-harvesting complex II2.88E-03
44GO:0009512: cytochrome b6f complex3.68E-03
45GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)4.56E-03
46GO:0009522: photosystem I5.00E-03
47GO:0009840: chloroplastic endopeptidase Clp complex5.49E-03
48GO:0000783: nuclear telomere cap complex8.67E-03
49GO:0005763: mitochondrial small ribosomal subunit9.85E-03
50GO:0042644: chloroplast nucleoid9.85E-03
51GO:0045298: tubulin complex9.85E-03
52GO:0009574: preprophase band1.65E-02
53GO:0000312: plastid small ribosomal subunit1.80E-02
54GO:0043234: protein complex2.11E-02
55GO:0042651: thylakoid membrane2.43E-02
56GO:0015935: small ribosomal subunit2.60E-02
57GO:0009532: plastid stroma2.60E-02
58GO:0022625: cytosolic large ribosomal subunit3.42E-02
59GO:0005623: cell4.41E-02
<
Gene type



Gene DE type