Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G46260

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
2GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
3GO:0051180: vitamin transport4.45E-05
4GO:0030974: thiamine pyrophosphate transport4.45E-05
5GO:0006680: glucosylceramide catabolic process4.45E-05
6GO:0010289: homogalacturonan biosynthetic process1.10E-04
7GO:0015893: drug transport1.10E-04
8GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid1.89E-04
9GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.89E-04
10GO:0033014: tetrapyrrole biosynthetic process2.78E-04
11GO:0009611: response to wounding3.23E-04
12GO:0042991: transcription factor import into nucleus3.73E-04
13GO:1902347: response to strigolactone3.73E-04
14GO:0045727: positive regulation of translation3.73E-04
15GO:0070897: DNA-templated transcriptional preinitiation complex assembly4.75E-04
16GO:0047484: regulation of response to osmotic stress5.82E-04
17GO:0006751: glutathione catabolic process5.82E-04
18GO:1901001: negative regulation of response to salt stress6.94E-04
19GO:0006401: RNA catabolic process8.11E-04
20GO:0006955: immune response8.11E-04
21GO:2000070: regulation of response to water deprivation9.32E-04
22GO:0007155: cell adhesion9.32E-04
23GO:0048193: Golgi vesicle transport1.06E-03
24GO:0006364: rRNA processing1.10E-03
25GO:0090305: nucleic acid phosphodiester bond hydrolysis1.19E-03
26GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay1.19E-03
27GO:0006783: heme biosynthetic process1.19E-03
28GO:0010345: suberin biosynthetic process1.19E-03
29GO:2000280: regulation of root development1.32E-03
30GO:0007346: regulation of mitotic cell cycle1.32E-03
31GO:0006779: porphyrin-containing compound biosynthetic process1.32E-03
32GO:0010018: far-red light signaling pathway1.32E-03
33GO:0055062: phosphate ion homeostasis1.47E-03
34GO:0006782: protoporphyrinogen IX biosynthetic process1.47E-03
35GO:0019538: protein metabolic process1.47E-03
36GO:0006468: protein phosphorylation1.54E-03
37GO:0030148: sphingolipid biosynthetic process1.61E-03
38GO:0000398: mRNA splicing, via spliceosome1.77E-03
39GO:0048467: gynoecium development2.09E-03
40GO:0010143: cutin biosynthetic process2.09E-03
41GO:0035556: intracellular signal transduction2.22E-03
42GO:0009790: embryo development2.23E-03
43GO:0010025: wax biosynthetic process2.42E-03
44GO:0042753: positive regulation of circadian rhythm2.42E-03
45GO:0006636: unsaturated fatty acid biosynthetic process2.42E-03
46GO:0009695: jasmonic acid biosynthetic process2.77E-03
47GO:0008299: isoprenoid biosynthetic process2.77E-03
48GO:0031408: oxylipin biosynthetic process2.96E-03
49GO:0051321: meiotic cell cycle2.96E-03
50GO:0006470: protein dephosphorylation3.00E-03
51GO:0010468: regulation of gene expression3.13E-03
52GO:0030433: ubiquitin-dependent ERAD pathway3.14E-03
53GO:0080092: regulation of pollen tube growth3.14E-03
54GO:0010584: pollen exine formation3.53E-03
55GO:0048443: stamen development3.53E-03
56GO:0000271: polysaccharide biosynthetic process3.93E-03
57GO:0010501: RNA secondary structure unwinding3.93E-03
58GO:0042335: cuticle development3.93E-03
59GO:0009960: endosperm development4.14E-03
60GO:0045489: pectin biosynthetic process4.14E-03
61GO:0010183: pollen tube guidance4.56E-03
62GO:0010193: response to ozone4.77E-03
63GO:0006979: response to oxidative stress5.10E-03
64GO:0010200: response to chitin5.18E-03
65GO:0009639: response to red or far red light5.45E-03
66GO:0009651: response to salt stress5.71E-03
67GO:0051607: defense response to virus5.91E-03
68GO:0009816: defense response to bacterium, incompatible interaction6.39E-03
69GO:0015995: chlorophyll biosynthetic process6.89E-03
70GO:0009751: response to salicylic acid7.27E-03
71GO:0048481: plant ovule development7.39E-03
72GO:0009753: response to jasmonic acid7.91E-03
73GO:0045087: innate immune response8.71E-03
74GO:0016051: carbohydrate biosynthetic process8.71E-03
75GO:0009873: ethylene-activated signaling pathway9.53E-03
76GO:0006839: mitochondrial transport9.55E-03
77GO:0051707: response to other organism1.04E-02
78GO:0009640: photomorphogenesis1.04E-02
79GO:0000165: MAPK cascade1.19E-02
80GO:0006355: regulation of transcription, DNA-templated1.22E-02
81GO:0007165: signal transduction1.28E-02
82GO:0009736: cytokinin-activated signaling pathway1.28E-02
83GO:0009585: red, far-red light phototransduction1.28E-02
84GO:0048367: shoot system development1.48E-02
85GO:0009620: response to fungus1.55E-02
86GO:0018105: peptidyl-serine phosphorylation1.68E-02
87GO:0009742: brassinosteroid mediated signaling pathway1.72E-02
88GO:0006633: fatty acid biosynthetic process2.27E-02
89GO:0007623: circadian rhythm2.43E-02
90GO:0009617: response to bacterium2.76E-02
91GO:0006970: response to osmotic stress3.50E-02
92GO:0009409: response to cold3.60E-02
93GO:0048366: leaf development3.73E-02
94GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.96E-02
95GO:0016192: vesicle-mediated transport4.01E-02
96GO:0046777: protein autophosphorylation4.06E-02
97GO:0032259: methylation4.95E-02
RankGO TermAdjusted P value
1GO:0008419: RNA lariat debranching enzyme activity0.00E+00
2GO:0004698: calcium-dependent protein kinase C activity0.00E+00
3GO:0004348: glucosylceramidase activity4.45E-05
4GO:0090422: thiamine pyrophosphate transporter activity4.45E-05
5GO:0019888: protein phosphatase regulator activity6.27E-05
6GO:0016629: 12-oxophytodienoate reductase activity1.10E-04
7GO:0017022: myosin binding1.10E-04
8GO:0004103: choline kinase activity1.10E-04
9GO:0008883: glutamyl-tRNA reductase activity1.10E-04
10GO:0001047: core promoter binding1.10E-04
11GO:0042389: omega-3 fatty acid desaturase activity1.10E-04
12GO:0003840: gamma-glutamyltransferase activity1.89E-04
13GO:0004758: serine C-palmitoyltransferase activity1.89E-04
14GO:0036374: glutathione hydrolase activity1.89E-04
15GO:0004383: guanylate cyclase activity1.89E-04
16GO:0001653: peptide receptor activity2.78E-04
17GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity2.78E-04
18GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway3.73E-04
19GO:0016301: kinase activity6.65E-04
20GO:0004722: protein serine/threonine phosphatase activity8.79E-04
21GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.06E-03
22GO:0000175: 3'-5'-exoribonuclease activity1.92E-03
23GO:0017025: TBP-class protein binding2.25E-03
24GO:0004540: ribonuclease activity2.96E-03
25GO:0004707: MAP kinase activity2.96E-03
26GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.14E-03
27GO:0010181: FMN binding4.35E-03
28GO:0005524: ATP binding4.77E-03
29GO:0004518: nuclease activity4.99E-03
30GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity5.68E-03
31GO:0004004: ATP-dependent RNA helicase activity6.89E-03
32GO:0004683: calmodulin-dependent protein kinase activity6.89E-03
33GO:0008757: S-adenosylmethionine-dependent methyltransferase activity7.14E-03
34GO:0005096: GTPase activator activity7.65E-03
35GO:0004693: cyclin-dependent protein serine/threonine kinase activity7.91E-03
36GO:0050661: NADP binding9.55E-03
37GO:0004674: protein serine/threonine kinase activity1.02E-02
38GO:0005515: protein binding1.04E-02
39GO:0046872: metal ion binding1.18E-02
40GO:0016758: transferase activity, transferring hexosyl groups1.90E-02
41GO:0030170: pyridoxal phosphate binding2.08E-02
42GO:0008168: methyltransferase activity3.23E-02
43GO:0004842: ubiquitin-protein transferase activity3.68E-02
44GO:0003677: DNA binding3.73E-02
45GO:0004672: protein kinase activity3.90E-02
RankGO TermAdjusted P value
1GO:0000159: protein phosphatase type 2A complex4.59E-05
2GO:0042170: plastid membrane1.10E-04
3GO:0030133: transport vesicle1.10E-04
4GO:0000178: exosome (RNase complex)4.75E-04
5GO:0030176: integral component of endoplasmic reticulum membrane2.25E-03
6GO:0000932: P-body6.15E-03
7GO:0005681: spliceosomal complex1.45E-02
8GO:0016607: nuclear speck1.48E-02
9GO:0009706: chloroplast inner membrane1.65E-02
10GO:0005634: nucleus2.64E-02
11GO:0005737: cytoplasm2.88E-02
12GO:0000139: Golgi membrane3.60E-02
13GO:0009506: plasmodesma4.41E-02
14GO:0005743: mitochondrial inner membrane4.85E-02
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Gene type



Gene DE type