co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G46370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
2	GO:0019593: mannitol biosynthetic process	0.00E+00
3	GO:0009560: embryo sac egg cell differentiation	0.00E+00
4	GO:0046398: UDP-glucuronate metabolic process	0.00E+00
5	GO:0034263: positive regulation of autophagy in response to ER overload	0.00E+00
6	GO:0052573: UDP-D-galactose metabolic process	0.00E+00
7	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
8	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
9	GO:0042353: fucose biosynthetic process	0.00E+00
10	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
11	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
12	GO:0009611: response to wounding	1.37E-06
13	GO:0010200: response to chitin	5.32E-05
14	GO:0006955: immune response	1.37E-04
15	GO:0045489: pectin biosynthetic process	1.43E-04
16	GO:2000070: regulation of response to water deprivation	1.76E-04
17	GO:0034472: snRNA 3'-end processing	2.09E-04
18	GO:0009609: response to symbiotic bacterium	2.09E-04
19	GO:0051180: vitamin transport	2.09E-04
20	GO:0051446: positive regulation of meiotic cell cycle	2.09E-04
21	GO:0030974: thiamine pyrophosphate transport	2.09E-04
22	GO:0050691: regulation of defense response to virus by host	2.09E-04
23	GO:0006680: glucosylceramide catabolic process	2.09E-04
24	GO:0009873: ethylene-activated signaling pathway	2.28E-04
25	GO:0009737: response to abscisic acid	2.40E-04
26	GO:0009620: response to fungus	2.41E-04
27	GO:2000280: regulation of root development	3.16E-04
28	GO:0030244: cellulose biosynthetic process	4.53E-04
29	GO:0046740: transport of virus in host, cell to cell	4.66E-04
30	GO:0031407: oxylipin metabolic process	4.66E-04
31	GO:0042754: negative regulation of circadian rhythm	4.66E-04
32	GO:0010289: homogalacturonan biosynthetic process	4.66E-04
33	GO:0010372: positive regulation of gibberellin biosynthetic process	4.66E-04
34	GO:0043255: regulation of carbohydrate biosynthetic process	4.66E-04
35	GO:0015893: drug transport	4.66E-04
36	GO:0030259: lipid glycosylation	4.66E-04
37	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.92E-04
38	GO:0070588: calcium ion transmembrane transport	7.02E-04
39	GO:0006081: cellular aldehyde metabolic process	7.59E-04
40	GO:0010325: raffinose family oligosaccharide biosynthetic process	7.59E-04
41	GO:0006011: UDP-glucose metabolic process	7.59E-04
42	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	7.59E-04
43	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	7.59E-04
44	GO:0080168: abscisic acid transport	7.59E-04
45	GO:0009863: salicylic acid mediated signaling pathway	8.63E-04
46	GO:0009695: jasmonic acid biosynthetic process	9.49E-04
47	GO:0031408: oxylipin biosynthetic process	1.04E-03
48	GO:0006986: response to unfolded protein	1.08E-03
49	GO:0010071: root meristem specification	1.08E-03
50	GO:0030100: regulation of endocytosis	1.08E-03
51	GO:0009399: nitrogen fixation	1.08E-03
52	GO:0033014: tetrapyrrole biosynthetic process	1.08E-03
53	GO:0009226: nucleotide-sugar biosynthetic process	1.08E-03
54	GO:0015696: ammonium transport	1.08E-03
55	GO:0009686: gibberellin biosynthetic process	1.23E-03
56	GO:0046686: response to cadmium ion	1.31E-03
57	GO:0006970: response to osmotic stress	1.42E-03
58	GO:1902347: response to strigolactone	1.44E-03
59	GO:0072488: ammonium transmembrane transport	1.44E-03
60	GO:0006536: glutamate metabolic process	1.44E-03
61	GO:0033356: UDP-L-arabinose metabolic process	1.44E-03
62	GO:0001709: cell fate determination	1.44E-03
63	GO:0000271: polysaccharide biosynthetic process	1.56E-03
64	GO:0006665: sphingolipid metabolic process	1.83E-03
65	GO:0045487: gibberellin catabolic process	1.83E-03
66	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.85E-03
67	GO:0010256: endomembrane system organization	2.26E-03
68	GO:0006796: phosphate-containing compound metabolic process	2.26E-03
69	GO:0047484: regulation of response to osmotic stress	2.26E-03
70	GO:0010337: regulation of salicylic acid metabolic process	2.26E-03
71	GO:0010555: response to mannitol	2.71E-03
72	GO:1901001: negative regulation of response to salt stress	2.71E-03
73	GO:0006468: protein phosphorylation	2.76E-03
74	GO:0009845: seed germination	2.79E-03
75	GO:0006952: defense response	3.01E-03
76	GO:0009751: response to salicylic acid	3.12E-03
77	GO:0009816: defense response to bacterium, incompatible interaction	3.15E-03
78	GO:1902074: response to salt	3.20E-03
79	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.20E-03
80	GO:0006401: RNA catabolic process	3.20E-03
81	GO:0071669: plant-type cell wall organization or biogenesis	3.20E-03
82	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.20E-03
83	GO:0010492: maintenance of shoot apical meristem identity	3.71E-03
84	GO:0007155: cell adhesion	3.71E-03
85	GO:0006402: mRNA catabolic process	3.71E-03
86	GO:1900150: regulation of defense response to fungus	3.71E-03
87	GO:0010078: maintenance of root meristem identity	3.71E-03
88	GO:0007623: circadian rhythm	3.80E-03
89	GO:0030968: endoplasmic reticulum unfolded protein response	4.24E-03
90	GO:0009699: phenylpropanoid biosynthetic process	4.24E-03
91	GO:0009827: plant-type cell wall modification	4.24E-03
92	GO:0009834: plant-type secondary cell wall biogenesis	4.28E-03
93	GO:0010345: suberin biosynthetic process	4.80E-03
94	GO:0098656: anion transmembrane transport	4.80E-03
95	GO:0006783: heme biosynthetic process	4.80E-03
96	GO:0016051: carbohydrate biosynthetic process	4.91E-03
97	GO:0006779: porphyrin-containing compound biosynthetic process	5.38E-03
98	GO:0048829: root cap development	5.99E-03
99	GO:0006782: protoporphyrinogen IX biosynthetic process	5.99E-03
100	GO:0055062: phosphate ion homeostasis	5.99E-03
101	GO:0019538: protein metabolic process	5.99E-03
102	GO:0051707: response to other organism	6.33E-03
103	GO:0071555: cell wall organization	6.48E-03
104	GO:0010015: root morphogenesis	6.62E-03
105	GO:0006820: anion transport	7.28E-03
106	GO:0031347: regulation of defense response	7.66E-03
107	GO:0055046: microgametogenesis	7.96E-03
108	GO:0005986: sucrose biosynthetic process	7.96E-03
109	GO:0009809: lignin biosynthetic process	8.54E-03
110	GO:0048467: gynoecium development	8.66E-03
111	GO:0034605: cellular response to heat	8.66E-03
112	GO:0002237: response to molecule of bacterial origin	8.66E-03
113	GO:0009969: xyloglucan biosynthetic process	9.37E-03
114	GO:0080188: RNA-directed DNA methylation	9.37E-03
115	GO:0046777: protein autophosphorylation	9.47E-03
116	GO:0009833: plant-type primary cell wall biogenesis	1.01E-02
117	GO:0016310: phosphorylation	1.06E-02
118	GO:0009409: response to cold	1.10E-02
119	GO:0051302: regulation of cell division	1.17E-02
120	GO:0009624: response to nematode	1.22E-02
121	GO:0016998: cell wall macromolecule catabolic process	1.25E-02
122	GO:0009269: response to desiccation	1.25E-02
123	GO:0030433: ubiquitin-dependent ERAD pathway	1.33E-02
124	GO:0005975: carbohydrate metabolic process	1.34E-02
125	GO:0000398: mRNA splicing, via spliceosome	1.41E-02
126	GO:0009306: protein secretion	1.50E-02
127	GO:0048443: stamen development	1.50E-02
128	GO:0008284: positive regulation of cell proliferation	1.59E-02
129	GO:0080022: primary root development	1.68E-02
130	GO:0006814: sodium ion transport	1.86E-02
131	GO:0048544: recognition of pollen	1.86E-02
132	GO:0006633: fatty acid biosynthetic process	1.92E-02
133	GO:0009749: response to glucose	1.96E-02
134	GO:0010193: response to ozone	2.06E-02
135	GO:0000302: response to reactive oxygen species	2.06E-02
136	GO:0010150: leaf senescence	2.11E-02
137	GO:0031047: gene silencing by RNA	2.15E-02
138	GO:0010090: trichome morphogenesis	2.25E-02
139	GO:0006914: autophagy	2.36E-02
140	GO:0009639: response to red or far red light	2.36E-02
141	GO:0006470: protein dephosphorylation	2.42E-02
142	GO:0007267: cell-cell signaling	2.46E-02
143	GO:0001666: response to hypoxia	2.67E-02
144	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.78E-02
145	GO:0010029: regulation of seed germination	2.78E-02
146	GO:0009738: abscisic acid-activated signaling pathway	2.82E-02
147	GO:0009555: pollen development	2.94E-02
148	GO:0048573: photoperiodism, flowering	3.00E-02
149	GO:0015995: chlorophyll biosynthetic process	3.00E-02
150	GO:0008219: cell death	3.23E-02
151	GO:0048481: plant ovule development	3.23E-02
152	GO:0010311: lateral root formation	3.34E-02
153	GO:0009832: plant-type cell wall biogenesis	3.34E-02
154	GO:0006499: N-terminal protein myristoylation	3.46E-02
155	GO:0006811: ion transport	3.46E-02
156	GO:0007049: cell cycle	3.65E-02
157	GO:0009723: response to ethylene	3.78E-02
158	GO:0009637: response to blue light	3.82E-02
159	GO:0045087: innate immune response	3.82E-02
160	GO:0006457: protein folding	4.04E-02
161	GO:0050832: defense response to fungus	4.13E-02
162	GO:0006839: mitochondrial transport	4.19E-02
163	GO:0006351: transcription, DNA-templated	4.22E-02
164	GO:0006897: endocytosis	4.32E-02
165	GO:0045892: negative regulation of transcription, DNA-templated	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0047350: glucuronate-1-phosphate uridylyltransferase activity	0.00E+00
2	GO:0030621: U4 snRNA binding	0.00E+00
3	GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity	0.00E+00
4	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
5	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
6	GO:0010491: UTP:arabinose-1-phosphate uridylyltransferase activity	0.00E+00
7	GO:0051748: UTP-monosaccharide-1-phosphate uridylyltransferase activity	0.00E+00
8	GO:0033721: aldehyde dehydrogenase (NADP+) activity	0.00E+00
9	GO:0017103: UTP:galactose-1-phosphate uridylyltransferase activity	0.00E+00
10	GO:0047338: UTP:xylose-1-phosphate uridylyltransferase activity	0.00E+00
11	GO:0016629: 12-oxophytodienoate reductase activity	2.06E-06
12	GO:0009922: fatty acid elongase activity	5.09E-05
13	GO:0090422: thiamine pyrophosphate transporter activity	2.09E-04
14	GO:0015085: calcium ion transmembrane transporter activity	2.09E-04
15	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	2.09E-04
16	GO:0090440: abscisic acid transporter activity	2.09E-04
17	GO:0004348: glucosylceramidase activity	2.09E-04
18	GO:0004674: protein serine/threonine kinase activity	2.68E-04
19	GO:0004103: choline kinase activity	4.66E-04
20	GO:0008883: glutamyl-tRNA reductase activity	4.66E-04
21	GO:0001047: core promoter binding	4.66E-04
22	GO:0017040: ceramidase activity	4.66E-04
23	GO:0004383: guanylate cyclase activity	7.59E-04
24	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	7.59E-04
25	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	7.59E-04
26	GO:0047274: galactinol-sucrose galactosyltransferase activity	7.59E-04
27	GO:0046423: allene-oxide cyclase activity	7.59E-04
28	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.82E-04
29	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.82E-04
30	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.82E-04
31	GO:0005516: calmodulin binding	1.01E-03
32	GO:0004540: ribonuclease activity	1.04E-03
33	GO:0004351: glutamate decarboxylase activity	1.08E-03
34	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.08E-03
35	GO:0001653: peptide receptor activity	1.08E-03
36	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.08E-03
37	GO:0005432: calcium:sodium antiporter activity	1.08E-03
38	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.13E-03
39	GO:0016760: cellulose synthase (UDP-forming) activity	1.23E-03
40	GO:0043015: gamma-tubulin binding	1.44E-03
41	GO:0010181: FMN binding	1.81E-03
42	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.83E-03
43	GO:0004356: glutamate-ammonia ligase activity	1.83E-03
44	GO:0017070: U6 snRNA binding	1.83E-03
45	GO:0008381: mechanically-gated ion channel activity	1.83E-03
46	GO:0016301: kinase activity	1.95E-03
47	GO:0008519: ammonium transmembrane transporter activity	2.26E-03
48	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.26E-03
49	GO:0016758: transferase activity, transferring hexosyl groups	2.44E-03
50	GO:0016759: cellulose synthase activity	2.50E-03
51	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.71E-03
52	GO:0051753: mannan synthase activity	2.71E-03
53	GO:0004143: diacylglycerol kinase activity	3.20E-03
54	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.20E-03
55	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.20E-03
56	GO:0004427: inorganic diphosphatase activity	3.20E-03
57	GO:0016621: cinnamoyl-CoA reductase activity	3.20E-03
58	GO:0015297: antiporter activity	3.58E-03
59	GO:0015491: cation:cation antiporter activity	3.71E-03
60	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.71E-03
61	GO:0004672: protein kinase activity	3.89E-03
62	GO:0003951: NAD+ kinase activity	4.24E-03
63	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.38E-03
64	GO:0016757: transferase activity, transferring glycosyl groups	7.19E-03
65	GO:0004521: endoribonuclease activity	7.28E-03
66	GO:0005315: inorganic phosphate transmembrane transporter activity	7.96E-03
67	GO:0005262: calcium channel activity	7.96E-03
68	GO:0005388: calcium-transporting ATPase activity	7.96E-03
69	GO:0000175: 3'-5'-exoribonuclease activity	7.96E-03
70	GO:0031625: ubiquitin protein ligase binding	9.46E-03
71	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.16E-02
72	GO:0051087: chaperone binding	1.17E-02
73	GO:0035251: UDP-glucosyltransferase activity	1.25E-02
74	GO:0008514: organic anion transmembrane transporter activity	1.50E-02
75	GO:0008536: Ran GTPase binding	1.77E-02
76	GO:0050662: coenzyme binding	1.86E-02
77	GO:0004518: nuclease activity	2.15E-02
78	GO:0016413: O-acetyltransferase activity	2.57E-02
79	GO:0005524: ATP binding	2.70E-02
80	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.89E-02
81	GO:0004683: calmodulin-dependent protein kinase activity	3.00E-02
82	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.11E-02
83	GO:0015238: drug transmembrane transporter activity	3.34E-02
84	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.58E-02
85	GO:0003729: mRNA binding	3.94E-02
86	GO:0050661: NADP binding	4.19E-02
87	GO:0030246: carbohydrate binding	4.23E-02
88	GO:0052689: carboxylic ester hydrolase activity	4.46E-02
89	GO:0043621: protein self-association	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0032039: integrator complex	0.00E+00
2	GO:0005768: endosome	1.35E-05
3	GO:0005886: plasma membrane	5.09E-05
4	GO:0005802: trans-Golgi network	5.65E-05
5	GO:0016442: RISC complex	2.09E-04
6	GO:0009506: plasmodesma	8.94E-04
7	GO:0046658: anchored component of plasma membrane	1.01E-03
8	GO:0005794: Golgi apparatus	1.04E-03
9	GO:0000178: exosome (RNase complex)	1.83E-03
10	GO:0005778: peroxisomal membrane	2.66E-03
11	GO:0030173: integral component of Golgi membrane	2.71E-03
12	GO:0000932: P-body	2.98E-03
13	GO:0046540: U4/U6 x U5 tri-snRNP complex	4.24E-03
14	GO:0016021: integral component of membrane	4.33E-03
15	GO:0010494: cytoplasmic stress granule	4.80E-03
16	GO:0015030: Cajal body	5.38E-03
17	GO:0016604: nuclear body	5.38E-03
18	GO:0048471: perinuclear region of cytoplasm	6.62E-03
19	GO:0009536: plastid	9.24E-03
20	GO:0005681: spliceosomal complex	1.01E-02
21	GO:0000139: Golgi membrane	1.10E-02
22	GO:0005743: mitochondrial inner membrane	1.30E-02
23	GO:0030136: clathrin-coated vesicle	1.59E-02
24	GO:0005770: late endosome	1.77E-02
25	GO:0032580: Golgi cisterna membrane	2.36E-02
26	GO:0005667: transcription factor complex	2.89E-02
27	GO:0019005: SCF ubiquitin ligase complex	3.23E-02
28	GO:0005643: nuclear pore	3.23E-02
29	GO:0031902: late endosome membrane	4.32E-02
30	GO:0090406: pollen tube	4.57E-02