co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G46540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1990592: protein K69-linked ufmylation	0.00E+00
2	GO:0006721: terpenoid metabolic process	0.00E+00
3	GO:0009236: cobalamin biosynthetic process	0.00E+00
4	GO:0001881: receptor recycling	0.00E+00
5	GO:0048870: cell motility	0.00E+00
6	GO:0018293: protein-FAD linkage	0.00E+00
7	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
8	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
9	GO:0070207: protein homotrimerization	0.00E+00
10	GO:0032780: negative regulation of ATPase activity	0.00E+00
11	GO:0009853: photorespiration	2.70E-12
12	GO:0006412: translation	2.52E-10
13	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	2.36E-09
14	GO:0015991: ATP hydrolysis coupled proton transport	3.62E-07
15	GO:0042254: ribosome biogenesis	1.06E-06
16	GO:0006511: ubiquitin-dependent protein catabolic process	2.00E-05
17	GO:0015992: proton transport	5.89E-05
18	GO:0006099: tricarboxylic acid cycle	1.49E-04
19	GO:0055114: oxidation-reduction process	3.20E-04
20	GO:0006555: methionine metabolic process	4.30E-04
21	GO:0006796: phosphate-containing compound metabolic process	4.30E-04
22	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	4.30E-04
23	GO:0051603: proteolysis involved in cellular protein catabolic process	4.33E-04
24	GO:0019509: L-methionine salvage from methylthioadenosine	5.71E-04
25	GO:0016487: farnesol metabolic process	6.33E-04
26	GO:0009240: isopentenyl diphosphate biosynthetic process	6.33E-04
27	GO:0009852: auxin catabolic process	6.33E-04
28	GO:0031539: positive regulation of anthocyanin metabolic process	6.33E-04
29	GO:0031468: nuclear envelope reassembly	6.33E-04
30	GO:2001006: regulation of cellulose biosynthetic process	6.33E-04
31	GO:0019354: siroheme biosynthetic process	6.33E-04
32	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	7.30E-04
33	GO:0045454: cell redox homeostasis	7.32E-04
34	GO:0000028: ribosomal small subunit assembly	9.07E-04
35	GO:0022900: electron transport chain	1.10E-03
36	GO:0006662: glycerol ether metabolic process	1.22E-03
37	GO:0009245: lipid A biosynthetic process	1.32E-03
38	GO:0015986: ATP synthesis coupled proton transport	1.34E-03
39	GO:0006452: translational frameshifting	1.36E-03
40	GO:0043255: regulation of carbohydrate biosynthetic process	1.36E-03
41	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	1.36E-03
42	GO:0007163: establishment or maintenance of cell polarity	1.36E-03
43	GO:0006432: phenylalanyl-tRNA aminoacylation	1.36E-03
44	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	1.36E-03
45	GO:0080026: response to indolebutyric acid	1.36E-03
46	GO:0045905: positive regulation of translational termination	1.36E-03
47	GO:0071668: plant-type cell wall assembly	1.36E-03
48	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	1.36E-03
49	GO:0050992: dimethylallyl diphosphate biosynthetic process	1.36E-03
50	GO:0008154: actin polymerization or depolymerization	1.36E-03
51	GO:0045901: positive regulation of translational elongation	1.36E-03
52	GO:0032786: positive regulation of DNA-templated transcription, elongation	2.25E-03
53	GO:0008333: endosome to lysosome transport	2.25E-03
54	GO:0015940: pantothenate biosynthetic process	2.25E-03
55	GO:0071492: cellular response to UV-A	2.25E-03
56	GO:0045793: positive regulation of cell size	2.25E-03
57	GO:0006760: folic acid-containing compound metabolic process	2.25E-03
58	GO:0034227: tRNA thio-modification	2.25E-03
59	GO:0006006: glucose metabolic process	2.76E-03
60	GO:0006107: oxaloacetate metabolic process	3.26E-03
61	GO:0006241: CTP biosynthetic process	3.26E-03
62	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.26E-03
63	GO:0006165: nucleoside diphosphate phosphorylation	3.26E-03
64	GO:0042989: sequestering of actin monomers	3.26E-03
65	GO:1901332: negative regulation of lateral root development	3.26E-03
66	GO:0006228: UTP biosynthetic process	3.26E-03
67	GO:0009963: positive regulation of flavonoid biosynthetic process	3.26E-03
68	GO:0006168: adenine salvage	3.26E-03
69	GO:0080024: indolebutyric acid metabolic process	3.26E-03
70	GO:0032877: positive regulation of DNA endoreduplication	3.26E-03
71	GO:0006166: purine ribonucleoside salvage	3.26E-03
72	GO:0046686: response to cadmium ion	3.42E-03
73	GO:0007030: Golgi organization	3.49E-03
74	GO:0006487: protein N-linked glycosylation	4.33E-03
75	GO:0010387: COP9 signalosome assembly	4.41E-03
76	GO:0009765: photosynthesis, light harvesting	4.41E-03
77	GO:0006183: GTP biosynthetic process	4.41E-03
78	GO:0010363: regulation of plant-type hypersensitive response	4.41E-03
79	GO:0006221: pyrimidine nucleotide biosynthetic process	4.41E-03
80	GO:0044205: 'de novo' UMP biosynthetic process	4.41E-03
81	GO:0032366: intracellular sterol transport	4.41E-03
82	GO:0051781: positive regulation of cell division	4.41E-03
83	GO:0071486: cellular response to high light intensity	4.41E-03
84	GO:0034599: cellular response to oxidative stress	5.17E-03
85	GO:0061077: chaperone-mediated protein folding	5.26E-03
86	GO:0030041: actin filament polymerization	5.66E-03
87	GO:0097428: protein maturation by iron-sulfur cluster transfer	5.66E-03
88	GO:0044209: AMP salvage	5.66E-03
89	GO:0016226: iron-sulfur cluster assembly	5.77E-03
90	GO:0006012: galactose metabolic process	6.30E-03
91	GO:0043248: proteasome assembly	7.03E-03
92	GO:0007035: vacuolar acidification	7.03E-03
93	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	7.03E-03
94	GO:0080022: primary root development	8.05E-03
95	GO:0000413: protein peptidyl-prolyl isomerization	8.05E-03
96	GO:0098655: cation transmembrane transport	8.49E-03
97	GO:0000338: protein deneddylation	1.01E-02
98	GO:0022904: respiratory electron transport chain	1.01E-02
99	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.01E-02
100	GO:0032880: regulation of protein localization	1.01E-02
101	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.17E-02
102	GO:0009690: cytokinin metabolic process	1.17E-02
103	GO:0006506: GPI anchor biosynthetic process	1.17E-02
104	GO:0045010: actin nucleation	1.17E-02
105	GO:0048658: anther wall tapetum development	1.17E-02
106	GO:0009231: riboflavin biosynthetic process	1.17E-02
107	GO:0006914: autophagy	1.31E-02
108	GO:0009808: lignin metabolic process	1.35E-02
109	GO:0010099: regulation of photomorphogenesis	1.35E-02
110	GO:0009821: alkaloid biosynthetic process	1.54E-02
111	GO:0080144: amino acid homeostasis	1.54E-02
112	GO:0046916: cellular transition metal ion homeostasis	1.54E-02
113	GO:0006754: ATP biosynthetic process	1.54E-02
114	GO:0048589: developmental growth	1.54E-02
115	GO:0000902: cell morphogenesis	1.54E-02
116	GO:0046685: response to arsenic-containing substance	1.54E-02
117	GO:0000387: spliceosomal snRNP assembly	1.73E-02
118	GO:0006325: chromatin organization	1.93E-02
119	GO:0000103: sulfate assimilation	1.93E-02
120	GO:0043069: negative regulation of programmed cell death	1.93E-02
121	GO:0052544: defense response by callose deposition in cell wall	2.14E-02
122	GO:0006790: sulfur compound metabolic process	2.36E-02
123	GO:0016925: protein sumoylation	2.36E-02
124	GO:0010043: response to zinc ion	2.37E-02
125	GO:0006829: zinc II ion transport	2.58E-02
126	GO:0006108: malate metabolic process	2.58E-02
127	GO:0006807: nitrogen compound metabolic process	2.58E-02
128	GO:0009691: cytokinin biosynthetic process	2.58E-02
129	GO:0010229: inflorescence development	2.58E-02
130	GO:0009651: response to salt stress	2.60E-02
131	GO:0007034: vacuolar transport	2.81E-02
132	GO:0009735: response to cytokinin	2.88E-02
133	GO:0030001: metal ion transport	2.96E-02
134	GO:0019853: L-ascorbic acid biosynthetic process	3.05E-02
135	GO:0009901: anther dehiscence	3.05E-02
136	GO:0010039: response to iron ion	3.05E-02
137	GO:0042753: positive regulation of circadian rhythm	3.30E-02
138	GO:0006071: glycerol metabolic process	3.30E-02
139	GO:0009640: photomorphogenesis	3.35E-02
140	GO:0007010: cytoskeleton organization	3.55E-02
141	GO:0006406: mRNA export from nucleus	3.55E-02
142	GO:2000377: regulation of reactive oxygen species metabolic process	3.55E-02
143	GO:0009116: nucleoside metabolic process	3.55E-02
144	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.57E-02
145	GO:0008299: isoprenoid biosynthetic process	3.81E-02
146	GO:0006825: copper ion transport	3.81E-02
147	GO:0051302: regulation of cell division	3.81E-02
148	GO:0019915: lipid storage	4.07E-02
149	GO:0010431: seed maturation	4.07E-02
150	GO:0010017: red or far-red light signaling pathway	4.35E-02
151	GO:0009585: red, far-red light phototransduction	4.50E-02
152	GO:0006979: response to oxidative stress	4.57E-02
153	GO:0019722: calcium-mediated signaling	4.90E-02
154	GO:0010089: xylem development	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
3	GO:0051266: sirohydrochlorin ferrochelatase activity	0.00E+00
4	GO:0004746: riboflavin synthase activity	0.00E+00
5	GO:0061799: cyclic pyranopterin monophosphate synthase activity	0.00E+00
6	GO:0004151: dihydroorotase activity	0.00E+00
7	GO:0047886: farnesol dehydrogenase activity	0.00E+00
8	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
9	GO:0016852: sirohydrochlorin cobaltochelatase activity	0.00E+00
10	GO:0042030: ATPase inhibitor activity	0.00E+00
11	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
12	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
13	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
14	GO:0003735: structural constituent of ribosome	4.84E-17
15	GO:0004298: threonine-type endopeptidase activity	6.58E-13
16	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.07E-09
17	GO:0004129: cytochrome-c oxidase activity	1.98E-07
18	GO:0008121: ubiquinol-cytochrome-c reductase activity	5.95E-07
19	GO:0050897: cobalt ion binding	6.46E-07
20	GO:0046961: proton-transporting ATPase activity, rotational mechanism	8.48E-06
21	GO:0008794: arsenate reductase (glutaredoxin) activity	8.48E-06
22	GO:0008233: peptidase activity	1.81E-05
23	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.18E-05
24	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	5.70E-05
25	GO:0047617: acyl-CoA hydrolase activity	1.20E-04
26	GO:0015035: protein disulfide oxidoreductase activity	1.56E-04
27	GO:0004576: oligosaccharyl transferase activity	2.04E-04
28	GO:0004089: carbonate dehydratase activity	2.76E-04
29	GO:0016788: hydrolase activity, acting on ester bonds	3.08E-04
30	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.08E-04
31	GO:0031177: phosphopantetheine binding	4.30E-04
32	GO:0000035: acyl binding	5.71E-04
33	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	6.33E-04
34	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	6.33E-04
35	GO:0080047: GDP-L-galactose phosphorylase activity	6.33E-04
36	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	6.33E-04
37	GO:0030611: arsenate reductase activity	6.33E-04
38	GO:0080048: GDP-D-glucose phosphorylase activity	6.33E-04
39	GO:0004427: inorganic diphosphatase activity	7.30E-04
40	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	9.07E-04
41	GO:0004034: aldose 1-epimerase activity	9.07E-04
42	GO:0035064: methylated histone binding	9.07E-04
43	GO:0047134: protein-disulfide reductase activity	1.00E-03
44	GO:0015078: hydrogen ion transmembrane transporter activity	1.10E-03
45	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.22E-03
46	GO:0004791: thioredoxin-disulfide reductase activity	1.34E-03
47	GO:0004826: phenylalanine-tRNA ligase activity	1.36E-03
48	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.88E-03
49	GO:0005047: signal recognition particle binding	2.25E-03
50	GO:0004557: alpha-galactosidase activity	2.25E-03
51	GO:0032403: protein complex binding	2.25E-03
52	GO:0052692: raffinose alpha-galactosidase activity	2.25E-03
53	GO:0008430: selenium binding	2.25E-03
54	GO:0000254: C-4 methylsterol oxidase activity	3.26E-03
55	GO:0003999: adenine phosphoribosyltransferase activity	3.26E-03
56	GO:0022890: inorganic cation transmembrane transporter activity	3.26E-03
57	GO:0004550: nucleoside diphosphate kinase activity	3.26E-03
58	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	3.26E-03
59	GO:0005528: FK506 binding	4.33E-03
60	GO:0051536: iron-sulfur cluster binding	4.33E-03
61	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	4.41E-03
62	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	4.41E-03
63	GO:0050302: indole-3-acetaldehyde oxidase activity	4.41E-03
64	GO:0000993: RNA polymerase II core binding	4.41E-03
65	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	4.41E-03
66	GO:0010011: auxin binding	4.41E-03
67	GO:0003746: translation elongation factor activity	4.88E-03
68	GO:0008177: succinate dehydrogenase (ubiquinone) activity	5.66E-03
69	GO:0008198: ferrous iron binding	5.66E-03
70	GO:0003785: actin monomer binding	5.66E-03
71	GO:0016651: oxidoreductase activity, acting on NAD(P)H	5.66E-03
72	GO:0005496: steroid binding	5.66E-03
73	GO:0031386: protein tag	5.66E-03
74	GO:0051539: 4 iron, 4 sulfur cluster binding	5.78E-03
75	GO:0051117: ATPase binding	7.03E-03
76	GO:0016462: pyrophosphatase activity	7.03E-03
77	GO:0080046: quercetin 4'-O-glucosyltransferase activity	7.03E-03
78	GO:0051537: 2 iron, 2 sulfur cluster binding	7.48E-03
79	GO:0051920: peroxiredoxin activity	8.49E-03
80	GO:0016853: isomerase activity	9.35E-03
81	GO:0042162: telomeric DNA binding	1.01E-02
82	GO:0008143: poly(A) binding	1.01E-02
83	GO:0008320: protein transmembrane transporter activity	1.01E-02
84	GO:0005085: guanyl-nucleotide exchange factor activity	1.01E-02
85	GO:0043022: ribosome binding	1.17E-02
86	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.17E-02
87	GO:0016209: antioxidant activity	1.17E-02
88	GO:0046914: transition metal ion binding	1.35E-02
89	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.54E-02
90	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.54E-02
91	GO:0001055: RNA polymerase II activity	1.73E-02
92	GO:0045309: protein phosphorylated amino acid binding	1.73E-02
93	GO:0016844: strictosidine synthase activity	1.73E-02
94	GO:0003729: mRNA binding	1.81E-02
95	GO:0019904: protein domain specific binding	2.14E-02
96	GO:0001054: RNA polymerase I activity	2.14E-02
97	GO:0001056: RNA polymerase III activity	2.36E-02
98	GO:0000049: tRNA binding	2.36E-02
99	GO:0004175: endopeptidase activity	2.81E-02
100	GO:0004364: glutathione transferase activity	3.22E-02
101	GO:0004725: protein tyrosine phosphatase activity	3.30E-02
102	GO:0043130: ubiquitin binding	3.55E-02
103	GO:0005198: structural molecule activity	3.76E-02
104	GO:0042802: identical protein binding	4.18E-02
105	GO:0009055: electron carrier activity	4.28E-02
106	GO:0016298: lipase activity	4.66E-02
107	GO:0003727: single-stranded RNA binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
2	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
3	GO:0005747: mitochondrial respiratory chain complex I	4.46E-27
4	GO:0005840: ribosome	1.46E-17
5	GO:0045271: respiratory chain complex I	5.27E-17
6	GO:0005839: proteasome core complex	6.58E-13
7	GO:0000502: proteasome complex	2.81E-12
8	GO:0022625: cytosolic large ribosomal subunit	2.16E-11
9	GO:0005829: cytosol	2.41E-11
10	GO:0031966: mitochondrial membrane	4.46E-11
11	GO:0022626: cytosolic ribosome	1.03E-10
12	GO:0005750: mitochondrial respiratory chain complex III	2.27E-10
13	GO:0005753: mitochondrial proton-transporting ATP synthase complex	3.73E-10
14	GO:0005773: vacuole	3.48E-08
15	GO:0005774: vacuolar membrane	7.84E-08
16	GO:0022627: cytosolic small ribosomal subunit	4.73E-07
17	GO:0045273: respiratory chain complex II	1.06E-06
18	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.06E-06
19	GO:0005739: mitochondrion	1.14E-06
20	GO:0005783: endoplasmic reticulum	1.63E-06
21	GO:0005737: cytoplasm	1.11E-05
22	GO:0005758: mitochondrial intermembrane space	3.99E-05
23	GO:0019773: proteasome core complex, alpha-subunit complex	6.87E-05
24	GO:0016020: membrane	1.53E-04
25	GO:0033179: proton-transporting V-type ATPase, V0 domain	2.04E-04
26	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	2.04E-04
27	GO:0008250: oligosaccharyltransferase complex	3.08E-04
28	GO:0005746: mitochondrial respiratory chain	3.08E-04
29	GO:0070469: respiratory chain	5.75E-04
30	GO:0032044: DSIF complex	6.33E-04
31	GO:0019774: proteasome core complex, beta-subunit complex	6.33E-04
32	GO:0072546: ER membrane protein complex	6.33E-04
33	GO:0005732: small nucleolar ribonucleoprotein complex	8.98E-04
34	GO:0000421: autophagosome membrane	9.07E-04
35	GO:0009507: chloroplast	1.35E-03
36	GO:0005697: telomerase holoenzyme complex	1.36E-03
37	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	1.36E-03
38	GO:0005759: mitochondrial matrix	1.71E-03
39	GO:0005730: nucleolus	1.72E-03
40	GO:0009536: plastid	1.77E-03
41	GO:0005838: proteasome regulatory particle	2.25E-03
42	GO:0005853: eukaryotic translation elongation factor 1 complex	2.25E-03
43	GO:0005751: mitochondrial respiratory chain complex IV	2.25E-03
44	GO:0005788: endoplasmic reticulum lumen	2.75E-03
45	GO:0033180: proton-transporting V-type ATPase, V1 domain	3.26E-03
46	GO:1990726: Lsm1-7-Pat1 complex	3.26E-03
47	GO:0000325: plant-type vacuole	4.34E-03
48	GO:0016471: vacuolar proton-transporting V-type ATPase complex	4.41E-03
49	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	5.66E-03
50	GO:0031410: cytoplasmic vesicle	5.77E-03
51	GO:0031463: Cul3-RING ubiquitin ligase complex	7.03E-03
52	GO:0031209: SCAR complex	7.03E-03
53	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	7.03E-03
54	GO:0005771: multivesicular body	7.03E-03
55	GO:0032588: trans-Golgi network membrane	7.03E-03
56	GO:0030904: retromer complex	7.03E-03
57	GO:0005789: endoplasmic reticulum membrane	8.03E-03
58	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.01E-02
59	GO:0005688: U6 snRNP	1.17E-02
60	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.35E-02
61	GO:0005736: DNA-directed RNA polymerase I complex	1.54E-02
62	GO:0008180: COP9 signalosome	1.54E-02
63	GO:0031901: early endosome membrane	1.54E-02
64	GO:0005763: mitochondrial small ribosomal subunit	1.54E-02
65	GO:0005777: peroxisome	1.57E-02
66	GO:0005794: Golgi apparatus	1.63E-02
67	GO:0005666: DNA-directed RNA polymerase III complex	1.73E-02
68	GO:0071011: precatalytic spliceosome	1.73E-02
69	GO:0005740: mitochondrial envelope	1.93E-02
70	GO:0008541: proteasome regulatory particle, lid subcomplex	2.14E-02
71	GO:0071013: catalytic step 2 spliceosome	2.14E-02
72	GO:0005665: DNA-directed RNA polymerase II, core complex	2.36E-02
73	GO:0015934: large ribosomal subunit	2.37E-02
74	GO:0009508: plastid chromosome	2.58E-02
75	GO:0019013: viral nucleocapsid	2.58E-02
76	GO:0005938: cell cortex	2.58E-02
77	GO:0005769: early endosome	3.30E-02
78	GO:0000419: DNA-directed RNA polymerase V complex	3.30E-02
79	GO:0015935: small ribosomal subunit	4.07E-02
80	GO:0015629: actin cytoskeleton	4.62E-02