co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G46390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015746: citrate transport	0.00E+00
2	GO:0007530: sex determination	0.00E+00
3	GO:0042362: fat-soluble vitamin biosynthetic process	0.00E+00
4	GO:0006721: terpenoid metabolic process	0.00E+00
5	GO:0009236: cobalamin biosynthetic process	0.00E+00
6	GO:0001881: receptor recycling	0.00E+00
7	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
8	GO:0018293: protein-FAD linkage	0.00E+00
9	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
10	GO:0070207: protein homotrimerization	0.00E+00
11	GO:0006412: translation	7.50E-29
12	GO:0042254: ribosome biogenesis	2.65E-22
13	GO:0009853: photorespiration	3.97E-07
14	GO:0000027: ribosomal large subunit assembly	2.52E-05
15	GO:0006511: ubiquitin-dependent protein catabolic process	1.50E-04
16	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	4.54E-04
17	GO:2001006: regulation of cellulose biosynthetic process	5.43E-04
18	GO:0019354: siroheme biosynthetic process	5.43E-04
19	GO:0016487: farnesol metabolic process	5.43E-04
20	GO:0009852: auxin catabolic process	5.43E-04
21	GO:0031539: positive regulation of anthocyanin metabolic process	5.43E-04
22	GO:0031468: nuclear envelope reassembly	5.43E-04
23	GO:0010265: SCF complex assembly	5.43E-04
24	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	5.81E-04
25	GO:0000028: ribosomal small subunit assembly	7.24E-04
26	GO:0022900: electron transport chain	8.82E-04
27	GO:0098656: anion transmembrane transport	1.05E-03
28	GO:0009245: lipid A biosynthetic process	1.05E-03
29	GO:0006452: translational frameshifting	1.17E-03
30	GO:0009915: phloem sucrose loading	1.17E-03
31	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	1.17E-03
32	GO:0006432: phenylalanyl-tRNA aminoacylation	1.17E-03
33	GO:0080026: response to indolebutyric acid	1.17E-03
34	GO:0045905: positive regulation of translational termination	1.17E-03
35	GO:0071668: plant-type cell wall assembly	1.17E-03
36	GO:0008154: actin polymerization or depolymerization	1.17E-03
37	GO:0045901: positive regulation of translational elongation	1.17E-03
38	GO:0019222: regulation of metabolic process	1.17E-03
39	GO:0006820: anion transport	1.92E-03
40	GO:1902626: assembly of large subunit precursor of preribosome	1.92E-03
41	GO:0008333: endosome to lysosome transport	1.92E-03
42	GO:0015940: pantothenate biosynthetic process	1.92E-03
43	GO:0045793: positive regulation of cell size	1.92E-03
44	GO:0006760: folic acid-containing compound metabolic process	1.92E-03
45	GO:0034227: tRNA thio-modification	1.92E-03
46	GO:0006006: glucose metabolic process	2.18E-03
47	GO:0070301: cellular response to hydrogen peroxide	2.78E-03
48	GO:0006107: oxaloacetate metabolic process	2.78E-03
49	GO:0006241: CTP biosynthetic process	2.78E-03
50	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.78E-03
51	GO:0006165: nucleoside diphosphate phosphorylation	2.78E-03
52	GO:0042989: sequestering of actin monomers	2.78E-03
53	GO:1901332: negative regulation of lateral root development	2.78E-03
54	GO:0006228: UTP biosynthetic process	2.78E-03
55	GO:0009963: positive regulation of flavonoid biosynthetic process	2.78E-03
56	GO:0006168: adenine salvage	2.78E-03
57	GO:0080024: indolebutyric acid metabolic process	2.78E-03
58	GO:0001676: long-chain fatty acid metabolic process	2.78E-03
59	GO:0032877: positive regulation of DNA endoreduplication	2.78E-03
60	GO:0046836: glycolipid transport	2.78E-03
61	GO:0006166: purine ribonucleoside salvage	2.78E-03
62	GO:0055114: oxidation-reduction process	3.22E-03
63	GO:0006487: protein N-linked glycosylation	3.42E-03
64	GO:0051365: cellular response to potassium ion starvation	3.75E-03
65	GO:0006183: GTP biosynthetic process	3.75E-03
66	GO:0010363: regulation of plant-type hypersensitive response	3.75E-03
67	GO:0006221: pyrimidine nucleotide biosynthetic process	3.75E-03
68	GO:0044205: 'de novo' UMP biosynthetic process	3.75E-03
69	GO:0032366: intracellular sterol transport	3.75E-03
70	GO:0051781: positive regulation of cell division	3.75E-03
71	GO:0006099: tricarboxylic acid cycle	3.83E-03
72	GO:0061077: chaperone-mediated protein folding	4.16E-03
73	GO:0005513: detection of calcium ion	4.81E-03
74	GO:0097428: protein maturation by iron-sulfur cluster transfer	4.81E-03
75	GO:0044209: AMP salvage	4.81E-03
76	GO:0019722: calcium-mediated signaling	5.41E-03
77	GO:0045454: cell redox homeostasis	5.79E-03
78	GO:0043248: proteasome assembly	5.96E-03
79	GO:0006796: phosphate-containing compound metabolic process	5.96E-03
80	GO:0006574: valine catabolic process	5.96E-03
81	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	5.96E-03
82	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	5.96E-03
83	GO:0006855: drug transmembrane transport	6.10E-03
84	GO:0009735: response to cytokinin	6.34E-03
85	GO:0015991: ATP hydrolysis coupled proton transport	6.35E-03
86	GO:0080022: primary root development	6.35E-03
87	GO:0000413: protein peptidyl-prolyl isomerization	6.35E-03
88	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.74E-03
89	GO:0006662: glycerol ether metabolic process	6.85E-03
90	GO:1901001: negative regulation of response to salt stress	7.20E-03
91	GO:0010189: vitamin E biosynthetic process	7.20E-03
92	GO:0015986: ATP synthesis coupled proton transport	7.37E-03
93	GO:0009617: response to bacterium	7.44E-03
94	GO:0051603: proteolysis involved in cellular protein catabolic process	7.67E-03
95	GO:0010193: response to ozone	8.47E-03
96	GO:1900056: negative regulation of leaf senescence	8.52E-03
97	GO:0022904: respiratory electron transport chain	8.52E-03
98	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	8.52E-03
99	GO:0010044: response to aluminum ion	8.52E-03
100	GO:0032880: regulation of protein localization	8.52E-03
101	GO:0009787: regulation of abscisic acid-activated signaling pathway	9.92E-03
102	GO:0009690: cytokinin metabolic process	9.92E-03
103	GO:0006506: GPI anchor biosynthetic process	9.92E-03
104	GO:0048658: anther wall tapetum development	9.92E-03
105	GO:0009231: riboflavin biosynthetic process	9.92E-03
106	GO:0009808: lignin metabolic process	1.14E-02
107	GO:0010099: regulation of photomorphogenesis	1.14E-02
108	GO:0046685: response to arsenic-containing substance	1.30E-02
109	GO:0080144: amino acid homeostasis	1.30E-02
110	GO:0006754: ATP biosynthetic process	1.30E-02
111	GO:0048589: developmental growth	1.30E-02
112	GO:0009060: aerobic respiration	1.30E-02
113	GO:0000387: spliceosomal snRNP assembly	1.46E-02
114	GO:0006995: cellular response to nitrogen starvation	1.63E-02
115	GO:0000103: sulfate assimilation	1.63E-02
116	GO:0043069: negative regulation of programmed cell death	1.63E-02
117	GO:0052544: defense response by callose deposition in cell wall	1.81E-02
118	GO:0009631: cold acclimation	1.87E-02
119	GO:0010043: response to zinc ion	1.87E-02
120	GO:0008361: regulation of cell size	1.99E-02
121	GO:0006790: sulfur compound metabolic process	1.99E-02
122	GO:0016925: protein sumoylation	1.99E-02
123	GO:0034599: cellular response to oxidative stress	2.14E-02
124	GO:0010628: positive regulation of gene expression	2.18E-02
125	GO:0010102: lateral root morphogenesis	2.18E-02
126	GO:0006626: protein targeting to mitochondrion	2.18E-02
127	GO:0006807: nitrogen compound metabolic process	2.18E-02
128	GO:0006108: malate metabolic process	2.18E-02
129	GO:0010229: inflorescence development	2.18E-02
130	GO:0050826: response to freezing	2.18E-02
131	GO:0007034: vacuolar transport	2.37E-02
132	GO:0009266: response to temperature stimulus	2.37E-02
133	GO:0006631: fatty acid metabolic process	2.44E-02
134	GO:0007030: Golgi organization	2.58E-02
135	GO:0019853: L-ascorbic acid biosynthetic process	2.58E-02
136	GO:0009901: anther dehiscence	2.58E-02
137	GO:0010039: response to iron ion	2.58E-02
138	GO:0042753: positive regulation of circadian rhythm	2.78E-02
139	GO:0006636: unsaturated fatty acid biosynthetic process	2.78E-02
140	GO:0006071: glycerol metabolic process	2.78E-02
141	GO:0046686: response to cadmium ion	2.83E-02
142	GO:0006979: response to oxidative stress	2.96E-02
143	GO:0009116: nucleoside metabolic process	3.00E-02
144	GO:0007010: cytoskeleton organization	3.00E-02
145	GO:0006406: mRNA export from nucleus	3.00E-02
146	GO:0006289: nucleotide-excision repair	3.00E-02
147	GO:2000377: regulation of reactive oxygen species metabolic process	3.00E-02
148	GO:0009651: response to salt stress	3.04E-02
149	GO:0019915: lipid storage	3.44E-02
150	GO:0015992: proton transport	3.44E-02
151	GO:0048511: rhythmic process	3.44E-02
152	GO:0010431: seed maturation	3.44E-02
153	GO:0010017: red or far-red light signaling pathway	3.67E-02
154	GO:0016226: iron-sulfur cluster assembly	3.67E-02
155	GO:0007005: mitochondrion organization	3.67E-02
156	GO:0010089: xylem development	4.14E-02
157	GO:0042147: retrograde transport, endosome to Golgi	4.39E-02
158	GO:0042631: cellular response to water deprivation	4.63E-02
159	GO:0034220: ion transmembrane transport	4.63E-02
160	GO:0010051: xylem and phloem pattern formation	4.63E-02
161	GO:0010118: stomatal movement	4.63E-02
162	GO:0009958: positive gravitropism	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
2	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
3	GO:0050152: omega-amidase activity	0.00E+00
4	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
5	GO:0051266: sirohydrochlorin ferrochelatase activity	0.00E+00
6	GO:0004746: riboflavin synthase activity	0.00E+00
7	GO:0010176: homogentisate phytyltransferase activity	0.00E+00
8	GO:0004151: dihydroorotase activity	0.00E+00
9	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
10	GO:0047886: farnesol dehydrogenase activity	0.00E+00
11	GO:0016852: sirohydrochlorin cobaltochelatase activity	0.00E+00
12	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
13	GO:0003735: structural constituent of ribosome	2.38E-40
14	GO:0004298: threonine-type endopeptidase activity	8.75E-10
15	GO:0004129: cytochrome-c oxidase activity	1.05E-07
16	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.03E-05
17	GO:0008121: ubiquinol-cytochrome-c reductase activity	2.32E-05
18	GO:0003729: mRNA binding	5.66E-05
19	GO:0004576: oligosaccharyl transferase activity	1.59E-04
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.96E-04
21	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.42E-04
22	GO:0031177: phosphopantetheine binding	3.41E-04
23	GO:0000035: acyl binding	4.54E-04
24	GO:0004602: glutathione peroxidase activity	4.54E-04
25	GO:0050897: cobalt ion binding	5.34E-04
26	GO:0015137: citrate transmembrane transporter activity	5.43E-04
27	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	5.43E-04
28	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	5.43E-04
29	GO:0080047: GDP-L-galactose phosphorylase activity	5.43E-04
30	GO:0030611: arsenate reductase activity	5.43E-04
31	GO:0080048: GDP-D-glucose phosphorylase activity	5.43E-04
32	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	7.24E-04
33	GO:0015288: porin activity	7.24E-04
34	GO:0019843: rRNA binding	7.57E-04
35	GO:0008308: voltage-gated anion channel activity	8.82E-04
36	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.10E-04
37	GO:0008233: peptidase activity	1.08E-03
38	GO:0004826: phenylalanine-tRNA ligase activity	1.17E-03
39	GO:0008517: folic acid transporter activity	1.17E-03
40	GO:0008794: arsenate reductase (glutaredoxin) activity	1.67E-03
41	GO:0005047: signal recognition particle binding	1.92E-03
42	GO:0004557: alpha-galactosidase activity	1.92E-03
43	GO:0052692: raffinose alpha-galactosidase activity	1.92E-03
44	GO:0004089: carbonate dehydratase activity	2.18E-03
45	GO:0017089: glycolipid transporter activity	2.78E-03
46	GO:0003999: adenine phosphoribosyltransferase activity	2.78E-03
47	GO:0004550: nucleoside diphosphate kinase activity	2.78E-03
48	GO:0008097: 5S rRNA binding	2.78E-03
49	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	2.78E-03
50	GO:0043130: ubiquitin binding	3.42E-03
51	GO:0005528: FK506 binding	3.42E-03
52	GO:0051536: iron-sulfur cluster binding	3.42E-03
53	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	3.75E-03
54	GO:0070628: proteasome binding	3.75E-03
55	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.75E-03
56	GO:0050302: indole-3-acetaldehyde oxidase activity	3.75E-03
57	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	3.75E-03
58	GO:0004659: prenyltransferase activity	3.75E-03
59	GO:0010011: auxin binding	3.75E-03
60	GO:0051861: glycolipid binding	3.75E-03
61	GO:0051539: 4 iron, 4 sulfur cluster binding	4.28E-03
62	GO:0008177: succinate dehydrogenase (ubiquinone) activity	4.81E-03
63	GO:0008198: ferrous iron binding	4.81E-03
64	GO:0003785: actin monomer binding	4.81E-03
65	GO:0016651: oxidoreductase activity, acting on NAD(P)H	4.81E-03
66	GO:0005496: steroid binding	4.81E-03
67	GO:0031386: protein tag	4.81E-03
68	GO:0047134: protein-disulfide reductase activity	5.87E-03
69	GO:0031593: polyubiquitin binding	5.96E-03
70	GO:0051117: ATPase binding	5.96E-03
71	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	5.96E-03
72	GO:0080046: quercetin 4'-O-glucosyltransferase activity	5.96E-03
73	GO:0102391: decanoate--CoA ligase activity	7.20E-03
74	GO:0051920: peroxiredoxin activity	7.20E-03
75	GO:0004791: thioredoxin-disulfide reductase activity	7.37E-03
76	GO:0042162: telomeric DNA binding	8.52E-03
77	GO:0004427: inorganic diphosphatase activity	8.52E-03
78	GO:0008320: protein transmembrane transporter activity	8.52E-03
79	GO:0005085: guanyl-nucleotide exchange factor activity	8.52E-03
80	GO:0004467: long-chain fatty acid-CoA ligase activity	8.52E-03
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.67E-03
82	GO:0043022: ribosome binding	9.92E-03
83	GO:0016209: antioxidant activity	9.92E-03
84	GO:0035064: methylated histone binding	9.92E-03
85	GO:0004601: peroxidase activity	1.10E-02
86	GO:0016788: hydrolase activity, acting on ester bonds	1.14E-02
87	GO:0015035: protein disulfide oxidoreductase activity	1.20E-02
88	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.30E-02
89	GO:0045309: protein phosphorylated amino acid binding	1.46E-02
90	GO:0047617: acyl-CoA hydrolase activity	1.46E-02
91	GO:0015238: drug transmembrane transporter activity	1.69E-02
92	GO:0019904: protein domain specific binding	1.81E-02
93	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.81E-02
94	GO:0008559: xenobiotic-transporting ATPase activity	1.81E-02
95	GO:0000049: tRNA binding	1.99E-02
96	GO:0003746: translation elongation factor activity	2.05E-02
97	GO:0004175: endopeptidase activity	2.37E-02
98	GO:0003712: transcription cofactor activity	2.58E-02
99	GO:0004725: protein tyrosine phosphatase activity	2.78E-02
100	GO:0008080: N-acetyltransferase activity	4.89E-02
101	GO:0004527: exonuclease activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
2	GO:0005840: ribosome	3.10E-37
3	GO:0022625: cytosolic large ribosomal subunit	2.68E-28
4	GO:0022626: cytosolic ribosome	5.82E-22
5	GO:0005747: mitochondrial respiratory chain complex I	3.19E-15
6	GO:0005829: cytosol	1.41E-14
7	GO:0022627: cytosolic small ribosomal subunit	1.87E-13
8	GO:0000502: proteasome complex	4.49E-10
9	GO:0045271: respiratory chain complex I	5.90E-10
10	GO:0005839: proteasome core complex	8.75E-10
11	GO:0005737: cytoplasm	3.18E-09
12	GO:0005750: mitochondrial respiratory chain complex III	6.41E-09
13	GO:0005774: vacuolar membrane	9.81E-09
14	GO:0005773: vacuole	1.71E-08
15	GO:0005730: nucleolus	3.48E-08
16	GO:0005753: mitochondrial proton-transporting ATP synthase complex	4.74E-07
17	GO:0031966: mitochondrial membrane	2.20E-06
18	GO:0016020: membrane	7.11E-06
19	GO:0019773: proteasome core complex, alpha-subunit complex	4.79E-05
20	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.59E-04
21	GO:0008250: oligosaccharyltransferase complex	2.42E-04
22	GO:0005758: mitochondrial intermembrane space	3.73E-04
23	GO:0009507: chloroplast	4.90E-04
24	GO:0019774: proteasome core complex, beta-subunit complex	5.43E-04
25	GO:0005732: small nucleolar ribonucleoprotein complex	5.92E-04
26	GO:0005739: mitochondrion	7.22E-04
27	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	7.24E-04
28	GO:0045273: respiratory chain complex II	7.24E-04
29	GO:0005618: cell wall	8.67E-04
30	GO:0046930: pore complex	8.82E-04
31	GO:0035145: exon-exon junction complex	1.17E-03
32	GO:0005697: telomerase holoenzyme complex	1.17E-03
33	GO:0005783: endoplasmic reticulum	1.32E-03
34	GO:0046861: glyoxysomal membrane	1.92E-03
35	GO:0005853: eukaryotic translation elongation factor 1 complex	1.92E-03
36	GO:0005751: mitochondrial respiratory chain complex IV	1.92E-03
37	GO:0005788: endoplasmic reticulum lumen	2.04E-03
38	GO:0033180: proton-transporting V-type ATPase, V1 domain	2.78E-03
39	GO:1990726: Lsm1-7-Pat1 complex	2.78E-03
40	GO:0015934: large ribosomal subunit	3.21E-03
41	GO:0005777: peroxisome	3.30E-03
42	GO:0009506: plasmodesma	3.67E-03
43	GO:0016471: vacuolar proton-transporting V-type ATPase complex	3.75E-03
44	GO:0070469: respiratory chain	3.78E-03
45	GO:0005741: mitochondrial outer membrane	4.16E-03
46	GO:0005746: mitochondrial respiratory chain	4.81E-03
47	GO:0005759: mitochondrial matrix	4.92E-03
48	GO:0030904: retromer complex	5.96E-03
49	GO:0005771: multivesicular body	5.96E-03
50	GO:0009536: plastid	6.70E-03
51	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	8.52E-03
52	GO:0005688: U6 snRNP	9.92E-03
53	GO:0009514: glyoxysome	1.14E-02
54	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.14E-02
55	GO:0005763: mitochondrial small ribosomal subunit	1.30E-02
56	GO:0071011: precatalytic spliceosome	1.46E-02
57	GO:0005740: mitochondrial envelope	1.63E-02
58	GO:0008541: proteasome regulatory particle, lid subcomplex	1.81E-02
59	GO:0071013: catalytic step 2 spliceosome	1.81E-02
60	GO:0000325: plant-type vacuole	1.87E-02
61	GO:0005665: DNA-directed RNA polymerase II, core complex	1.99E-02
62	GO:0009508: plastid chromosome	2.18E-02
63	GO:0019013: viral nucleocapsid	2.18E-02
64	GO:0005938: cell cortex	2.18E-02
65	GO:0005886: plasma membrane	2.72E-02
66	GO:0000419: DNA-directed RNA polymerase V complex	2.78E-02
67	GO:0015935: small ribosomal subunit	3.44E-02
68	GO:0015629: actin cytoskeleton	3.90E-02